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ARNTL2 (Homo sapiens) in pLX304 (Gateway V5-tagged lentiviral expression vector)

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Explanation of Terms


Gene: Gene Symbol:  ARNTL2
Gene Name:  aryl hydrocarbon receptor nuclear translocator-like 2
Sequence             
Original Clone ID: ccsbBroad304_12315
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pLX304               Format:  FUSION
Source: The ORFeome Collaboration
Description: None
Comments: None
Mutation/
Discrepancy :
No / No
Publications: None
Authors: The ORFeome Collaboration
Dana-Farber Cancer Institute
Broad Institute of Harvard and Massachusetts Institute of Technology (MIT)
David E Hill
David E Root
Harvard Medical School
HsCD00443536

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 1798nts         Open reading frame : 1 to 1798
Reference Sequence Alignment

ATGGCGGCGGAAGAGGAGGCTGCGGCGGGAGGTGAGGTTGCCGGTGGCGAGGCGACGGCC
CCAGGTAAAGTGTTGAGAGAGGAGAACCAGTGCATTGCTCCTGTGGTTTCCAGCCGCGTG
AGTCCAGGGACAAGACCAACAGCTATGGGGTCTTTCAGCTCACACATGACAGAGTTTCCA
CGAAAACGCAAAGGAAGTGATTCAGACCCATCCCAAGAAGCTCATAGCCAAACTGAAAAG
CGGAGGAGAGATAAAATGAATAACCTGATTGAAGAACTGTCTGCAATGATCCCTCAGTGC
AACCCCATGGCGCGTAAACTGGACAAACTTACAGTTTTAAGAATGGCTGTTCAACACTTG
AGATCTTTAAAAGGCTTGACAAATTCTTATGTGGGAAGTAATTATAGACCATCATTTCTT
CAGGATAATGAGCTCAGACATTTAATCCTTAAGACTGCAGAAGGCTTCTTATTTGTGGTT
GGATGTGAAAGAGGAAAAATTCTCTTCGTTTCTAAGTCAGTCTCCAAAATACTTAATTAT
GATCAGGCTAGTTTGACTGGACAAAGCTTATTTGACTTCTTACATCCAAAAGATGTTGCC
AAAGTAAAGGAACAACTTTCTTCTTTTGATATTTCACCAAGAGAAAAGCTAATAGATGCC
AAAACTGGTTTGCAAGTTCACAGTAATCTCCACGCTGGAAGGACACGTGTGTATTCTGGC
TCAAGACGATCTTTTTTCTGTCGGATAAAGAGTTGTAAAATCTCTGTCAAAGAAGAGCAT
GGATGCTTACCCAACTCAAAGAAGAAAGAGCACAGAAAATTCTATACTATCCATTGCACT
GGTTACTTGAGAAGCTGGCCTCCAAATATTGTTGGAATGGAAGAAGAAAGGAACAGTAAG
AAAGACAACAGTAATTTTACCTGCCTTGTGGCCATTGGAAGATTACAGCCATATATTGTT
CCACAGAACAGTGGAGAGATTAATGTGAAACCAACTGAATTTATAACCCGGTTTGCAGTG
AATGGAAAATTTGTCTATGTAGATCAAAGGGCAACAGCGATTTTAGGATATCTGCCTCAG
GAACTTTTGGGAACTTCTTGTTATGAATATTTTCATCAAGATGACCACAATAATTTGACT
GACAAGCACAAAGCAGTTCTACAGAGTAAGGAGAAAATACTTACAGATTCCTACAAATTC
AGAGCAAAAGATGGCTCTTTTGTAACTTTAAAAAGCCAATGGTTTAGTTTCACAAATCCT
TGGACAAAAGAACTGGAATATATTGTATCTGTCAACACTTTAGTTTTGGGACATAGTGAG
CCTGGAGAAGCATCATTTTTACCTTGTAGCTCTCAATCATCAGAAGAATCCTCTAGACAG
TCCTGTATGAGTGTACCTGGAATGTCTACTGGAACAGTACTTGGTGCTGGTAGTATTGGA
ACAGATATTGCAAATGAAATTCTGGATTTACAGAGGTTACAGTCTTCTTCATACCTTGAT
GATTCGAGTCCAACAGGTTTAATGAAAGATACTCATACTGTAAACTGCAGGAGTATGTCA
AATAAGGAGTTGTTTCCACCAAGTCCTTCTGAAATGGGGGAGCTAGAGGCTACCAGGCAA
AACCAGAGTACTGTTGCTGTCCACAGCCATGAGCCACTCCTCAGTGATGGTGCACAGTTG
GATTTCGATGCCCTATGTGACAATGATGACACAGCCATGGCTGCATTTATGAATTACTTA
GAAGCAGAGGGGGGCCTGGGAGACCCTGGGGACTTCAGTGACATCCAGTGGACCCTC


