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GTF2H2 (Homo sapiens) in pDNR-Dual (Creator donor/master vector)

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Explanation of Terms


Gene: Gene Symbol:  GTF2H2C
Gene Name:  general transcription factor IIH, polypeptide 2C
Sequence              Map: pDNR-Dual_with_human_insert.pdf
Original Clone ID: FLH026779.01L
Keyword: potential short variant
Species: Homo sapiens
Type: cDNA
Vector Name: pDNR-Dual               Format:  FUSION
Source: HIP
Description: Short variant or partial clone comparing to NM_001515
Comments: None
Mutation/
Discrepancy :
No / No
Publications: None
Authors: HIP
HsCD00022529

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 498nts         Open reading frame : 1 to 498
Reference Sequence Alignment

ATGGATGAAGAACCTGAAAGAACTAAGCGATGGGAAGGAGGCTATGAAAGAACATGGGAG
ATTCTTAAAGAAGATGAATCTGGATCACTTAAAGCTACAATAGAAGACATTCTATTCAAG
GCAAAGAGAAAAAGAGTATTTGAGCACCATGGACAAGTTCGACTTGGAATGATGCGCCAC
CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGAAAGCTGTGGATATGACCTGCCAT
GGAGAGCCATCTCTTTATAATTCCCTAAGCATAGCTATGCAGACTCTAAAGTTAGTATTA
TACATTATGTATAATTTG


Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: Sequence Verification
Reference Sequence Annotations:
End on reference sequence 566
Start on reference sequence 69
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
5P GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACACC(ATG-GOI)

3' Linker Sequence:
5p (goi-stop)GGAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  ampicillin
Bacterial Selection Condition:  100 ug/mL ampicillin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pDNR-Dual

pDNR-Dual in advanced viewed

Synonyms: None
Sequencing Primer: Forward:  M13F
Reverse:  Unknown
Description: Recombinational donor/master vector with 6xHN tag ORF, T7 and M13 primer sites; ampicillin resistance; restriction enzyme cloning (into) and recombinational cloning (from).
Comments: The position of features were detemined for the empty form of the vector, which is described in detail on the BD/Clontech website. Subcloning into the MCS was performed using the infusion reaction strategy and some restriction sites in the MCS may be lost after an insert is added.
Size (bp): 4938
Parent Vector: None
Empty Vector: None
Properties: Creator, donor (entry), loxP, multiple cloning site, recombinational cloning, with tag/fusion/marker
Author Name: BD Biosciences Clontech
Publications: None
Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
MCS MCS restriction enzyme-type multiple cloning site 45 129
bacterial origin ColE1 ColE1 (pUC-type) origin of replication 4111 4574
negative selection marker SacB SacB negative selection marker gene (sucrose sensitivity) 1057 2972
primer site M13 primer M13 primer sequencing site 4839 4855
primer site T7 primer T7 RNA Pol primer sequencing site 4865 4883
recombination site loxP site loxP recombination site 1015 1048
recombination site loxP site loxP recombination site 9 42
selectable marker CmR chloramphenicol resistance gene ORF (functional only after recombination of insert into vector with promoter) 986 327
selectable marker AmpR ampicillin resistance gene 3103 3963
splice donor site SD site splice donor site 132 136
tag HN 6xHN epitope tag 141 176

 

  • Gene
  • Pathways
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : GTF2H2C
Symbol Nomenclature : GTF2H2C
Designation : general transcription factor IIH polypeptide 2-like protein|general transcription factor IIH subunit 2-like protein
Full Nomenclature : general transcription factor IIH, polypeptide 2C
GENEID : 728340
HGNC : 31394
Vega : OTTHUMG00000162365
Target GenBank: BC005345

 

Reference Sequence Alignment

  

