DNASU Plasmid Repository • 480.965.2857 | Email

CD44 (Homo sapiens) in pDNR-Dual (Creator donor/master vector)

TOP

Explanation of Terms


Gene: Gene Symbol:  CD44
Gene Name:  CD44 molecule (Indian blood group)
Sequence              Map: pDNR-Dual_with_human_insert.pdf
Original Clone ID: FLH018919.01X
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pDNR-Dual               Format:  CLOSED
Source: HIP
Description: None
Comments: None
Mutation/
Discrepancy :
No / Yes
Publications: PMID: 16512675
Title: Functional proteomics approach to investigate the biological activities of cDNAs implicated in breast cancer.
Authors: HIP
HsCD00004892

Price:  Login for Pricing
AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 1086nts         Open reading frame : 1 to 1086
Reference Sequence Alignment

ATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCG
CAGATCGATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGT
CGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTG
CCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAGGTATGGG
TTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAAC
AACACAGGGGTGTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAAT
GCTTCAGCTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGAT
GGACCAATTACCATAACTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAA
TACAGAACGAATCCTGAAGACATCTACCCCAGCAACCCTACTGATGATGACGTGAGCAGC
GGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACT
GTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCT
GCTACCAGAGACCAAGACACATTCCACCCCAGTGGGGGGTCCCATACCACTCATGGATCT
GAATCAGATGGACACTCACATGGGAGTCAAGAAGGTGGAGCAAACACAACCTCTGGTCCT
ATAAGGACACCCCAAATTCCAGAATGGCTGATCATCTTGGCATCCCTCTTGGCCTTGGCT
TTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAGGTGTGGGCAGAAGAAAAAG
CTAGTGATCAACAGTGGCAATGGAGCTGTGGAGGACAGAAAGCCAAGTGGACTCAACGGA
GAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTGAACAAGGAGTCGTCAGAAACTCCA
GACCAGTTTATGACAGCTGATGAGACAAGGAACCTGCAGAATGTGGACATGAAGATTGGG
GTGTAG


Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: Sequence Verification
Reference Sequence Annotations:
End on reference sequence 1114
Start on reference sequence 29
Mutations:
None
Discrepancy:
t255c; a326c,Y109S
                                

5' Linker Sequence:
5P GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACACC(ATG-GOI)

3' Linker Sequence:
5p (goi-stop)GGAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  ampicillin
Bacterial Selection Condition:  100 ug/mL ampicillin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

         Powered by LabGenius

Vector Name: pDNR-Dual

pDNR-Dual in advanced viewed

Synonyms: None
Sequencing Primer: Forward:  M13F
Reverse:  Unknown
Description: Recombinational donor/master vector with 6xHN tag ORF, T7 and M13 primer sites; ampicillin resistance; restriction enzyme cloning (into) and recombinational cloning (from).
Comments: The position of features were detemined for the empty form of the vector, which is described in detail on the BD/Clontech website. Subcloning into the MCS was performed using the infusion reaction strategy and some restriction sites in the MCS may be lost after an insert is added.
Size (bp): 4938
Parent Vector: None
Empty Vector: None
Properties: Creator, donor (entry), loxP, multiple cloning site, recombinational cloning, with tag/fusion/marker
Author Name: BD Biosciences Clontech
Publications: None
Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
MCS MCS restriction enzyme-type multiple cloning site 45 129
bacterial origin ColE1 ColE1 (pUC-type) origin of replication 4111 4574
negative selection marker SacB SacB negative selection marker gene (sucrose sensitivity) 1057 2972
primer site M13 primer M13 primer sequencing site 4839 4855
primer site T7 primer T7 RNA Pol primer sequencing site 4865 4883
recombination site loxP site loxP recombination site 1015 1048
recombination site loxP site loxP recombination site 9 42
selectable marker CmR chloramphenicol resistance gene ORF (functional only after recombination of insert into vector with promoter) 986 327
selectable marker AmpR ampicillin resistance gene 3103 3963
splice donor site SD site splice donor site 132 136
tag HN 6xHN epitope tag 141 176

 

  • Gene
  • Pathways
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : CD44
Symbol Nomenclature : CD44
SYNONYM : CDW44; CSPG8; ECMR-III; HCELL; HUTCH-I; IN; LHR; MC56; MDU2; MDU3; MIC4; Pgp1
Designation : CD44 antigen|GP90 lymphocyte homing/adhesion receptor|Hermes antigen|cell surface glycoprotein CD44|chondroitin sulfate proteoglycan 8|epican|extracellular matrix receptor III|hematopoietic cell E- and L-selectin ligand|heparan sulfate proteoglycan|homing function and Indian blood group system|hyaluronate receptor|phagocytic glycoprotein 1
Full Nomenclature : CD44 molecule (Indian blood group)
GENEID : 960
Locus Tag : AL133330.1
GI : 61362988
GenBank Accession : AY890373
HGNC : 1681
MIM : 107269
Vega : OTTHUMG00000044388
Target GenBank: M59040

