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NEUROD6 (H. sapiens ) in pLenti6.2/V5-DEST (V5-tagged lentiviral mammalian expression vector)

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Explanation of Terms


Gene: Gene Symbol:  NEUROD6
Gene Name:  neuronal differentiation 6
Sequence             
Original Clone ID: FLH268468.01L
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pLenti6.2/V5-DEST               Format:  FUSION
Source: HIP
Description: None
Comments: None
Mutation/
Discrepancy :
No / No
Publications: None
Authors:
HsCD00329732

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 1014nts         Open reading frame : 1 to 1014
Reference Sequence Alignment

ATGTTAACACTACCGTTTGATGAGTCTGTTGTAATGCCAGAATCCCAGATGTGCAGAAAG
TTTTCTAGAGAATGCGAGGACCAGAAGCAAATTAAGAAGCCAGAAAGCTTTTCCAAACAG
ATTGTCCTTCGAGGAAAGAGCATCAAAAGGGCCCCTGGAGAAGAAACCGAGAAAGAAGAA
GAGGAGGAAGACAGGGAAGAGGAAGATGAAAATGGGTTGCCTAGAAGGAGGGGTCTTAGG
AAAAAAAAGACAACAAAGCTGCGATTGGAAAGGGTCAAGTTCAGGAGACAGGAAGCGAAC
GCGCGCGAGAGGAACAGGATGCACGGCCTCAACGACGCTCTGGACAACTTAAGAAAAGTG
GTCCCCTGTTATTCTAAAACCCAGAAACTGTCCAAAATAGAGACTTTACGACTGGCCAAA
AACTACATCTGGGCACTTTCTGAAATTCTGAGAATCGGCAAGAGACCAGATCTGCTCACA
TTCGTCCAAAACTTATGCAAAGGTCTTTCCCAGCCAACTACAAACTTGGTGGCAGGCTGC
TTGCAGCTCAACGCCAGGAGTTTCATGATGGGTCAGGGTGGGGAGGCTGCACACCACACA
AGGTCACCCTACTCTACCTTCTACCCACCCTACCACAGCCCTGAGCTCACCACTCCCCCA
GGGCATGGGACTCTTGATAATTCCAAGTCCATGAAACCCTACAATTATTGCAGTGCGTAT
GAATCCTTCTATGAAAGTACTTCCCCTGAGTGTGCCAGCCCTCAGTTTGAAGGTCCCTTA
AGTCCTCCCCCAATTAACTATAATGGGATATTTTCCCTGAAGCAAGAAGAAACCTTGGAC
TATGGTAAAAATTACAATTACGGCATGCATTACTGTGCAGTGCCACCCAGGGGTCCCCTT
GGGCAGGGTGCCATGTTCAGGTTGCCCACCGACAGCCACTTCCCTTACGACTTACATCTG
CGCAGCCAATCTCTCACAATGCAAGATGAATTAAATGCAGTTTTTCATAATTTG


Coding Sequence Details
Insert Sequence Verified?: N Verification Method: Insert was fully sequenced in parent vector
Reference Sequence Annotations:
End on reference sequence 1174
Start on reference sequence 161
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
5p GTACAAAAAAGCAGGCTCCACC(atg-goi)

3' Linker Sequence:
5p (goi-stop)GACCCAGCTTTCTTGTAC

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  ampicillin
Host Type:  mammalian    Marker:  blasticidin
Bacterial Selection Condition:  100 ug/mL ampicillin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pLenti6.2/V5-DEST

