Gene: |
Gene Symbol:
STYX Gene Name:  serine/threonine/tyrosine interacting protein Sequence |
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Original Clone ID: | 8698a4BSt2p1 |
Keyword: | None |
Species: | Homo sapiens |
Type: | cDNA |
Vector Name: | pSGX4 Format: CLOSED |
Source: | New York SGX Research Center for Structural Genomics |
Description: | None |
Comments: | "N-terminal 6-His and Smt3, cleavable, TOPO; clone failed to grow" |
Mutation/ Discrepancy : |
Yes / No |
Publications: |
PMID: 18058037 Title: Structural genomics of protein phosphatases |
Authors: |
PSI New York SGX Research Center for Structural Genomics |
HsCD00292711 Price: Login for Pricing UNAVAILABLE No restriction Special MTA: PSI/Smt3/SUMO |
Insert sequence: 459nts
Open reading frame : 51 to 509 Reference Sequence Alignment AGGATAACGATATTATTGAGGCTCACAGAGAACAGATTGGTGGATCCCTTAGACGAGAGA
TGCAGGAAATTTTACCTGGATTGTTCTTAGGCCCATATTCATCTGCTATGAAAAGCAAGC
TACCTGTACTACAGAAACATGGAATAACCCATATAATATGCATACGACAAAATATTGAAG
CAAACTTTATTAAACCAAACTTTCAGCAGTTATTTAGATATTTAGTCCTGGATATTGCAG
ATAATCCAGTTGAAAATATAATACGTTTTTTCCCTATGACTAAGGAATTTATTGATGGGA
GCTTACAAATGGGAGGAAAAGTTCTTGTGCATTGTAATGCAGGGATCTCCAGAAGTGCAG
CCTTTGTTATTGCATACATTATGGAAACATTTGGAATGAAGTACAGAGATGCTTTTGCTT
ATGTTCAAGAAAGAAGATTTTGTATTAATCCTAATGCTGGATTTGTCCATCAACTTCAGG
AATATGAAGCCATCTACCTAGCAAAATAAGAGTAACTCGAGCACCACCACCACCACCACT
GAGATCCG
|
Coding Sequence Details | |
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Insert Sequence Verified?: Y | Verification Method: Sequence Verification |
Reference Sequence Annotations: End on reference sequence 459 Start on reference sequence 1 |
|
Mutations: G120C; |
Discrepancy: None |
5' Linker Sequence:
ACAGAGAACAGATTGGTGGATCCCTT |
|
3' Linker Sequence: None |
Distributed in bacterial strain : | DH5-alpha T1 phage resistant |
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Antibiotic Selection: |
Host Type:
bacterial
Marker:
kanamycin Bacterial Selection Condition: 50ug/mL kanamycin Growth Condition: Growth with the single antibiotic in LB at 37 degrees is recommended. Comments: Conditions for Gateway-type vectors in recombined (with insert) form and other kanamycin resistant vectors. |
Protein Expression Results: |
SolubleProtein: Protein_Soluble ProteinExpressed: Protein_Confirmed ProteinPurified: Protein_Purified Find experimental protocols in NYSGXRC-8698a |
Recommended expression in: | BL21(DE3)-Codon+RIL |
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Vector Name: | pSGX4 |
pSGX4 in advanced viewed |
Synonyms: | pSGX-4, pSGX4_BS | |
Sequencing Primer: | Forward:
T7
Reverse: T7 terminator |
|
Description: | Bacterial (E. coli) expression vector with T7 promotor, adds N-terminal 6xHis and smt-3 tags, cleavage site; kanamycin resistance; TOPO cloning. | |