HsCD00022529        ATGGATGAAGAACCTGAAAGAACTAAGCGATGGGAAGGAGGCTATGAAAGAACATGGGAG
NM_001098728.1      ATGGATGAAGAACCTGAAAGAACTAAGCGATGGGAAGGAGGCTATGAAAGAACATGGGAG
XM_005248592.1      ------------------------------------------------------------
XM_005248484.1      ATGGATGAAGAACCTGAAAGAACTAAGCGATGGGAAGGAGGCTATGAAAGAACATGGGAG
XM_005276789.1      ------------------------------------------------------------
XM_005248594.1      ------------------------------------------------------------
XM_005276798.1      ------------------------------------------------------------
XM_005276788.1      ------------------------------------------------------------
XM_005248590.1      ATGGATGAAGAACCTGAAAGAACTAAGCGATGGGAAGGAGGCTATGAAAGAACATGGGAG
NM_001515.3         ATGGATGAAGAACCTGAAAGAACTAAGCGATGGGAAGGAGGCTATGAAAGAACATGGGAG
NM_001042490.3      ATGGATGAAGAACCTGAAAGAACTAAGCGATGGGAAGGAGGCTATGAAAGAACATGGGAG
XM_005276784.1      ATGGATGAAGAACCTGAAAGAACTAAGCGATGGGAAGGAGGCTATGAAAGAACATGGGAG
XM_005248593.1      ------------------------------------------------------------
                                                                                

HsCD00022529        ATTCTTAAAGAAGATGAATCTGGATCACTTAAAGCTACAATAGAAGACATTCTATTCAAG
NM_001098728.1      ATTCTTAAAGAAGATGAATCTGGATCACTTAAAGCTACAATAGAAGACATTCTATTCAAG
XM_005248592.1      ------------------------------------------------------------
XM_005248484.1      ATTCTTAAAGAAGATGAATCTGGATCACTTAAAGCTACAATAGAAGACATTCTATTCAAG
XM_005276789.1      ------------------------------------------------------------
XM_005248594.1      ------------------------------------------------------------
XM_005276798.1      ------------------------------------------------------------
XM_005276788.1      ------------------------------------------------------------
XM_005248590.1      ATTCTTAAAGAAGATGAATCTGGATCACTTAAAGCTACAATAGAAGACATTCTATTCAAG
NM_001515.3         ATTCTTAAAGAAGATGAATCTGGATCACTTAAAGCTACAATAGAAGACATTCTATTCAAG
NM_001042490.3      ATTCTTAAAGAAGATGAATCTGGATCACTTAAAGCTACAATAGAAGACATTCTATTCAAG
XM_005276784.1      ATTCTTAAAGAAGATGAATCTGGATCACTTAAAGCTACAATAGAAGACATTCTATTCAAG
XM_005248593.1      ------------------------------------------------------------
                                                                                

HsCD00022529        GCAAAGAGAAAAAGAGTATTTGAGCACCATGGACAAGTTCGACTTGGAATGATGCGCCAC
NM_001098728.1      GCAAAGAGAAAAAGAGTATTTGAGCACCATGGACAAGTTCGACTTGGAATGATGCGCCAC
XM_005248592.1      ------------------------------------------------ATGATGCGCCAC
XM_005248484.1      GCAAAGAGAAAAAGAGTATTTGAGCACCATGGACAAGTTCGACTTGGAATGATGCGCCAC
XM_005276789.1      ---------------------------------------------------ATGCGCCAC
XM_005248594.1      ------------------------------------------------------------
XM_005276798.1      ------------------------------------------------------------
XM_005276788.1      ------------------------------------------------ATGATGCGCCAC
XM_005248590.1      GCAAAGAGAAAAAGAGTATTTGAGCACCATGGACAAGTTCGACTTGGAATGATGCGCCAC
NM_001515.3         GCAAAGAGAAAAAGAGTATTTGAGCACCATGGACAAGTTCGACTTGGAATGATGCGCCAC
NM_001042490.3      GCAAAGAGAAAAAGAGTATTTGAGCACCATGGACAAGTTCGACTTGGAATGATGCGCCAC
XM_005276784.1      GCAAAGAGAAAAAGAGTATTTGAGCACCATGGACAAGTTCGACTTGGAATGATGCGCCAC
XM_005248593.1      ---------------------------------------------------ATGCGCCAC
                                                                                