pLenti6.2V5-DEST in advanced viewed

Synonyms: pLenti6.2/V5-DEST
Sequencing Primer: Forward:  CMV forward
Reverse:  V5 reverse
Description: Lentiviral mammalian expression vector;CMV promoter and C-terminal V5 tag; ampicillin resistance in bacteria; blasticidin resistance in mammalian cells; Gateway recombinational cloning.
Comments: None
Size (bp): 8813
Parent Vector: None
Empty Vector: None
Properties: Gateway, acceptor (destination), lentiviral infection, mammalian expression, recombinational cloning, with tag/fusion/marker
Author Name: Invitrogen
Publications: None
Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
bacterial origin pUC ori pUC origin of replication 7733 8406
death cassette ccdB ccdB death cassette (removed when insert is present) 3767 3976
packaging signal HIV-1 psi HIV-1 psi packaging signal 521 565
poly-A signal SV40 SV40 polyadenylation signal 5639 5770
promoter RSV RSV/5' LTR hybrid promoter 1 410
promoter CMV CMV promoter driving gene of interest 1809 2392
promoter PGK PGK promoter to drive selection marker in mammalian cells 4266 4771
recombination site attR2 attR2 recombinational cloning site 4127 4142
recombination site attR1 attR1 recombinational cloning site 2440 2456
response element HIV-1 RRE HIV-1 Rev response element (RRE) 1075 1308
selectable marker AmpR Ampicillin resistance gene for selection in bacteria 6728 7588
selectable marker BlastR Blasticidin resistance gene in mammalian cells 4849 5249
selectable marker CmR chloramphenicol resistance marker (removed in plasmids with insert) 2673 3329
splice acceptor site 3' splice acceptor two 3' splice acceptors at 1656 and 1684 1656 1656
splice donor site 5' splice donor 5' splice donor 520 520
tag V5 C-terminal V5 epitope tag 4197 4238

 

  • Gene
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : NEUROD6
Symbol Nomenclature : NEUROD6
SYNONYM : Atoh2; MATH2; Math-2; NEX1M; Nex1; bHLHa2
Designation : brain my051 protein|class A basic helix-loop-helix protein 2|neurogenic differentiation factor 6|protein atonal homolog 2
Full Nomenclature : neuronal differentiation 6
GENEID : 63974
Locus Tag : My051
HGNC : 13804
MIM : 611513
Vega : OTTHUMG00000022865
Target GenBank: BC035048

 

Reference Sequence Alignment

  

HsCD00329732      ATGTTAACACTACCGTTTGATGAGTCTGTTGTAATGCCAGAATCCCAGATGTGCAGAAAG
NM_022728.3       ATGTTAACACTACCGTTTGATGAGTCTGTTGTAATGCCAGAATCCCAGATGTGCAGAAAG
                  ************************************************************

HsCD00329732      TTTTCTAGAGAATGCGAGGACCAGAAGCAAATTAAGAAGCCAGAAAGCTTTTCCAAACAG
NM_022728.3       TTTTCTAGAGAATGCGAGGACCAGAAGCAAATTAAGAAGCCAGAAAGCTTTTCCAAACAG
                  ************************************************************

HsCD00329732      ATTGTCCTTCGAGGAAAGAGCATCAAAAGGGCCCCTGGAGAAGAAACCGAGAAAGAAGAA
NM_022728.3       ATTGTCCTTCGAGGAAAGAGCATCAAAAGGGCCCCTGGAGAAGAAACCGAGAAAGAAGAA
                  ************************************************************

HsCD00329732      GAGGAGGAAGACAGGGAAGAGGAAGATGAAAATGGGTTGCCTAGAAGGAGGGGTCTTAGG
NM_022728.3       GAGGAGGAAGACAGGGAAGAGGAAGATGAAAATGGGTTGCCTAGAAGGAGGGGTCTTAGG
                  ************************************************************

HsCD00329732      AAAAAAAAGACAACAAAGCTGCGATTGGAAAGGGTCAAGTTCAGGAGACAGGAAGCGAAC
NM_022728.3       AAAAAAAAGACAACAAAGCTGCGATTGGAAAGGGTCAAGTTCAGGAGACAGGAAGCGAAC
                  ************************************************************

HsCD00329732      GCGCGCGAGAGGAACAGGATGCACGGCCTCAACGACGCTCTGGACAACTTAAGAAAAGTG
NM_022728.3       GCGCGCGAGAGGAACAGGATGCACGGCCTCAACGACGCTCTGGACAACTTAAGAAAAGTG
                  ************************************************************