Comments: | Modified from pET26b from Novagen. N-terminal 6xHis-tag followed by smt3 fusion protein. Smt3 fusion cloned into NheI and BamHI sites. TOPO adaptation at BamHI and XhoI sites. | |
Size (bp): | 5611 | |
Parent Vector: | None | |
Empty Vector: | None | |
Properties: | TOPO Cloning, bacterial expression, in vitro transcription, with tag/fusion/marker | |
Author Name: |
New York SGX Research Center for Structural Genomics |
|
Publications: | None | |
Vector Map: |
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Sequence: |
Vector Features:
Type | Name | Description | Start Position | End Position |
---|---|---|---|---|
TOPO recognition site | TOPO | TOPO cloning site | 5435 | 5444 |
bacterial origin | ColE | ColE1 bacterial origin of replication | 1421 | 2103 |
gene fragment | ROP | ROP | 2527 | 2703 |
promoter | T7 | T7 promoter | 4984 | 5003 |
protease cleavage site | ULP site | ULP cleavage site (recognizes the tertiary structure of SUMO) | 5140 | 5140 |
repressor protein gene | LacI | lacI cds | 3515 | 4351 |
ribosome binding site | RBS | ribosome binding site (RBS) | 5062 | 5068 |
selectable marker | KanR | kanamycin resistance gene | 563 | 1375 |
tag | Smt3 | Smt3 tag | 5140 | 5424 |
tag | His | 6xHis tag | 5083 | 5100 |
trxn regulatory element | lac operator | lac operator | 5003 | 5025 |
trxn termination sequence | T7 term | T7 termination sequence | 5539 | 5585 |
- Gene
- Protein
- Clone
- Experimental
- Organism
- Genome
Gene
Gene Symbol : | STYX |
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Symbol Nomenclature : | STYX |
Designation : | protein tyrosine phosphatase-like protein|serine/threonine/tyrosine-interacting protein |
Full Nomenclature : | serine/threonine/tyrosine interacting protein |
GENEID : | 6815 |
HGNC : | 11447 |
Vega : | OTTHUMG00000140306 |
Target GenBank: | NP_660294 |
Reference Sequence Alignment
HsCD00292711 -------------------------AGGATAACGATATTATTGAGGCTCACAGAGAACAG NM_001130701.1 ATGGAGGACGTGAAGCTGGAGTTCCCTTCCCTTCCACAGTGCAAGGAAGACGCCGAGGAG NM_145251.3 ATGGAGGACGTGAAGCTGGAGTTCCCTTCCCTTCCACAGTGCAAGGAAGACGCCGAGGAG . . .: .:.: : .***.: **. .**. ** HsCD00292711 ATTGGTGGATCCCTTAGACGAGAGATGCAGGAAATTTTACCTGGATTGTTCTTAGGCCCA NM_001130701.1 TGGACCTACCCTATGAGACGAGAGATGCAGGAAATTTTACCTGGATTGTTCTTAGGCCCA NM_145251.3 TGGACCTACCCTATGAGACGAGAGATGCAGGAAATTTTACCTGGATTGTTCTTAGGCCCA : . .. * .* ********************************************* HsCD00292711 TATTCATCTGCTATGAAAAGCAAGCTACCTGTACTACAGAAACATGGAATAACCCATATA NM_001130701.1 TATTCATCTGCTATGAAAAGCAAGCTACCTGTACTACAGAAACATGGAATAACCCATATA NM_145251.3 TATTCATCTGCTATGAAAAGCAAGCTACCTGTACTACAGAAACATGGAATAACCCATATA ************************************************************ HsCD00292711 ATATGCATACGACAAAATATTGAAGCAAACTTTATTAAACCAAACTTTCAGCAGTTATTT NM_001130701.1 ATATGCATACGACAAAATATTGAAGCAAACTTTATTAAACCAAACTTTCAGCAGTTATTT NM_145251.3 ATATGCATACGACAAAATATTGAAGCAAACTTTATTAAACCAAACTTTCAGCAGTTATTT ************************************************************ HsCD00292711 AGATATTTAGTCCTGGATATTGCAGATAATCCAGTTGAAAATATAATACGTTTTTTCCCT NM_001130701.1 AGATATTTAGTCCTGGATATTGCAGATAATCCAGTTGAAAATATAATACGTTTTTTCCCT NM_145251.3 AGATATTTAGTCCTGGATATTGCAGATAATCCAGTTGAAAATATAATACGTTTTTTCCCT ************************************************************ HsCD00292711 ATGACTAAGGAATTTATTGATGGGAGCTTACAAATGGGAGGAAAAGTTCTTGTGCATTGT NM_001130701.1 ATGACTAAGGAATTTATTGATGGGAGCTTACAAATGGGAGGAAAAGTTCTTGTGCATGGA NM_145251.3 ATGACTAAGGAATTTATTGATGGGAGCTTACAAATGGGAGGAAAAGTTCTTGTGCATGGA ********************************************************* *: HsCD00292711 AATGCAGGGATCTCCAGAAGTGCAGCCTTTGTTATTGCATACATTATGGAAACATTTGGA NM_001130701.1 AATGCAGGGATCTCCAGAAGTGCAGCCTTTGTTATTGCATACATTATGGAAACATTTGGA NM_145251.3 AATGCAGGGATCTCCAGAAGTGCAGCCTTTGTTATTGCATACATTATGGAAACATTTGGA ************************************************************ HsCD00292711 ATGAAGTACAGAGATGCTTTTGCTTATGTTCAAGAAAGAAGATTTTGTATTAATCCTAAT NM_001130701.1 ATGAAGTACAGAGATGCTTTTGCTTATGTTCAAGAAAGAAGATTTTGTATTAATCCTAAT NM_145251.3 ATGAAGTACAGAGATGCTTTTGCTTATGTTCAAGAAAGAAGATTTTGTATTAATCCTAAT ************************************************************ HsCD00292711 GCTGGATTTGTCCATCAACTTCAGGAATATGAAGCCATCTACCTAGCAAAATAAGAGTAA NM_001130701.1 GCTGGATTTGTCCATCAACTTCAGGAATATGAAGCCATCTACCTAGCAAAATTAACAATA NM_145251.3 GCTGGATTTGTCCATCAACTTCAGGAATATGAAGCCATCTACCTAGCAAAATTAACAATA ****************************************************:*...::* HsCD00292711 CTCGAGCACCACCACCACCACCACTGAGATCCG--------------------------- NM_001130701.1 CAGATGATGTCACCACTCCAGATAGAAAGGTCATTATCTGTTCATTCTGGTACCACAGGC NM_145251.3 CAGATGATGTCACCACTCCAGATAGAAAGGTCATTATCTGTTCATTCTGGTACCACAGGC *: .:*.: ..*..*:*** .:. .*.. *. HsCD00292711 ------------------------------------------------------------ NM_001130701.1 AGTTTGAAGAGAACACATGAAGAAGAGGATGATTTTGGAACCATGCAAGTGGCGACTGCA NM_145251.3 AGTTTGAAGAGAACACATGAAGAAGAGGATGATTTTGGAACCATGCAAGTGGCGACTGCA HsCD00292711 ------------ NM_001130701.1 CAGAATGGCTGA NM_145251.3 CAGAATGGCTGA
Protein
SMART domain : | PTPc_motif : Protein tyrosine phosphatase, catalytic domain motif |
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SMART domain : | DSPc : Dual specificity phosphatase, catalytic domain |
Structural Annotation Wiki : | TOPSAN |
HPRD : | 10258 |
Clone
Cloning Information : | 475621 |
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HIP Master Clone ID : | 397127 |
Original Clone ID : | 8698a4BSt2p1 |
Experimental
TargetTrack - Experimental data : | NYSGXRC-8698a |
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Organism
TAX_ID : | 9606 |
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Species Specific ID: | None |
Genome
Chromosome : | 14 |
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Ensembl : | ENSG00000198252 |