Coding Sequence Details
Insert Sequence Verified?: N Verification Method: Verified by the ORFeome collaboration
Mutations:
None
Discrepancy:
None
5' Linker Sequence: None
3' Linker Sequence: None

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  ampicillin
Host Type:  mammalian    Marker:  blasticidin
Bacterial Selection Condition:  100 ug/mL ampicillin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pLX304

pLX304 in advanced viewed

Synonyms: None
Sequencing Primer: Forward:  CMV forward
Reverse:  Unknown
Description: Gateway compatible lentiviral vector with a C-terminal V5 tag and CMV promoter for mammalian cell expression; blasticidin resistance in mammalian cells; ampicillin resistance in bacteria; Gateway cloning.
Comments: None
Size (bp): 9377
Parent Vector: None
Empty Vector: None
Properties: Gateway, acceptor (destination), lentiviral infection, recombinational cloning, with tag/fusion/marker
Author Name: David Root
Publications: PMID: 21706014
Title: A public genome-scale lentiviral expression library of human ORFs

Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
polypurine tract cPPT human immunodeficiency virus type 1 central polypurine tract 3027 3042
promoter T7 T7 promoter 3690 3672
promoter CMV CMV promoter 14 566
recombination site attR1 595 719
recombination site attR2 2282 2297
selectable marker CAT CAT/CamR Chloramphenical resistance 828 1487
selectable marker ccdB Control of cell death B gene 1829 2134
selectable marker AmpR Ampicillin resistance gene 4444 5304
selectable marker BlastR Blasticidin resistance gene 8753 9148
tag V5 C-terminal V5 tag 2301 2342
trxn regulatory element WPRE woodchuck hepatitis post-transcriptional regulatory element 2386 2961

 

  • Gene
  • Pathways
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : ARNTL2
Symbol Nomenclature : ARNTL2
SYNONYM : BMAL2; CLIF; MOP9; PASD9; bHLHe6
Designation : CYCLE-like factor|PAS domain-containing protein 9|aryl hydrocarbon receptor nuclear translocator-like protein 2|basic-helix-loop-helix-PAS protein MOP9|brain and muscle ARNT-like 2|class E basic helix-loop-helix protein 6|member of PAS protein 9|transcription factor BMAL2
Full Nomenclature : aryl hydrocarbon receptor nuclear translocator-like 2
GENEID : 56938
HGNC : 18984
MIM : 614517
Target GenBank: None

 

Reference Sequence Alignment

  

HsCD00443536        ATGGCGGCGGAAGAGGAGGCTGCGGCGGGAGGTGAGGTTGCCGGTGGCGAGGCGACGGCC
NM_001248002.1      ATGGCGGCGGAAGAGGAGGCTGCGGCGGGAG-----------------------------
NM_001248003.1      ATGGCGGCGGAAGAGGAGGCTGCGGCGGGAGGTGAGGTTGCCGGTGGCGAGGCGACGGCC
NM_001248004.1      ATGGCGGCGGAAGAGGAGGCTGCGGCGGGAG-----------------------------
NM_020183.4         ATGGCGGCGGAAGAGGAGGCTGCGGCGGGAG-----------------------------
NM_001248005.1      ATGGCGGCGGAAGAGGAGGCTGCGGCGGGAGGTGAGGTTGCCGGTGGCGAGGCGACGGCC
                    *******************************                             

HsCD00443536        CCAGGTAAAGTGTTGAGAGAGGAGAACCAGTGCATTGCTCCTGTGGTTTCCAGCCGCGTG
NM_001248002.1      ----GTAAAGTGTTGAGAGAGGAGAACCAGTGCATTGCTCCTGTGGTTTCCAGCCGCGTG
NM_001248003.1      CCAGGTAAAGTGTTGAGAGAGGAGAACCAGTGCATTGCTCCTGTGGTTTCCAGCCGCGTG
NM_001248004.1      ----GTAAAGTGTTGAGAGAGGAGAACCAGTGCATTGCTCCTGTGGTTTCCAGCCGCGTG
NM_020183.4         ----GTAAAGTGTTGAGAGAGGAGAACCAGTGCATTGCTCCTGTGGTTTCCAGCCGCGTG
NM_001248005.1      CCAGGTAAAGTGTTGAGAGAGGAGAACCAGTGCATTGCTCCTGTGGTTTCCAGCCGCGTG
                        ********************************************************

