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RPL39 (Homo sapiens) in pDNR-Dual (Creator donor/master vector)

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Explanation of Terms


Gene: Gene Symbol:  RPL39
Gene Name:  ribosomal protein L39
Sequence              Map: pDNR-Dual_with_human_insert.pdf
Original Clone ID: FLH027290.01L
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pDNR-Dual               Format:  FUSION
Source: HIP
Description: None
Comments: None
Mutation/
Discrepancy :
No / No
Publications: PMID: 16512675
Title: Functional proteomics approach to investigate the biological activities of cDNAs implicated in breast cancer.
Authors: HIP
HsCD00002870

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 156nts         Open reading frame : 1 to 156
Reference Sequence Alignment

ATGTCTTCTCACAAGACTTTCAGGATTAAGCGATTCCTGGCCAAGAAACAAAAGCAAAAT
CGTCCCATTCCCCAGTGGATTCGGATGAAAACTGGAAATAAAATCAGGTACAACTCCAAA
AGGAGACATTGGAGAAGAACCAAGCTGGGTCTATTG


Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: Sequence Verification
Reference Sequence Annotations:
End on reference sequence 200
Start on reference sequence 45
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
5P GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACACC(ATG-GOI)

3' Linker Sequence:
5p (goi-stop)GGAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  ampicillin
Bacterial Selection Condition:  100 ug/mL ampicillin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pDNR-Dual

pDNR-Dual in advanced viewed

Synonyms: None
Sequencing Primer: Forward:  M13F
Reverse:  Unknown
Description: Recombinational donor/master vector with 6xHN tag ORF, T7 and M13 primer sites; ampicillin resistance; restriction enzyme cloning (into) and recombinational cloning (from).
Comments: The position of features were detemined for the empty form of the vector, which is described in detail on the BD/Clontech website. Subcloning into the MCS was performed using the infusion reaction strategy and some restriction sites in the MCS may be lost after an insert is added.
Size (bp): 4938
Parent Vector: None
Empty Vector: None
Properties: Creator, donor (entry), loxP, multiple cloning site, recombinational cloning, with tag/fusion/marker
Author Name: BD Biosciences Clontech
Publications: None
Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
MCS MCS restriction enzyme-type multiple cloning site 45 129
bacterial origin ColE1 ColE1 (pUC-type) origin of replication 4111 4574
negative selection marker SacB SacB negative selection marker gene (sucrose sensitivity) 1057 2972
primer site M13 primer M13 primer sequencing site 4839 4855
primer site T7 primer T7 RNA Pol primer sequencing site 4865 4883
recombination site loxP site loxP recombination site 1015 1048
recombination site loxP site loxP recombination site 9 42
selectable marker CmR chloramphenicol resistance gene ORF (functional only after recombination of insert into vector with promoter) 986 327
selectable marker AmpR ampicillin resistance gene 3103 3963
splice donor site SD site splice donor site 132 136
tag HN 6xHN epitope tag 141 176

 

  • Gene
  • Pathways
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : RPL39
Symbol Nomenclature : RPL39
SYNONYM : L39; RPL39P42; RPL39_23_1806
Designation : 60S ribosomal protein L39
Full Nomenclature : ribosomal protein L39
GENEID : 6170
GI : 61372021
GenBank Accession : AY891846
HGNC : 10350
MIM : 300899
Vega : OTTHUMG00000022278
Target GenBank: BC001019

 

Reference Sequence Alignment

  

HsCD00002870      ATGTCTTCTCACAAGACTTTCAGGATTAAGCGATTCCTGGCCAAGAAACAAAAGCAAAAT
NM_001000.3       ATGTCTTCTCACAAGACTTTCAGGATTAAGCGATTCCTGGCCAAGAAACAAAAGCAAAAT
NM_052969.1       ATGTCTTCTCACAAGACTTTCACCATTAAGCGATTCCTGGCCAAGAAACAAAAGCAAAAT
                  **********************  ************************************

HsCD00002870      CGTCCCATTCCCCAGTGGATTCGGATGAAAACTGGAAATAAAATCAGGTACAACTCCAAA
NM_001000.3       CGTCCCATTCCCCAGTGGATTCGGATGAAAACTGGAAATAAAATCAGGTACAACTCCAAA
NM_052969.1       CGTCCCATCCCCCAGTGGATTCAGATGAAACCTGGTAGTAAAATCAGGTACAACTCCAAA
                  ******** *************.*******.****:*.**********************

HsCD00002870      AGGAGACATTGGAGAAGAACCAAGCTGGGTCTATTG
NM_001000.3       AGGAGACATTGGAGAAGAACCAAGCTGGGTCTATAA
NM_052969.1       AGGAGGCATTGGAGAAGAACCAAGCTGGGTCTATAA
                  *****.****************************:.

Pathways

Reactome : 3' -UTR-mediated translational regulation
Reactome : Cap-dependent Translation Initiation
Reactome : Disease
Reactome : Eukaryotic Translation Elongation
Reactome : Eukaryotic Translation Initiation
Reactome : Eukaryotic Translation Termination
Reactome : Formation of a pool of free 40S subunits
Reactome : GTP hydrolysis and joining of the 60S ribosomal subunit
Reactome : Gene Expression
Reactome : Influenza Infection
Reactome : Influenza Life Cycle
Reactome : Influenza Viral RNA Transcription and Replication
Reactome : L13a-mediated translational silencing of Ceruloplasmin expression
Reactome : Metabolism of RNA
Reactome : Metabolism of mRNA
Reactome : Metabolism of proteins
Reactome : Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
Reactome : Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Reactome : Nonsense-Mediated Decay (NMD)
Reactome : Peptide chain elongation
Reactome : SRP-dependent cotranslational protein targeting to membrane
Reactome : Translation
Reactome : Viral mRNA Translation
WikiPathway : Cytoplasmic Ribosomal Proteins

Protein

UniProt : P62891
HPRD : 03546

Clone

Cloning Information : 27290
HIP Master Clone ID : 57666
Original Clone ID : FLH027290.01L

Organism


TAX_ID : 9606
Species Specific ID: 6170

Genome

Chromosome : X
Map Location : Xq24
Ensembl : ENSG00000198918

Reagents

Labome : RPL39-antibody