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STYX (Homo sapiens) in pSGX4 (His and Smt3-tagged bacterial expression vector)

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Explanation of Terms


Gene: Gene Symbol:  STYX
Gene Name:  serine/threonine/tyrosine interacting protein
Sequence             
Original Clone ID: 8698a4BSt2p1
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pSGX4               Format:  CLOSED
Source: New York SGX Research Center for Structural Genomics
Description: None
Comments: "N-terminal 6-His and Smt3, cleavable, TOPO; clone failed to grow"
Mutation/
Discrepancy :		 Yes / No
Publications: PMID: 18058037
Title: Structural genomics of protein phosphatases
Authors: PSI
New York SGX Research Center for Structural Genomics
HsCD00292711

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NOT AVAILABLE
No restriction
Special MTA: PSI/Smt3/SUMO

 

Insert sequence: 459nts         Open reading frame : 51 to 509
Reference Sequence Alignment 

AGGATAACGATATTATTGAGGCTCACAGAGAACAGATTGGTGGATCCCTTAGACGAGAGA
TGCAGGAAATTTTACCTGGATTGTTCTTAGGCCCATATTCATCTGCTATGAAAAGCAAGC
TACCTGTACTACAGAAACATGGAATAACCCATATAATATGCATACGACAAAATATTGAAG
CAAACTTTATTAAACCAAACTTTCAGCAGTTATTTAGATATTTAGTCCTGGATATTGCAG
ATAATCCAGTTGAAAATATAATACGTTTTTTCCCTATGACTAAGGAATTTATTGATGGGA
GCTTACAAATGGGAGGAAAAGTTCTTGTGCATTGTAATGCAGGGATCTCCAGAAGTGCAG
CCTTTGTTATTGCATACATTATGGAAACATTTGGAATGAAGTACAGAGATGCTTTTGCTT
ATGTTCAAGAAAGAAGATTTTGTATTAATCCTAATGCTGGATTTGTCCATCAACTTCAGG
AATATGAAGCCATCTACCTAGCAAAATAAGAGTAACTCGAGCACCACCACCACCACCACT
GAGATCCG

Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: Sequence Verification
Reference Sequence Annotations:
End on reference sequence 459
Start on reference sequence 1
Mutations:
G120C;

Discrepancy:
None
5' Linker Sequence: 
ACAGAGAACAGATTGGTGGATCCCTT
3' Linker Sequence: None

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  kanamycin
Bacterial Selection Condition:  50ug/mL kanamycin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Conditions for Gateway-type vectors in recombined (with insert) form and other kanamycin resistant vectors.
Protein Expression Results: SolubleProtein: Protein_Soluble
ProteinExpressed: Protein_Confirmed
ProteinPurified: Protein_Purified
Find experimental protocols in NYSGXRC-8698a
Recommended expression in: BL21(DE3)-Codon+RIL
       DyNA Vector Map

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Vector Name: pSGX4

pSGX4 in advanced viewed
Synonyms: pSGX-4, pSGX4_BS
Sequencing Primer: Forward:  T7
Reverse:  T7 terminator
Description: Bacterial (E. coli) expression vector with T7 promotor, adds N-terminal 6xHis and smt-3 tags, cleavage site; kanamycin resistance; TOPO cloning.
Comments: Modified from pET26b from Novagen. N-terminal 6xHis-tag followed by smt3 fusion protein. Smt3 fusion cloned into NheI and BamHI sites. TOPO adaptation at BamHI and XhoI sites.
Size (bp): 5611
Parent Vector: None
Empty Vector: None
Properties: TOPO Cloning, bacterial expression, in vitro transcription, with tag/fusion/marker
Author Name: New York SGX Research Center for Structural Genomics
Publications: None
Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
TOPO recognition site TOPO TOPO cloning site 5435 5444
bacterial origin ColE ColE1 bacterial origin of replication 1421 2103
gene fragment ROP ROP 2527 2703
promoter T7 T7 promoter 4984 5003
protease cleavage site ULP site ULP cleavage site (recognizes the tertiary structure of SUMO) 5140 5140
repressor protein gene LacI lacI cds 3515 4351
ribosome binding site RBS ribosome binding site (RBS) 5062 5068
selectable marker KanR kanamycin resistance gene 563 1375
tag Smt3 Smt3 tag 5140 5424
tag His 6xHis tag 5083 5100
trxn regulatory element lac operator lac operator 5003 5025
trxn termination sequence T7 term T7 termination sequence 5539 5585

 

  • Gene
  • Protein
  • Clone
  • Experimental
  • Organism
  • Genome

Gene

 

Gene Symbol : STYX
Symbol Nomenclature : STYX
Designation : protein tyrosine phosphatase-like protein|serine/threonine/tyrosine-interacting protein
Full Nomenclature : serine/threonine/tyrosine interacting protein
GENEID : 6815
HGNC : 11447
Vega : OTTHUMG00000140306
Target GenBank: NP_660294

 

Reference Sequence Alignment

  

HsCD00292711        -------------------------AGGATAACGATATTATTGAGGCTCACAGAGAACAG
NM_001130701.1      ATGGAGGACGTGAAGCTGGAGTTCCCTTCCCTTCCACAGTGCAAGGAAGACGCCGAGGAG
NM_145251.3         ATGGAGGACGTGAAGCTGGAGTTCCCTTCCCTTCCACAGTGCAAGGAAGACGCCGAGGAG
                                             .  . .:  .:.: :  .***.: **. .**. **