HsCD00329732      GTCCCCTGTTATTCTAAAACCCAGAAACTGTCCAAAATAGAGACTTTACGACTGGCCAAA
NM_022728.3       GTCCCCTGTTATTCTAAAACCCAGAAACTGTCCAAAATAGAGACTTTACGACTGGCCAAA
                  ************************************************************

HsCD00329732      AACTACATCTGGGCACTTTCTGAAATTCTGAGAATCGGCAAGAGACCAGATCTGCTCACA
NM_022728.3       AACTACATCTGGGCACTTTCTGAAATTCTGAGAATCGGCAAGAGACCAGATCTGCTCACA
                  ************************************************************

HsCD00329732      TTCGTCCAAAACTTATGCAAAGGTCTTTCCCAGCCAACTACAAACTTGGTGGCAGGCTGC
NM_022728.3       TTCGTCCAAAACTTATGCAAAGGTCTTTCCCAGCCAACTACAAACTTGGTGGCAGGCTGC
                  ************************************************************

HsCD00329732      TTGCAGCTCAACGCCAGGAGTTTCATGATGGGTCAGGGTGGGGAGGCTGCACACCACACA
NM_022728.3       TTGCAGCTCAACGCCAGGAGTTTCCTGATGGGTCAGGGTGGGGAGGCTGCACACCACACA
                  ************************.***********************************

HsCD00329732      AGGTCACCCTACTCTACCTTCTACCCACCCTACCACAGCCCTGAGCTCACCACTCCCCCA
NM_022728.3       AGGTCACCCTACTCTACCTTCTACCCACCCTACCACAGCCCTGAGCTCACCACTCCCCCA
                  ************************************************************

HsCD00329732      GGGCATGGGACTCTTGATAATTCCAAGTCCATGAAACCCTACAATTATTGCAGTGCGTAT
NM_022728.3       GGGCATGGGACTCTTGATAATTCCAAGTCCATGAAACCCTACAATTATTGCAGTGCGTAT
                  ************************************************************

HsCD00329732      GAATCCTTCTATGAAAGTACTTCCCCTGAGTGTGCCAGCCCTCAGTTTGAAGGTCCCTTA
NM_022728.3       GAATCCTTCTATGAAAGTACTTCCCCTGAGTGTGCCAGCCCTCAGTTTGAAGGTCCCTTA
                  ************************************************************

HsCD00329732      AGTCCTCCCCCAATTAACTATAATGGGATATTTTCCCTGAAGCAAGAAGAAACCTTGGAC
NM_022728.3       AGTCCTCCCCCAATTAACTATAATGGGATATTTTCCCTGAAGCAAGAAGAAACCTTGGAC
                  ************************************************************

HsCD00329732      TATGGTAAAAATTACAATTACGGCATGCATTACTGTGCAGTGCCACCCAGGGGTCCCCTT
NM_022728.3       TATGGTAAAAATTACAATTACGGCATGCATTACTGTGCAGTGCCACCCAGGGGTCCCCTT
                  ************************************************************

HsCD00329732      GGGCAGGGTGCCATGTTCAGGTTGCCCACCGACAGCCACTTCCCTTACGACTTACATCTG
NM_022728.3       GGGCAGGGTGCCATGTTCAGGTTGCCCACCGACAGCCACTTCCCTTACGACTTACATCTG
                  ************************************************************

HsCD00329732      CGCAGCCAATCTCTCACAATGCAAGATGAATTAAATGCAGTTTTTCATAATTTG
NM_022728.3       CGCAGCCAATCTCTCACAATGCAAGATGAATTAAATGCAGTTTTTCATAATTAA
                  ****************************************************:.

Protein

SMART domain : HLH : helix loop helix domain
UniProt : Q96NK8
UniProt : Q548T9
HPRD : 11387

Clone

Cloning Information : 268468
HIP Master Clone ID : 193503
Original Clone ID : FLH268468.01L

Organism


TAX_ID : 9606
Species Specific ID: 63974

Genome

Chromosome : 7
Map Location : 7p14.3
Ensembl : ENSG00000164600

Reagents

Labome : NEUROD6-antibody