HsCD00022529        CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
NM_001098728.1      CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
XM_005248592.1      CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
XM_005248484.1      CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
XM_005276789.1      CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
XM_005248594.1      ------------------------------------------------------------
XM_005276798.1      ------------------------------------------------------------
XM_005276788.1      CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
XM_005248590.1      CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
NM_001515.3         CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
NM_001042490.3      CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
XM_005276784.1      CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
XM_005248593.1      CTTTATGTGGTAGTAGATGGATCAAGAACAATGGAAGACCAAGATTTAAAGCCTAATAGA
                                                                                

HsCD00022529        CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
NM_001098728.1      CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
XM_005248592.1      CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
XM_005248484.1      CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
XM_005276789.1      CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
XM_005248594.1      ------------------------------------------------------------
XM_005276798.1      ------------------------------------------------------------
XM_005276788.1      CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
XM_005248590.1      CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
NM_001515.3         CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
NM_001042490.3      CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
XM_005276784.1      CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
XM_005248593.1      CTGACGTGTACTTTAAAGTTGTTGGAATACTTTGTAGAGGAATATTTTGATCAAAATCCT
                                                                                

HsCD00022529        ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
NM_001098728.1      ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
XM_005248592.1      ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
XM_005248484.1      ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
XM_005276789.1      ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
XM_005248594.1      ------------------------------------------------------------
XM_005276798.1      ------------------------------------------------------------
XM_005276788.1      ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
XM_005248590.1      ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
NM_001515.3         ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
NM_001042490.3      ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
XM_005276784.1      ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
XM_005248593.1      ATTAGTCAGATTGGAATAATTGTAACTAAGAGTAAAAGAGCTGAAAAATTGACTGAACTT
                                                                                

HsCD00022529        TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGAAAGCTGTGGATATGACCTGCCAT
NM_001098728.1      TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGGAAGCTGTGGATATGACCTGCCAT
XM_005248592.1      TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGGAAGCTGTGGATATGACCTGCCAT
XM_005248484.1      TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGAAAGCTGTGGATATGACCTGCCAT
XM_005276789.1      TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGAAAGCTGTGGATATGACCTGCCAT
XM_005248594.1      ------------------------------------------------ATGACCTGCCAT
XM_005276798.1      ------------------------------------------------ATGACCTGCCAT
XM_005276788.1      TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGAAAGCTGTGGATATGACCTGCCAT
XM_005248590.1      TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGGAAGCTGTGGATATGACCTGCCAT
NM_001515.3         TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGAAAGCTGTGGATATGACCTGCCAT
NM_001042490.3      TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGGAAGCTGTGGATATGACCTGCCAT
XM_005276784.1      TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGAAAGCTGTGGATATGACCTGCCAT
XM_005248593.1      TCAGGAAACCCAAGAAAACATATAACGTCTTTGAAGGAAGCTGTGGATATGACCTGCCAT
                                                                    ************

