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AQP8 (Homo sapiens) in pDONR223 (Gateway donor/master vector)

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Explanation of Terms


Gene: Gene Symbol:  AQP8
Gene Name:  aquaporin 8
Sequence             
Original Clone ID: None
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pDONR223               Format:  FUSION
Source: The ORFeome Collaboration
Description: None
Comments: The ORFeome Collaboration entry clone (IMAGE:100072040)
Mutation/
Discrepancy :
No / No
Publications: None
Authors: The ORFeome Collaboration
HsCD00352982

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 765nts         Open reading frame : 1 to 765
Reference Sequence Alignment

ATGTGTGAGCCTGAATTTGGCAATGACAAGGCCAGGGAGCCGAGCGTGGGTGGCAGGTGG
CGAGTGTCCTGGTACGAACGGTTTGTGCAGCCATGTCTGGTCGAACTGCTGGGCTCTGCT
CTCTTCATCTTCATCGGGTGCCTGTCGGTCATTGAGAATGGGACGGACACTGGGCTGCTG
CAGCCGGCCCTGGCCCACGGGCTGGCTTTGGGGCTCGTGATTGCCACGCTGGGGAATATC
AGTGGTGGACACTTCAACCCTGCGGTGTCCCTGGCAGCCATGCTGATCGGAGGCCTCAAC
CTGGTGATGCTCCTCCCGTACTGGGTCTCACAGCTGCTCGGGGGGATGCTCGGGGCTGCC
TTGGCCAAGGCGGTGAGTCCTGAGGAGAGGTTCTGGAATGCATCTGGGGCGGCCTTTGTG
ACAGTCCAGGAGCAGGGGCAGGTGGCAGGGGCGTTGGTGGCAGAGATCATCCTGACGACG
CTGCTGGCCCTGGCTGTATGCATGGGTGCCATCAATGAGAAGACAAAGGGCCCTCTGGCC
CCGTTCTCCATCGGCTTTGCCGTCACCGTGGATATCCTGGCTGGGGGCCCTGTGTCTGGA
GGCTGCATGAATCCCGCCCGTGCTTTTGGACCTGCGGTGGTGGCCAACCACTGGAACTTC
CACTGGATCTACTGGCTGGGCCCACTCCTGGCTGGCCTGCTTGTTGGACTGCTCATTAGG
TGCTTCATTGGAGATGGGAAGACCCGCCTCATCCTGAAGGCTCGG


Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: Sequence Verification
Mutations:
None
Discrepancy:
None
5' Linker Sequence: None
3' Linker Sequence: None

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  spectinomycin
Bacterial Selection Condition:  100 ug/mL spectinomycin
Growth Condition:  Growth at 37 degrees C in LB supplemented with 100 ug/mL spectinomycin.
Comments:  None
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pDONR223

pDONR223 in advanced viewed

Synonyms: None
Sequencing Primer: Forward:  M13F
Reverse:  M13R
Description: Recombinational donor/master vector; spectinomycin resistance; recombinational cloning.
Comments: pDONR223 contains several improvements over the original Donor vector pDONR201. In pDONR223, the universal Forward (Fwd) and Reverse (Rev) sequencing primer sites flank the attP1 and attP2 recombination sites, the replication origin has been improved to increase copy number, and the selectable marker is spectinomycin resistance (instead of kanamycin resistance in pDONR201), which permits the use of either ampicillin or kanamycin resistance markers in Destination vectors.
Size (bp): 5005
Parent Vector: None
Empty Vector: None
Properties: Gateway, donor (entry), recombinational cloning
Author Name: Invitrogen
Publications: None
Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
bacterial origin pBR322 origin pBR322 bacterial origin 4339 4958
death cassette ccdB ccdB negative selection gene (death cassette), LOST in recombined (with insert) form 1200 1409
primer M13 forward M13 forward sequencing primer 536 553
primer M13 reverse M13 reverse sequencing primer 3020 3040
recombination site attL1 attL recombination site 1 present in recombined (with insert) form only 569 652
recombination site attL2 attL recombination site 2 present in recombined (with insert) form only 2896 2983
selectable marker SpectR spectinomycin resistance gene 3471 4262
trxn termination sequence rrnB rrnB T1 and T2 terminator 268 470

 

  • Gene
  • Pathways
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : AQP8
Symbol Nomenclature : AQP8
SYNONYM : AQP-8
Designation : aquaporin-8
Full Nomenclature : aquaporin 8
GENEID : 343
GenBank Accession : 565589
HGNC : 642
MIM : 603750
Vega : OTTHUMG00000097013
Target GenBank: HQ448602

 

Reference Sequence Alignment

  

HsCD00352982      ------------------ATGTGTGAGCCTGAATTTGGCAATGACAAGGCCAGGGAGCCG
NM_001169.2       ATGTCTGGAGAGATAGCCATGTGTGAGCCTGAATTTGGCAATGACAAGGCCAGGGAGCCG
                                    ******************************************