 

Reference Sequence Alignment

  

HsCD00004892        ATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCG
NM_001202555.1      ATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCG
NM_001001390.1      ATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCG
NM_001001389.1      ATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCG
NM_001202556.1      ATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCG
NM_000610.3         ATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCG
NM_001001391.1      ATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCG
                    ************************************************************

HsCD00004892        CAGATCGATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGT
NM_001202555.1      CAGATCGATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGT
NM_001001390.1      CAGATCGATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGT
NM_001001389.1      CAGATCGATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGT
NM_001202556.1      CAGATCGATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGT
NM_000610.3         CAGATCGATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGT
NM_001001391.1      CAGATCGATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGT
                    ************************************************************

HsCD00004892        CGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTG
NM_001202555.1      CGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTG
NM_001001390.1      CGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTG
NM_001001389.1      CGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTG
NM_001202556.1      CGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTG
NM_000610.3         CGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTG
NM_001001391.1      CGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTG
                    ************************************************************

HsCD00004892        CCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAGGTATGGG
NM_001202555.1      CCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAGGTATGGG
NM_001001390.1      CCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAGGTATGGG
NM_001001389.1      CCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAGGTATGGG
NM_001202556.1      CCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAGGTATGGG
NM_000610.3         CCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAGGTATGGG
NM_001001391.1      CCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAGGTATGGG
                    ************************************************************

HsCD00004892        TTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAAC
NM_001202555.1      TTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAAC
NM_001001390.1      TTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAAC
NM_001001389.1      TTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAAC
NM_001202556.1      TTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAAC
NM_000610.3         TTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAAC
NM_001001391.1      TTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAAC
                    ************************************************************

HsCD00004892        AACACAGGGGTGTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAAT
NM_001202555.1      AACACAGGGGTGTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAAT
NM_001001390.1      AACACAGGGGTGTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAAT
NM_001001389.1      AACACAGGGGTGTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAAT
NM_001202556.1      AACACAGGGGTGTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAAT
NM_000610.3         AACACAGGGGTGTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAAT
NM_001001391.1      AACACAGGGGTGTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAAT
                    ************************************************************

HsCD00004892        GCTTCAGCTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGAT
NM_001202555.1      GCTTCAGCTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGAT
NM_001001390.1      GCTTCAGCTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGAT
NM_001001389.1      GCTTCAGCTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGAT
NM_001202556.1      GCTTCAGCTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGAT
NM_000610.3         GCTTCAGCTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGAT
NM_001001391.1      GCTTCAGCTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGAT
                    ************************************************************

HsCD00004892        GGACCAATTACCATAACTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAA
NM_001202555.1      GGACCAATTACCATAACTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAA
NM_001001390.1      GGACCAATTACCATAACTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAA
NM_001001389.1      GGACCAATTACCATAACTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAA
NM_001202556.1      GGACCAATTACCATAACTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAA
NM_000610.3         GGACCAATTACCATAACTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAA
NM_001001391.1      GGACCAATTACCATAACTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAA
                    ************************************************************

HsCD00004892        TACAGAACGAATCCTGAAGACATCTACCCCAGCAACCCTACTGATGATGACGTGAGCAGC
NM_001202555.1      TACAGAACGAATCCTGAAGACATCTACCCCAGCAACCCTACTGATGATGACGTGAGCAGC
NM_001001390.1      TACAGAACGAATCCTGAAGACATCTACCCCAGCAACCCTACTGATGATGACGTGAGCAGC
NM_001001389.1      TACAGAACGAATCCTGAAGACATCTACCCCAGCAACCCTACTGATGATGACGTGAGCAGC
NM_001202556.1      TACAGAACGAATCCTGAAGACATCTACCCCAGCAACCCTACTGATGATGACGTGAGCAGC
NM_000610.3         TACAGAACGAATCCTGAAGACATCTACCCCAGCAACCCTACTGATGATGACGTGAGCAGC
NM_001001391.1      TACAGAACGAATCCTGAAGACATCTACCCCAGCAACCCTACTGATGATGACGTGAGCAGC
                    ************************************************************