HsCD00443536        AGTCCAGGGACAAGACCAACAGCTATGGGGTCTTTCAGCTCACACATGACAGAGTTTCCA
NM_001248002.1      AGTCCAGGGACAAGACCAACAGCTATGGGGTCTTTCAGCTCACACATGACAGAGTTTCCA
NM_001248003.1      AGTCCAGGGACAAGACCAACAGCTATGGGGTCTTTCAGCTCACACATGACAGAGTTTCCA
NM_001248004.1      AGTCCAGGGACAAGACCAACAGCTATGGGGTCTTTCAGCTCACACATGACAGAGTTTCCA
NM_020183.4         AGTCCAGGGACAAGACCAACAGCTATGGGGTCTTTCAGCTCACACATGACAGAGTTTCCA
NM_001248005.1      AGTCCAGGGACAAGACCAACAGCTATGGGGTCTTTCAGCTCACACATGACAGAGTTTCCA
                    ************************************************************

HsCD00443536        CGAAAACGCAAAGGAAGTGATTCAGACCCATCCCAAGAAG--------------------
NM_001248002.1      CGAAAACGCAAAGGAAGTGATTCAGACCCATCCCAGTCAGGAATCATGACAGAAAAAGTG
NM_001248003.1      CGAAAACGCAAAGGAAGTGATTCAGACCCATCCCAAGAAG--------------------
NM_001248004.1      CGAAAACGCAAAGGAAGTGATTCAGACCCATCCCAAGAAG--------------------
NM_020183.4         CGAAAACGCAAAGGAAGTGATTCAGACCCATCCCAGTCAGGAATCATGACAGAAAAAGTG
NM_001248005.1      CGAAAACGCAAAGGAAGTGATTCAGACCCATCCCAAGAAG--------------------
                    ***********************************. .**                    

HsCD00443536        ------------------------------------------------------------
NM_001248002.1      GTGGAAAAGCTTTCTCAGAATCCCCTTACCTATCTTCTTTCAACAAGGATAGAAATATCA
NM_001248003.1      ------------------------------------------------------------
NM_001248004.1      ------------------------------------------------------------
NM_020183.4         GTGGAAAAGCTTTCTCAGAATCCCCTTACCTATCTTCTTTCAACAAGGATAGAAATATCA
NM_001248005.1      ------------------------------------------------------------
                                                                                

HsCD00443536        ------------------------------------------------------------
NM_001248002.1      GCCTCCAGTG------------------------------------------GCAGCAGA
NM_001248003.1      ------------------------------------------------------------
NM_001248004.1      ------------------------------------------------------------
NM_020183.4         GCCTCCAGTGGCAGCAGAGTGGAAGATGGTGAACACCAAGTTAAAATGAAGGCCTTCAGA
NM_001248005.1      ------------------------------------------------------------
                                                                                

HsCD00443536        ----CTCATAGCCAAACTGAAAAGCGGAGGAGAGATAAAATGAATAACCTGATTGAAGAA
NM_001248002.1      GAAGCTCATAGCCAAACTGAAAAGCGGAGGAGAGATAAAATGAATAACCTGATTGAAGAA
NM_001248003.1      ----CTCATAGCCAAACTGAAAAGCGGAGGAGAGATAAAATGAATAACCTGATTGAAGAA
NM_001248004.1      ----CTCATAGCCAAACTGAAAAGCGGAGGAGAGATAAAATGAATAACCTGATTGAAGAA
NM_020183.4         GAAGCTCATAGCCAAACTGAAAAGCGGAGGAGAGATAAAATGAATAACCTGATTGAAGAA
NM_001248005.1      ----CTCATAGCCAAACTGAAAAGCGGAGGAGAGATAAAATGAATAACCTGATTGAAGAA
                        ********************************************************

HsCD00443536        CTGTCTGCAATGATCCCTCAGTGCAACCCCATGGCGCGTAAACTGGACAAACTTACAGTT
NM_001248002.1      CTGTCTGCAATGATCCCTCAGTGCAACCCCATGGCGCGTAAACTGGACAAACTTACAGTT
NM_001248003.1      CTGTCTGCAATGATCCCTCAGTGCAACCCCATGGCGCGTAAACTGGACAAACTTACAGTT
NM_001248004.1      CTGTCTGCAATGATCCCTCAGTGCAACCCCATGGCGCGTAAACTGGACAAACTTACAGTT
NM_020183.4         CTGTCTGCAATGATCCCTCAGTGCAACCCCATGGCGCGTAAACTGGACAAACTTACAGTT
NM_001248005.1      CTGTCTGCAATGATCCCTCAGTGCAACCCCATGGCGCGTAAACTGGACAAACTTACAGTT
                    ************************************************************