HsCD00022529        GGAGAGCCATCTCTTTATAATTCCCTAAGCATAGCTATGCAGACTCTAAAGTTAGTATTA
NM_001098728.1      GGAGAGCCATCTCTTTATAATTCCCTAAGCATGGCTATGCAGACTCTAAAACACATGCCT
XM_005248592.1      GGAGAGCCATCTCTTTATAATTCCCTAAGCATGGCTATGCAGACTCTAAAACACATGCCT
XM_005248484.1      GGAGAGCCATCTCTTTATAATTCCCTAAGCATAGCTATGCAGACTCTAAAACACATGCCT
XM_005276789.1      GGAGAGCCATCTCTTTATAATTCCCTAAGCATAGCTATGCAGACTCTAAAACACATGCCT
XM_005248594.1      GGAGAGCCATCTCTTTATAATTCCCTAAGCATGGCTATGCAGACTCTAAAACACATGCCT
XM_005276798.1      GGAGAGCCATCTCTTTATAATTCCCTAAGCATGGCTATGCAGACTCTAAAACACATGCCT
XM_005276788.1      GGAGAGCCATCTCTTTATAATTCCCTAAGCATAGCTATGCAGACTCTAAAACACATGCCT
XM_005248590.1      GGAGAGCCATCTCTTTATAATTCCCTAAGCATGGCTATGCAGACTCTAAAACACATGCCT
NM_001515.3         GGAGAGCCATCTCTTTATAATTCCCTAAGCATAGCTATGCAGACTCTAAAACACATGCCT
NM_001042490.3      GGAGAGCCATCTCTTTATAATTCCCTAAGCATGGCTATGCAGACTCTAAAACACATGCCT
XM_005276784.1      GGAGAGCCATCTCTTTATAATTCCCTAAGCATAGCTATGCAGACTCTAAAACACATGCCT
XM_005248593.1      GGAGAGCCATCTCTTTATAATTCCCTAAGCATGGCTATGCAGACTCTAAAACACATGCCT
                    ********************************.*****************. :..*.  :

HsCD00022529        TACATTATGTATAATTTG------------------------------------------
NM_001098728.1      GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
XM_005248592.1      GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
XM_005248484.1      GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
XM_005276789.1      GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
XM_005248594.1      GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
XM_005276798.1      GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
XM_005276788.1      GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
XM_005248590.1      GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
NM_001515.3         GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
NM_001042490.3      GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
XM_005276784.1      GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
XM_005248593.1      GGACATACAAGTCGAGAAGTACTAATCATCTTTAGCAGCCTTACAACTTGCGATCCATCT
                     ...:** .:.*..: :.                                          

HsCD00022529        ------------------------------------------------------------
NM_001098728.1      AATATTTATGATCTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
XM_005248592.1      AATATTTATGATCTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
XM_005248484.1      AATATTTATGATCTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
XM_005276789.1      AATATTTATGATCTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
XM_005248594.1      AATATTTATGATCTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
XM_005276798.1      AATATTTATGATTTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
XM_005276788.1      AATATTTATGATCTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
XM_005248590.1      AATATTTATGATCTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
NM_001515.3         AATATTTATGATCTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
NM_001042490.3      AATATTTATGATTTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
XM_005276784.1      AATATTTATGATCTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
XM_005248593.1      AATATTTATGATCTAATCAAGACCCTAAAGGCAGCTAAAATTAGAGTATCTGTTATTGGA
                                                                                

HsCD00022529        ------------------------------------------------------------
NM_001098728.1      TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
XM_005248592.1      TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
XM_005248484.1      TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
XM_005276789.1      TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
XM_005248594.1      TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
XM_005276798.1      TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
XM_005276788.1      TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
XM_005248590.1      TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
NM_001515.3         TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
NM_001042490.3      TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
XM_005276784.1      TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
XM_005248593.1      TTGTCTGCAGAAGTTCGCGTTTGCACTGTACTTGCTCGTGAAACTGGTGGCACGTACCAT
                                                                                

HsCD00022529        ------------------------------------------------------------
NM_001098728.1      GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATCTTAGTCCTCCTCCT
XM_005248592.1      GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATCTTAGTCCTCCTCCT
XM_005248484.1      GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATGTTAGTCCTCCTCCT
XM_005276789.1      GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATGTTAGTCCTCCTCCT
XM_005248594.1      GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATCTTAGTCCTCCTCCT
XM_005276798.1      GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATCTTAGTCCTCCTCCT
XM_005276788.1      GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATGTTAGTCCTCCTCCT
XM_005248590.1      GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATCTTAGTCCTCCTCCT
NM_001515.3         GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATGTTAGTCCTCCTCCT
NM_001042490.3      GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATCTTAGTCCTCCTCCT
XM_005276784.1      GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATGTTAGTCCTCCTCCT
XM_005248593.1      GTTATTTTAGATGAAAGCCATTACAAAGAGTTGCTCACACATCATCTTAGTCCTCCTCCT
                                                                                