HsCD00292711        ATTGGTGGATCCCTTAGACGAGAGATGCAGGAAATTTTACCTGGATTGTTCTTAGGCCCA
NM_001130701.1      TGGACCTACCCTATGAGACGAGAGATGCAGGAAATTTTACCTGGATTGTTCTTAGGCCCA
NM_145251.3         TGGACCTACCCTATGAGACGAGAGATGCAGGAAATTTTACCTGGATTGTTCTTAGGCCCA
                    :  .   .. * .* *********************************************

HsCD00292711        TATTCATCTGCTATGAAAAGCAAGCTACCTGTACTACAGAAACATGGAATAACCCATATA
NM_001130701.1      TATTCATCTGCTATGAAAAGCAAGCTACCTGTACTACAGAAACATGGAATAACCCATATA
NM_145251.3         TATTCATCTGCTATGAAAAGCAAGCTACCTGTACTACAGAAACATGGAATAACCCATATA
                    ************************************************************

HsCD00292711        ATATGCATACGACAAAATATTGAAGCAAACTTTATTAAACCAAACTTTCAGCAGTTATTT
NM_001130701.1      ATATGCATACGACAAAATATTGAAGCAAACTTTATTAAACCAAACTTTCAGCAGTTATTT
NM_145251.3         ATATGCATACGACAAAATATTGAAGCAAACTTTATTAAACCAAACTTTCAGCAGTTATTT
                    ************************************************************

HsCD00292711        AGATATTTAGTCCTGGATATTGCAGATAATCCAGTTGAAAATATAATACGTTTTTTCCCT
NM_001130701.1      AGATATTTAGTCCTGGATATTGCAGATAATCCAGTTGAAAATATAATACGTTTTTTCCCT
NM_145251.3         AGATATTTAGTCCTGGATATTGCAGATAATCCAGTTGAAAATATAATACGTTTTTTCCCT
                    ************************************************************

HsCD00292711        ATGACTAAGGAATTTATTGATGGGAGCTTACAAATGGGAGGAAAAGTTCTTGTGCATTGT
NM_001130701.1      ATGACTAAGGAATTTATTGATGGGAGCTTACAAATGGGAGGAAAAGTTCTTGTGCATGGA
NM_145251.3         ATGACTAAGGAATTTATTGATGGGAGCTTACAAATGGGAGGAAAAGTTCTTGTGCATGGA
                    ********************************************************* *:

HsCD00292711        AATGCAGGGATCTCCAGAAGTGCAGCCTTTGTTATTGCATACATTATGGAAACATTTGGA
NM_001130701.1      AATGCAGGGATCTCCAGAAGTGCAGCCTTTGTTATTGCATACATTATGGAAACATTTGGA
NM_145251.3         AATGCAGGGATCTCCAGAAGTGCAGCCTTTGTTATTGCATACATTATGGAAACATTTGGA
                    ************************************************************

HsCD00292711        ATGAAGTACAGAGATGCTTTTGCTTATGTTCAAGAAAGAAGATTTTGTATTAATCCTAAT
NM_001130701.1      ATGAAGTACAGAGATGCTTTTGCTTATGTTCAAGAAAGAAGATTTTGTATTAATCCTAAT
NM_145251.3         ATGAAGTACAGAGATGCTTTTGCTTATGTTCAAGAAAGAAGATTTTGTATTAATCCTAAT
                    ************************************************************

HsCD00292711        GCTGGATTTGTCCATCAACTTCAGGAATATGAAGCCATCTACCTAGCAAAATAAGAGTAA
NM_001130701.1      GCTGGATTTGTCCATCAACTTCAGGAATATGAAGCCATCTACCTAGCAAAATTAACAATA
NM_145251.3         GCTGGATTTGTCCATCAACTTCAGGAATATGAAGCCATCTACCTAGCAAAATTAACAATA
                    ****************************************************:*...::*

HsCD00292711        CTCGAGCACCACCACCACCACCACTGAGATCCG---------------------------
NM_001130701.1      CAGATGATGTCACCACTCCAGATAGAAAGGTCATTATCTGTTCATTCTGGTACCACAGGC
NM_145251.3         CAGATGATGTCACCACTCCAGATAGAAAGGTCATTATCTGTTCATTCTGGTACCACAGGC
                    *: .:*.:  ..*..*:*** .:. .*..  *.                           

HsCD00292711        ------------------------------------------------------------
NM_001130701.1      AGTTTGAAGAGAACACATGAAGAAGAGGATGATTTTGGAACCATGCAAGTGGCGACTGCA
NM_145251.3         AGTTTGAAGAGAACACATGAAGAAGAGGATGATTTTGGAACCATGCAAGTGGCGACTGCA
                                                                                

HsCD00292711        ------------
NM_001130701.1      CAGAATGGCTGA
NM_145251.3         CAGAATGGCTGA

Clone

Cloning Information : 475621
HIP Master Clone ID : 397127
Original Clone ID : 8698a4BSt2p1

Experimental

TargetTrack - Experimental data : NYSGXRC-8698a

Organism


TAX_ID : 9606
Species Specific ID: None

Genome

Chromosome : 14
Ensembl : ENSG00000198252