HsCD00352982      AGCGTGGGTGGCAGGTGGCGAGTGTCCTGGTACGAACGGTTTGTGCAGCCATGTCTGGTC
NM_001169.2       AGCGTGGGTGGCAGGTGGCGAGTGTCCTGGTACGAACGGTTTGTGCAGCCATGTCTGGTC
                  ************************************************************

HsCD00352982      GAACTGCTGGGCTCTGCTCTCTTCATCTTCATCGGGTGCCTGTCGGTCATTGAGAATGGG
NM_001169.2       GAACTGCTGGGCTCTGCTCTCTTCATCTTCATCGGGTGCCTGTCGGTCATTGAGAATGGG
                  ************************************************************

HsCD00352982      ACGGACACTGGGCTGCTGCAGCCGGCCCTGGCCCACGGGCTGGCTTTGGGGCTCGTGATT
NM_001169.2       ACGGACACTGGGCTGCTGCAGCCGGCCCTGGCCCACGGGCTGGCTTTGGGGCTCGTGATT
                  ************************************************************

HsCD00352982      GCCACGCTGGGGAATATCAGTGGTGGACACTTCAACCCTGCGGTGTCCCTGGCAGCCATG
NM_001169.2       GCCACGCTGGGGAATATCAGTGGTGGACACTTCAACCCTGCGGTGTCCCTGGCAGCCATG
                  ************************************************************

HsCD00352982      CTGATCGGAGGCCTCAACCTGGTGATGCTCCTCCCGTACTGGGTCTCACAGCTGCTCGGG
NM_001169.2       CTGATCGGAGGCCTCAACCTGGTGATGCTCCTCCCGTACTGGGTCTCACAGCTGCTCGGG
                  ************************************************************

HsCD00352982      GGGATGCTCGGGGCTGCCTTGGCCAAGGCGGTGAGTCCTGAGGAGAGGTTCTGGAATGCA
NM_001169.2       GGGATGCTCGGGGCTGCCTTGGCCAAGGCGGTGAGTCCTGAGGAGAGGTTCTGGAATGCA
                  ************************************************************

HsCD00352982      TCTGGGGCGGCCTTTGTGACAGTCCAGGAGCAGGGGCAGGTGGCAGGGGCGTTGGTGGCA
NM_001169.2       TCTGGGGCGGCCTTTGTGACAGTCCAGGAGCAGGGGCAGGTGGCAGGGGCGTTGGTGGCA
                  ************************************************************

HsCD00352982      GAGATCATCCTGACGACGCTGCTGGCCCTGGCTGTATGCATGGGTGCCATCAATGAGAAG
NM_001169.2       GAGATCATCCTGACGACGCTGCTGGCCCTGGCTGTATGCATGGGTGCCATCAATGAGAAG
                  ************************************************************

HsCD00352982      ACAAAGGGCCCTCTGGCCCCGTTCTCCATCGGCTTTGCCGTCACCGTGGATATCCTGGCT
NM_001169.2       ACAAAGGGCCCTCTGGCCCCGTTCTCCATCGGCTTTGCCGTCACCGTGGATATCCTGGCT
                  ************************************************************

HsCD00352982      GGGGGCCCTGTGTCTGGAGGCTGCATGAATCCCGCCCGTGCTTTTGGACCTGCGGTGGTG
NM_001169.2       GGGGGCCCTGTGTCTGGAGGCTGCATGAATCCCGCCCGTGCTTTTGGACCTGCGGTGGTG
                  ************************************************************

HsCD00352982      GCCAACCACTGGAACTTCCACTGGATCTACTGGCTGGGCCCACTCCTGGCTGGCCTGCTT
NM_001169.2       GCCAACCACTGGAACTTCCACTGGATCTACTGGCTGGGCCCACTCCTGGCTGGCCTGCTT
                  ************************************************************

HsCD00352982      GTTGGACTGCTCATTAGGTGCTTCATTGGAGATGGGAAGACCCGCCTCATCCTGAAGGCT
NM_001169.2       GTTGGACTGCTCATTAGGTGCTTCATTGGAGATGGGAAGACCCGCCTCATCCTGAAGGCT
                  ************************************************************

HsCD00352982      CGG---
NM_001169.2       CGGTGA
                  ***   

Pathways

Reactome : Aquaporin-mediated transport
Reactome : Cellular responses to stress
Reactome : Detoxification of Reactive Oxygen Species
Reactome : Passive transport by Aquaporins
Reactome : Transmembrane transport of small molecules

Protein

UniProt : O94778
HPRD : 04778

Clone

Cloning Information : 565589

Organism


TAX_ID : 9606
Species Specific ID: 343

Genome

Chromosome : 16
Map Location : 16p12
Ensembl : ENSG00000103375

Reagents

Labome : aquaporin-8-antibody