HsCD00022529        ------------------------------------------------------------
NM_001098728.1      GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
XM_005248592.1      GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
XM_005248484.1      GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
XM_005276789.1      GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
XM_005248594.1      GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
XM_005276798.1      GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
XM_005276788.1      GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
XM_005248590.1      GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
NM_001515.3         GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
NM_001042490.3      GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
XM_005276784.1      GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
XM_005248593.1      GCTAGCTCAAGTTCTGAATGCTCACTTATTCGTATGGGATTTCCTCAGCACACCATTGCT
                                                                                

HsCD00022529        ------------------------------------------------------------
NM_001098728.1      TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
XM_005248592.1      TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
XM_005248484.1      TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
XM_005276789.1      TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
XM_005248594.1      TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
XM_005276798.1      TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
XM_005276788.1      TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
XM_005248590.1      TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
NM_001515.3         TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
NM_001042490.3      TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
XM_005276784.1      TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
XM_005248593.1      TCTTTATCTGACCAGGATGCAAAACCCTCTTTCAGCATGGCGCATTTGGATGGCAATACT
                                                                                

HsCD00022529        ------------------------------------------------------------
NM_001098728.1      GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
XM_005248592.1      GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
XM_005248484.1      GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
XM_005276789.1      GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
XM_005248594.1      GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
XM_005276798.1      GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
XM_005276788.1      GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
XM_005248590.1      GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
NM_001515.3         GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
NM_001042490.3      GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
XM_005276784.1      GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
XM_005248593.1      GAGCCAGGGCTTACATTAGGAGGCTATTTCTGCCCACAGTGTCGGGCAAAGTACTGTGAG
                                                                                

HsCD00022529        ------------------------------------------------------------
NM_001098728.1      CTACCTGTTGAATGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
XM_005248592.1      CTACCTGTTGAATGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
XM_005248484.1      CTACCTGTTGAGTGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
XM_005276789.1      CTACCTGTTGAATGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
XM_005248594.1      CTACCTGTTGAATGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
XM_005276798.1      CTACCTGTTGAATGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
XM_005276788.1      CTACCTGTTGAATGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
XM_005248590.1      CTACCTGTTGAATGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
NM_001515.3         CTACCTGTTGAGTGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
NM_001042490.3      CTACCTGTTGAATGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
XM_005276784.1      CTACCTGTTGAATGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
XM_005248593.1      CTACCTGTTGAATGTAAAATCTGTGGTCTTACTTTGGTGTCTGCTCCCCACTTGGCACGG
                                                                                

HsCD00022529        ------------------------------------------------------------
NM_001098728.1      TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
XM_005248592.1      TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
XM_005248484.1      TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
XM_005276789.1      TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
XM_005248594.1      TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
XM_005276798.1      TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
XM_005276788.1      TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
XM_005248590.1      TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
NM_001515.3         TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
NM_001042490.3      TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
XM_005276784.1      TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
XM_005248593.1      TCTTACCATCATTTGTTTCCTTTGGATGCTTTTCAAGAAATTCCCCTAGAAGAATATAAT
                                                                                

HsCD00022529        ------------------------------------------------------------
NM_001098728.1      GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
XM_005248592.1      GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
XM_005248484.1      GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
XM_005276789.1      GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
XM_005248594.1      GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
XM_005276798.1      GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
XM_005276788.1      GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
XM_005248590.1      GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
NM_001515.3         GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
NM_001042490.3      GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
XM_005276784.1      GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
XM_005248593.1      GGAGAAAGATTTTGTTATGGATGTCAGGGGGAATTGAAAGACCAACATGTTTATGTTTGT
                                                                                