HsCD00443536        TTAAGAATGGCTGTTCAACACTTGAGATCTTTAAAAGGCTTGACAAATTCTTATGTGGGA
NM_001248002.1      TTAAGAATGGCTGTTCAACACTTGAGATCTTTAAAAGGCTTGACAAATTCTTATGTGGGA
NM_001248003.1      TTAAGAATGGCTGTTCAACACTTGAGATCTTTAAAAGGCTTGACAAATTCTTATGTGGGA
NM_001248004.1      TTAAGAATGGCTGTTCAACACTTGAGATCTTTAAAAGGCTTGACAAATTCTTATGTGGGA
NM_020183.4         TTAAGAATGGCTGTTCAACACTTGAGATCTTTAAAAGGCTTGACAAATTCTTATGTGGGA
NM_001248005.1      TTAAGAATGGCTGTTCAACACTTGAGATCTTTAAAAGGCTTGACAAATTCTTATGTGGGA
                    ************************************************************

HsCD00443536        AGTAATTATAGACCATCATTTCTTCAGGATAATGAGCTCAGACATTTAATCCTTAAGACT
NM_001248002.1      AGTAATTATAGACCATCATTTCTTCAGGATAATGAGCTCAGACATTTAATCCTTAAGACT
NM_001248003.1      AGTAATTATAGACCATCATTTCTTCAGGATAATGAGCTCAGACATTTAATCCTTAAGACT
NM_001248004.1      AGTAATTATAGACCATCATTTCTTCAGGATAATGAGCTCAGACATTTAATCCTTAAGACT
NM_020183.4         AGTAATTATAGACCATCATTTCTTCAGGATAATGAGCTCAGACATTTAATCCTTAAGACT
NM_001248005.1      AGTAATTATAGACCATCATTTCTTCAGGATAATGAGCTCAGACATTTAATCCTTAAGACT
                    ************************************************************

HsCD00443536        GCAGAAGGCTTCTTATTTGTGGTTGGATGTGAAAGAGGAAAAATTCTCTTCGTTTCTAAG
NM_001248002.1      GCAGAAGGCTTCTTATTTGTGGTTGGATGTGAAAGAGGAAAAATTCTCTTCGTTTCTAAG
NM_001248003.1      GCAGAAGGCTTCTTATTTGTGGTTGGATGTGAAAGAGGAAAAATTCTCTTCGTTTCTAAG
NM_001248004.1      GCAGAAGGCTTCTTATTTGTGGTTGGATGTGAAAGAGGAAAAATTCTCTTCGTTTCTAAG
NM_020183.4         GCAGAAGGCTTCTTATTTGTGGTTGGATGTGAAAGAGGAAAAATTCTCTTCGTTTCTAAG
NM_001248005.1      GCAGAAGGCTTCTTATTTGTGGTTGGATGTGAAAGAGGAAAAATTCTCTTCGTTTCTAAG
                    ************************************************************

HsCD00443536        TCAGTCTCCAAAATACTTAATTATGATCAGGCTAGTTTGACTGGACAAAGCTTATTTGAC
NM_001248002.1      TCAGTCTCCAAAATACTTAATTATGATCAGGCTAGTTTGACTGGACAAAGCTTATTTGAC
NM_001248003.1      TCAGTCTCCAAAATACTTAATTATGATCAGGCTAGTTTGACTGGACAAAGCTTATTTGAC
NM_001248004.1      TCAGTCTCCAAAATACTTAATTATGATCAGGCTAGTTTGACTGGACAAAGCTTATTTGAC
NM_020183.4         TCAGTCTCCAAAATACTTAATTATGATCAGGCTAGTTTGACTGGACAAAGCTTATTTGAC
NM_001248005.1      TCAGTCTCCAAAATACTTAATTATGATCAGGCTAGTTTGACTGGACAAAGCTTATTTGAC
                    ************************************************************

HsCD00443536        TTCTTACATCCAAAAGATGTTGCCAAAGTAAAGGAACAACTTTCTTCTTTTGATATTTCA
NM_001248002.1      TTCTTACATCCAAAAGATGTTGCCAAAGTAAAGGAACAACTTTCTTCTTTTGATATTTCA
NM_001248003.1      TTCTTACATCCAAAAGATGTTGCCAAAGTAAAGGAACAACTTTCTTCTTTTGATATTTCA
NM_001248004.1      TTCTTACATCCAAAAGATGTTGCCAAAGTAAAGGAACAACTTTCTTCTTTTGATATTTCA
NM_020183.4         TTCTTACATCCAAAAGATGTTGCCAAAGTAAAGGAACAACTTTCTTCTTTTGATATTTCA
NM_001248005.1      TTCTTACATCCAAAAGATGTTGCCAAAGTAAAGGAACAACTTTCTTCTTTTGATATTTCA
                    ************************************************************

