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Detailed Plasmid Information

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Explanation of Terms


Gene: Gene Symbol: 
Gene Name:  None
Sequence             
Original Clone ID: AtR85-21.2
Keyword: None
Species: Agrobacterium tumefaciens
Type: cDNA
Vector Name: pET21_NESG               Format:  FUSION
Source: Northeast Structural Genomics Consortium
Description: None
Comments: None
Mutation/
Discrepancy :
No / Yes
Publications: None
Authors: PSI
Northeast Structural Genomics Consortium
AtCD00335010

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AVAILABLE
No restriction
Special MTA: PSI/NESG

 

Insert sequence: 459nts        
Open reading frame : 1 to 459

ATGTCACGTCCTCCCGTTCCTCCATTCACATGCAAAACTGCAATCGAAAAGGTCCGCCTG
GCCGAAGACGGCTGGAACAGCCGCGATGCCGCCAAGGTCGCCCTCGCCTACACTGTCGAC
ACCCGCTGGCGGAACCGAGTCGAATTCGCGACCAACCGCGAAGAAGCCCAGGCATTTCTG
ACACGCAAGTGGAACAGGGAGCATGAATACCGCCTCATCAAGGAGCTCTGGGCTTTCACC
GGCAATCGCATCGCTGTACGGTACGCCTACGAATATCGCGACGACAACGGCCAGTGGTTC
CGCGCATATGGTAACGAGAACTGGGAATTCGCAGAGGACGGCCTGATGGCGCACCGCCAC
GCATGCATCAACGAAATGCCGATCGCTGAAAGTGATCGCCTCTACCATTGGCCGCTCGGC
CGTCGCCCTGACGACCACCCCAGCCTTACCGACTTGGGC


Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: Sequence Verification
Mutations:
None
Discrepancy:
del@459,3
                                

5' Linker Sequence: None
3' Linker Sequence: None

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  ampicillin
Bacterial Selection Condition:  100 ug/mL ampicillin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results: ProteinPurified: Not_Tested
SolubleProtein: Not_Tested
ProteinExpressed: Tested_Not_Found
Find experimental protocols in AtR85
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pET21_NESG

pET21_NESG in advanced viewed

Synonyms: pET21, pET21-modified, pET21Cc, pET21_NESG
Sequencing Primer: Forward:  T7
Reverse:  T7 terminator
Description: Bacterial (E. coli) expression vector with T7 lac promoter, adds C-terminal 6xHis tag; ampicillin resistance; restriction enzyme cloning.
Comments: Modified Novagen pET vector-common MCS
Size (bp): 5415
Parent Vector: None
Empty Vector: EvNO00336944
Properties: bacterial expression, in vitro transcription, multiple cloning site, with tag/fusion/marker
Author Name: Gaetano T. Montleione
Thomas B. Acton
Northeast Structural Genomics Consortium
Publications: PMID: 15808222
Title: Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium

Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
MCS MCS MCS (includes SphI, XbaI, BamHI, EcoRI, XhoI) 157 253
bacterial origin ori pBR322-type bacterial origin of replication 3180 3862
gene fragment ROP ROP 2580 2756
primer T7 forward T7 forward sequencing primer 283 298
primer T7 reverse T7 reverse sequencing primer 66 84
promoter T7 T7 promoter 280 299
repressor binding site lacO lacO regulatory sequence 258 280
repressor protein gene LacI LacI 752 1768
selectable marker AmpR ampicillin resistance gene 3960 4619
ssDNA origin f1 ori f1 origin 5081 5387
tag His C-terminal 6xHis tag 140 157
trxn termination sequence T7 term T7 termination sequence 68 72

 

  • Protein
  • Clone
  • Experimental

Protein

Structural Annotation Wiki : TOPSAN
Swissprot ID : Q8UJT8_AGRT5

Clone

Cloning Information : 543398
HIP Master Clone ID : 453718
Original Clone ID : AtR85-21.2

Experimental

TargetTrack - Experimental data : AtR85