HsCD00022529        ------------------------------------------------------------
NM_001098728.1      GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
XM_005248592.1      GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
XM_005248484.1      GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
XM_005276789.1      GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
XM_005248594.1      GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
XM_005276798.1      GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
XM_005276788.1      GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
XM_005248590.1      GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
NM_001515.3         GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
NM_001042490.3      GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
XM_005276784.1      GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
XM_005248593.1      GCTGTGTGCCAAAATGTTTTCTGTGTGGACTGTGATGTTTTTGTTCATGATTCTCTACAC
                                                                                

HsCD00022529        ------------------------------------------------
NM_001098728.1      TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
XM_005248592.1      TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
XM_005248484.1      TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
XM_005276789.1      TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
XM_005248594.1      TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
XM_005276798.1      TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
XM_005276788.1      TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
XM_005248590.1      TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
NM_001515.3         TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
NM_001042490.3      TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
XM_005276784.1      TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
XM_005248593.1      TGTTGCCCTGGCTGTATTCATAAGATTCCAGCTCCTTCAGGTGTTTGA
                                                                    

Pathways

Reactome : DNA Repair
Reactome : Disease
Reactome : Dual incision reaction in GG-NER
Reactome : Dual incision reaction in TC-NER
Reactome : Epigenetic regulation of gene expression
Reactome : Formation of HIV elongation complex in the absence of HIV Tat
Reactome : Formation of HIV-1 elongation complex containing HIV-1 Tat
Reactome : Formation of RNA Pol II elongation complex
Reactome : Formation of incision complex in GG-NER
Reactome : Formation of the Early Elongation Complex
Reactome : Formation of the HIV-1 Early Elongation Complex
Reactome : Formation of transcription-coupled NER (TC-NER) repair complex
Reactome : Gene Expression
Reactome : Global Genomic NER (GG-NER)
Reactome : HIV Infection
Reactome : HIV Life Cycle
Reactome : HIV Transcription Elongation
Reactome : HIV Transcription Initiation
Reactome : Late Phase of HIV Life Cycle
Reactome : Negative epigenetic regulation of rRNA expression
Reactome : NoRC negatively regulates rRNA expression
Reactome : Nucleotide Excision Repair
Reactome : RNA Pol II CTD phosphorylation and interaction with CE
Reactome : RNA Polymerase I Chain Elongation
Reactome : RNA Polymerase I Promoter Clearance
Reactome : RNA Polymerase I Promoter Escape
Reactome : RNA Polymerase I Transcription
Reactome : RNA Polymerase I Transcription Initiation
Reactome : RNA Polymerase I Transcription Termination
Reactome : RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription
Reactome : RNA Polymerase II HIV Promoter Escape
Reactome : RNA Polymerase II Pre-transcription Events
Reactome : RNA Polymerase II Promoter Escape
Reactome : RNA Polymerase II Transcription
Reactome : RNA Polymerase II Transcription Elongation
Reactome : RNA Polymerase II Transcription Initiation
Reactome : RNA Polymerase II Transcription Initiation And Promoter Clearance
Reactome : RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
Reactome : Tat-mediated elongation of the HIV-1 transcript
Reactome : Transcription
Reactome : Transcription of the HIV genome
Reactome : Transcription-coupled NER (TC-NER)
Reactome : mRNA Capping
WikiPathway : Eukaryotic Transcription Initiation

Protein

UniProt : Q13888

Clone

Cloning Information : 26779
HIP Master Clone ID : 57155
Original Clone ID : FLH026779.01L

Organism


TAX_ID : 9606
Species Specific ID: 2966

Genome

Chromosome : 5
Map Location : 5q13.2
Ensembl : ENSG00000183474

Reagents

Labome : GTF2H2-antibody