HsCD00443536        CCAAGAGAAAAGCTAATAGATGCCAAAACTGGTTTGCAAGTTCACAGTAATCTCCACGCT
NM_001248002.1      CCAAGAGAAAAGCTAATAGATGCCAAAACTGGTTTGCAAGTTCACAGTAATCTCCACGCT
NM_001248003.1      CCAAGAGAAAAGCTAATAGATGCCAAAACTGGTTTGCAAGTTCACAGTAATCTCCACGCT
NM_001248004.1      CCAAGAGAAAAGCTAATAGATGCCAAAACTGGTTTGCAAGTTCACAGTAATCTCCACGCT
NM_020183.4         CCAAGAGAAAAGCTAATAGATGCCAAAACTGGTTTGCAAGTTCACAGTAATCTCCACGCT
NM_001248005.1      CCAAGAGAAAAGCTAATAGATGCCAAAACTGGTTTGCAAGTTCACAGTAATCTCCACGCT
                    ************************************************************

HsCD00443536        GGAAGGACACGTGTGTATTCTGGCTCAAGACGATCTTTTTTCTGTCGGATAAAGAGTTGT
NM_001248002.1      GGAAGGACACGTGTGTATTCTGGCTCAAGACGATCTTTTTTCTGTCGGATAAAGAGTTGT
NM_001248003.1      GGAAGGACACGTGTGTATTCTGGCTCAAGACGATCTTTTTTCTGTCGGATAAAGAGTTGT
NM_001248004.1      GGAAGGACACGTGTGTATTCTGGCTCAAGACGATCTTTTTTCTGTCGGATAAAGAGTTGT
NM_020183.4         GGAAGGACACGTGTGTATTCTGGCTCAAGACGATCTTTTTTCTGTCGGATAAAGAGTTGT
NM_001248005.1      GGAAGGACACGTGTGTATTCTGGCTCAAGACGATCTTTTTTCTGTCGGATAAAGAGTTGT
                    ************************************************************

HsCD00443536        AAAATCTCTGTCAAAGAAGAGCATGGATGCTTACCCAACTCAAAGAAGAAAGAGCACAGA
NM_001248002.1      AAAATCTCTGTCAAAGAAGAGCATGGATGCTTACCCAACTCAAAGAAGAAAGAGCACAGA
NM_001248003.1      AAAATCTCTGTCAAAGAAGAGCATGGATGCTTACCCAACTCAAAGAAGAAAGAGCACAGA
NM_001248004.1      AAAATCTCTGTCAAAGAAGAGCATGGATGCTTACCCAACTCAAAGAAGAAAGAGCACAGA
NM_020183.4         AAAATCTCTGTCAAAGAAGAGCATGGATGCTTACCCAACTCAAAGAAGAAAGAGCACAGA
NM_001248005.1      AAAATCTCTGTCAAAGAAGAGCATGGATGCTTACCCAACTCAAAGAAGAAAGAGCACAGA
                    ************************************************************

HsCD00443536        AAATTCTATACTATCCATTGCACTGGTTACTTGAGAAGCTGGCCTCCAAATATTGTTGGA
NM_001248002.1      AAATTCTATACTATCCATTGCACTGGTTACTTGAGAAGCTGGCCTCCAAATATTGTTGGA
NM_001248003.1      AAATTCTATACTATCCATTGCACTGGTTACTTGAGAAGCTGGCCTCCAAATATTGTTGGA
NM_001248004.1      AAATTCTATACTATCCATTGCACTGGTTACTTGAGAAGCTGGCCTCCAAATATTGTTGGA
NM_020183.4         AAATTCTATACTATCCATTGCACTGGTTACTTGAGAAGCTGGCCTCCAAATATTGTTGGA
NM_001248005.1      AAATTCTATACTATCCATTGCACTGGTTACTTGAGAAGCTGGCCTCCAAATATTGTTGGA
                    ************************************************************

HsCD00443536        ATGGAAGAAGAAAGGAACAGTAAGAAAGACAACAGTAATTTTACCTGCCTTGTGGCCATT
NM_001248002.1      ATGGAAGAAGAAAGGAACAGTAAGAAAGACAACAGTAATTTTACCTGCCTTGTGGCCATT
NM_001248003.1      ATGGAAGAAGAAAGGAACAGTAAGAAAGACAACAGTAATTTTACCTGCCTTGTGGCCATT
NM_001248004.1      ATGGAAGAAGAAAGGAACAGTAAGAAAGACAACAGTAATTTTACCTGCCTTGTGGCCATT
NM_020183.4         ATGGAAGAAGAAAGGAACAGTAAGAAAGACAACAGTAATTTTACCTGCCTTGTGGCCATT
NM_001248005.1      ATGGAAGAAGAAAGGAACAGTAAGAAAGACAACAGTAATTTTACCTGCCTTGTGGCCATT
                    ************************************************************

HsCD00443536        GGAAGATTACAGCCATATATTGTTCCACAGAACAGTGGAGAGATTAATGTGAAACCAACT
NM_001248002.1      GGAAGATTACAGCCATATATTGTTCCACAGAACAGTGGAGAGATTAATGTGAAACCAACT
NM_001248003.1      GGAAGATTACAGCCATATATTGTTCCACAGAACAGTGGAGAGATTAATGTGAAACCAACT
NM_001248004.1      GGAAGATTACAGCCATATATTGTTCCACAGAACAGTGGAGAGATTAATGTGAAACCAACT
NM_020183.4         GGAAGATTACAGCCATATATTGTTCCACAGAACAGTGGAGAGATTAATGTGAAACCAACT
NM_001248005.1      GGAAGATTACAGCCATATATTGTTCCACAGAACAGTGGAGAGATTAATGTGAAACCAACT
                    ************************************************************

HsCD00443536        GAATTTATAACCCGGTTTGCAGTGAATGGAAAATTTGTCTATGTAGATCAAAGGGCAACA
NM_001248002.1      GAATTTATAACCCGGTTTGCAGTGAATGGAAAATTTGTCTATGTAGATCAAAGGGCAACA
NM_001248003.1      GAATTTATAACCCGGTTTGCAGTGAATGGAAAATTTGTCTATGTAGATCAAAGGGCAACA
NM_001248004.1      GAATTTATAACCCGGTTTGCAGTGAATGGAAAATTTGTCTATGTAGATCAAAGGGCAACA
NM_020183.4         GAATTTATAACCCGGTTTGCAGTGAATGGAAAATTTGTCTATGTAGATCAAAGGGCAACA
NM_001248005.1      GAATTTATAACCCGGTTTGCAGTGAATGGAAAATTTGTCTATGTAGATCAAAGGGCAACA
                    ************************************************************

HsCD00443536        GCGATTTTAGGATATCTGCCTCAGGAACTTTTGGGAACTTCTTGTTATGAATATTTTCAT
NM_001248002.1      GCGATTTTAGGATATCTGCCTCAGGAACTTTTGGGAACTTCTTGTTATGAATATTTTCAT
NM_001248003.1      GCGATTTTAGGATATCTGCCTCAGGAACTTTTGGGAACTTCTTGTTATGAATATTTTCAT
NM_001248004.1      GCGATTTTAGGATATCTGCCTCAGGAACTTTTGGGAACTTCTTGTTATGAATATTTTCAT
NM_020183.4         GCGATTTTAGGATATCTGCCTCAGGAACTTTTGGGAACTTCTTGTTATGAATATTTTCAT
NM_001248005.1      GCGATTTTAGGATATCTGCCTCAGGAACTTTTGGGAACTTCTTGTTATGAATATTTTCAT
                    ************************************************************

HsCD00443536        CAAGATGACCACAATAATTTGACTGACAAGCACAAAGCAGTTCTACAGAGTAAGGAGAAA
NM_001248002.1      CAAGATGACCACAATAATTTGACTGACAAGCACAAAGCAGTTCTACAGAGTAAGGAGAAA
NM_001248003.1      CAAGATGACCACAATAATTTGACTGACAAGCACAAAGCAGTTCTACAGAGTAAGGAGAAA
NM_001248004.1      CAAGATGACCACAATAATTTGACTGACAAGCACAAAGCAGTTCTACAGAGTAAGGAGAAA
NM_020183.4         CAAGATGACCACAATAATTTGACTGACAAGCACAAAGCAGTTCTACAGAGTAAGGAGAAA
NM_001248005.1      CAAGATGACCACAATAATTTGACTGACAAGCACAAAGCAGTTCTACAGAGTAAGGAGAAA
                    ************************************************************

HsCD00443536        ATACTTACAGATTCCTACAAATTCAGAGCAAAAGATGGCTCTTTTGTAACTTTAAAAAGC
NM_001248002.1      ATACTTACAGATTCCTACAAATTCAGAGCAAAAGATGGCTCTTTTGTAACTTTAAAAAGC
NM_001248003.1      ATACTTACAGATTCCTACAAATTCAGAGCAAAAGATGGCTCTTTTGTAACTTTAAAAAGC
NM_001248004.1      ATACTTACAGATTCCTACAAATTCAGAGCAAAAGATGGCTCTTTTGTAACTTTAAAAAGC
NM_020183.4         ATACTTACAGATTCCTACAAATTCAGAGCAAAAGATGGCTCTTTTGTAACTTTAAAAAGC
NM_001248005.1      ATACTTACAGATTCCTACAAATTCAGAGCAAAAGATGGCTCTTTTGTAACTTTAAAAAGC
                    ************************************************************

HsCD00443536        CAATGGTTTAGTTTCACAAATCCTTGGACAAAAGAACTGGAATATATTGTATCTGTCAAC
NM_001248002.1      CAATGGTTTAGTTTCACAAATCCTTGGACAAAAGAACTGGAATATATTGTATCTGTCAAC
NM_001248003.1      CAATGGTTTAGTTTCACAAATCCTTGGACAAAAGAACTGGAATATATTGTATCTGTCAAC
NM_001248004.1      CAATGGTTTAGTTTCACAAATCCTTGGACAAAAGAACTGGAATATATTGTATCTGTCAAC
NM_020183.4         CAATGGTTTAGTTTCACAAATCCTTGGACAAAAGAACTGGAATATATTGTATCTGTCAAC
NM_001248005.1      CAATGGTTTAGTTTCACAAATCCTTGGACAAAAGAACTGGAATATATTGTATCTGTCAAC
                    ************************************************************

HsCD00443536        ACTTTAGTTTTGGGACATAGTGAGCCTGGAGAAGCATCATTTTTACCTTGTAGCTCTCAA
NM_001248002.1      ACTTTAGTTTTGGGACATAGTGAGCCTGGAGAAGCATCATTTTTACCTTGTAGCTCTCAA
NM_001248003.1      ACTTTAGTTTTGGGACATAGTGAGCCTGGAGAAGCATCATTTTTACCTTGTAGCTCTCAA
NM_001248004.1      ACTTTAGTTTTGGGACATAGTGAGCCTGGAGAAGCATCATTTTTACCTTGTAGCTCTCAA
NM_020183.4         ACTTTAGTTTTGGGACATAGTGAGCCTGGAGAAGCATCATTTTTACCTTGTAGCTCTCAA
NM_001248005.1      ACTTTAGTTTTGGGACATAGTGAGCCTGGAGAAGCATCATTTTTACCTTGTAGCTCTCAA
                    ************************************************************

HsCD00443536        TCATCAGAAGAATCCTCTAGACAGTCCTGTATGAGTGTACCTGGAATGTCTACTGGAACA
NM_001248002.1      TCATCAGAAGAATCCTCTAGACAGTCCTGTATGAGTGTACCTGGAATGTCTACTGGAACA
NM_001248003.1      TCATCAGAAGAATCCTCTAGACAGTCCTGTATGAGTGTACCTGGAATGTCTACTGGAACA
NM_001248004.1      TCATCAGAAGAATCCTCTAGACAGTCCTGTATGAGTGTACCTGGAATGTCTACTGGAACA
NM_020183.4         TCATCAGAAGAATCCTCTAGACAGTCCTGTATGAGTGTACCTGGAATGTCTACTGGAACA
NM_001248005.1      TCATCAGAAGAATCCTCTAGACAGTCCTGTATGAGTGTACCTGGAATGTCTACTGGAACA
                    ************************************************************

HsCD00443536        GTACTTGGTGCTGGTAGTATTGGAACAGATATTGCAAATGAAATTCTGGATTTACAGAGG
NM_001248002.1      GTACTTGGTGCTGGTAGTATTGGAACAGATATTGCAAATGAAATTCTGGATTTACAGAGG
NM_001248003.1      GTACTTGGTGCTGGTAGTATTGGAACAGATATTGCAAATGAAATTCTGGATTTACAGAGG
NM_001248004.1      GTACTTGGTGCTGGTAGTATTGGAACAGATATTGCAAATGAAATTCTGGATTTACAGAGG
NM_020183.4         GTACTTGGTGCTGGTAGTATTGGAACAGATATTGCAAATGAAATTCTGGATTTACAGAGG
NM_001248005.1      GTACTTGGTGCTGGTAGTATTGGAACAGATATTGCAAATGAAATTCTGGATTTACAGAGG
                    ************************************************************

HsCD00443536        TTACAGTCTTCTTCATACCTTGATGATTCGAGTCCAACAGGTTTAATGAAAGATACTCAT
NM_001248002.1      TTACAGTCTTCTTCATACCTTGATGATTCGAGTCCAACAGGTTTAATGAAAGATACTCAT
NM_001248003.1      TTACAGTCTTCTTCATACCTTGATGATTCGAGTCCAACAGGTTTAATGAAAGATACTCAT
NM_001248004.1      TTACAGTCTTCTTCATACCTTGATGATTCGAGTCCAACAGGTTTAATGAAAGATACTCAT
NM_020183.4         TTACAGTCTTCTTCATACCTTGATGATTCGAGTCCAACAGGTTTAATGAAAGATACTCAT
NM_001248005.1      TTACAGTCTTCTTCATACCTTGATGATTCGAGTCCAACAGGTTTAATGAAAGATACTCAT
                    ************************************************************

HsCD00443536        ACTGTAAACTGCAGGAGTATGTCAAATAAGGAGTTGTTTCCACCAAGTCCTTCTGAAATG
NM_001248002.1      ACTGTAAACTGCAGGAGTATGTCAAATAAGGAGTTGTTTCCACCAAGTCCTTCTGAAATG
NM_001248003.1      ACTGTAAACTGCAGGAGTATGTCAAATAAGGAGTTGTTTCCACCAAGTCCTTCTGAAATG
NM_001248004.1      ACTGTAAACTGCAGGAGTATGTCAAATAAGGAGTTGTTTCCACCAAGTCCTTCTGAAATG
NM_020183.4         ACTGTAAACTGCAGGAGTATGTCAAATAAGGAGTTGTTTCCACCAAGTCCTTCTGAAATG
NM_001248005.1      ACTGTAAACTGCAG----------------------------------------------
                    **************                                              

HsCD00443536        GGGGAGCTAGAGGCTACCAGGCAAAACCAGAGTACTGTTGCTGTCCACAGCCATGAGCCA
NM_001248002.1      GGGGAGCTAGAGGCTACCAGGCAAAACCAGAGTACTGTTGCTGTCCACAGCCATGAGCCA
NM_001248003.1      GGGGAGCTAGAGGCTACCAGGCAAAACCAGAGTACTGTTGCTGTCCACAGCCATGAGCCA
NM_001248004.1      GGGGAGCTAGAGGCTACCAGGCAAAACCAGAGTACTGTTGCTGTCCACAGCCATGAGCCA
NM_020183.4         GGGGAGCTAGAGGCTACCAGGCAAAACCAGAGTACTGTTGCTGTCCACAGCCATGAGCCA
NM_001248005.1      ------------------------------------------------------------
                                                                                

HsCD00443536        CTCCTCAGTGATGGTGCACAGTTGGATTTCGATGCCCTATGTGACAATGATGACACAGCC
NM_001248002.1      CTCCTCAGTGATGGTGCACAGTTGGATTTCGATGCCCTATGTGACAATGATGACACAGCC
NM_001248003.1      CTCCTCAGTGATGGTGCACAGTTGGATTTCGATGCCCTATGTGACAATGATGACACAGCC
NM_001248004.1      CTCCTCAGTGATGGTGCACAGTTGGATTTCGATGCCCTATGTGACAATGATGACACAGCC
NM_020183.4         CTCCTCAGTGATGGTGCACAGTTGGATTTCGATGCCCTATGTGACAATGATGACACAGCC
NM_001248005.1      ---GAGTGTGATGGTGCACAGTTGGATTTCGATGCCCTATGTGACAATGATGACACAGCC
                        : :*****************************************************

HsCD00443536        ATGGCTGCATTTATGAATTACTTAGAAGCAGAGGGGGGCCTGGGAGACCCTGGGGACTTC
NM_001248002.1      ATGGCTGCATTTATGAATTACTTAGAAGCAGAGGGGGGCCTGGGAGACCCTGGGGACTTC
NM_001248003.1      ATGGCTGCATTTATGAATTACTTAGAAGCAGAGGGGGGCCTGGGAGACCCTGGGGACTTC
NM_001248004.1      ATGGCTGCATTTATGAATTACTTAGAAGCAGAGGGGGGCCTGGGAGACCCTGGGGACTTC
NM_020183.4         ATGGCTGCATTTATGAATTACTTAGAAGCAGAGGGGGGCCTGGGAGACCCTGGGGACTTC
NM_001248005.1      ATGGCTGCATTTATGA--------------------------------------------
                    ****************                                            

HsCD00443536        AGTGACATCCAGTGGACCCTC---
NM_001248002.1      AGTGACATCCAGTGGACCCTCTAG
NM_001248003.1      AGTGACATCCAGTGGACCCTCTAG
NM_001248004.1      AGTGACATCCAGTGGACCCTCTAG
NM_020183.4         AGTGACATCCAGTGGACCCTCTAG
NM_001248005.1      ------------------------
                                            

Pathways

Reactome : BMAL1:CLOCK,NPAS2 activates circadian gene expression
Reactome : Circadian Clock

Protein

SMART domain : HLH : helix loop helix domain
SMART domain : PAS : PAS domain
HPRD : 16507

Clone

Original Clone ID : ccsbBroad304_12315

Organism


TAX_ID : 9606
Species Specific ID: 56938

Genome

Chromosome : 12
Map Location : 12p12.2-p11.2

Reagents

Labome : BMAL2-antibody