HsCD00004892        GGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACT
NM_001202555.1      GGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACT
NM_001001390.1      GGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACT
NM_001001389.1      GGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACT
NM_001202556.1      GGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACT
NM_000610.3         GGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACT
NM_001001391.1      GGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACT
                    ************************************************************

HsCD00004892        GTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCT
NM_001202555.1      GTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCT
NM_001001390.1      GTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCT
NM_001001389.1      GTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCT
NM_001202556.1      GTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCT
NM_000610.3         GTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCT
NM_001001391.1      GTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCT
                    ************************************************************

HsCD00004892        GCTACCAG----------------------------------------------------
NM_001202555.1      GCTACCAATAG-------------------------------------------------
NM_001001390.1      GC---TAC---CAATATGGACTCCAG----------------------------------
NM_001001389.1      GC---TAC---CAGTACG------------------------------------------
NM_001202556.1      ------------GCTAC-CAGA--------------------------------------
NM_000610.3         ------------GCTAC-CACTTTGATGAGCACTAGTGCTACAGCAACTGAGACAGCAAC
NM_001001391.1      ------------GCTAC-CAGAGA------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      ------------------------------------------------------------
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         CAAGAGGCAAGAAACCTGGGATTGGTTTTCATGGTTGTTTCTACCATCAGAGTCAAAGAA
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      ----------------------------------TCTTCAAATACCATCTCAGCAGGCTG
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         TCATCTTCACACAACAACACAAATGGCTGGTACGTCTTCAAATACCATCTCAGCAGGCTG
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      GGAGCCAAATGAAGAAAATGAAGATGAAAGAGACAGACACCTCAGTTTTTCTGGATCAGG
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         GGAGCCAAATGAAGAAAATGAAGATGAAAGAGACAGACACCTCAGTTTTTCTGGATCAGG
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      CATTGATGATGATGAAGATTTTATCTCCAGCACCATTTCAACCACACCACGGGCTTTTGA
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         CATTGATGATGATGAAGATTTTATCTCCAGCACCATTTCAACCACACCACGGGCTTTTGA
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      CCACACAAAACAGAACCAGGACTGGACCCAGTGGAACCCAAGCCATTCAAATCCGGAAGT
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         CCACACAAAACAGAACCAGGACTGGACCCAGTGGAACCCAAGCCATTCAAATCCGGAAGT
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      GCTACTTCAGACAACCACAAGGATGACTGATGTAGACAGAAATGGCACCACTGCTTATGA
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         GCTACTTCAGACAACCACAAGGATGACTGATGTAGACAGAAATGGCACCACTGCTTATGA
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      AGGAAACTGGAACCCAGAAGCACACCCTCCCCTCATTCACCATGAGCATCATGAGGAAGA
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         AGGAAACTGGAACCCAGAAGCACACCCTCCCCTCATTCACCATGAGCATCATGAGGAAGA
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      AGAGACCCCACATTCTACAAGCACAATCCAGGCAACTCCTAGTAGTACAACGGAAGAAAC
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         AGAGACCCCACATTCTACAAGCACAATCCAGGCAACTCCTAGTAGTACAACGGAAGAAAC
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      AGCTACCCAGAAGGAACAGTGGTTTGGCAACAGATGGCATGAGGGATATCGCCAAACACC
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         AGCTACCCAGAAGGAACAGTGGTTTGGCAACAGATGGCATGAGGGATATCGCCAAACACC
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      CAAAGAAGACTCCCATTCGACAACAGGGACAGCTGCAGCCTCAGCTCATACCAGCCATCC
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         CAAAGAAGACTCCCATTCGACAACAGGGACAGCTGCAGCCTCAGCTCATACCAGCCATCC
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      AATGCAAGGAAGGACAACACCAAGCCCAGAGGACAGTTCCTGGACTGATTTCTTCAACCC
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         AATGCAAGGAAGGACAACACCAAGCCCAGAGGACAGTTCCTGGACTGATTTCTTCAACCC
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ------------------------------------------------------------
NM_001001389.1      AATCTCACACCCCATGGGACGAGGTCATCAAGCAGGAAGAAGGATGGATATGGACTCCAG
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         AATCTCACACCCCATGGGACGAGGTCATCAAGCAGGAAGAAGGATGGATATGGACTCCAG
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      TCATAGTATAACGCTTCAGCCTACTGCAAATCCAAACACAGGTTTGGTGGAAGATTTGGA
NM_001001389.1      TCATAGTATAACGCTTCAGCCTACTGCAAATCCAAACACAGGTTTGGTGGAAGATTTGGA
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         TCATAGTATAACGCTTCAGCCTACTGCAAATCCAAACACAGGTTTGGTGGAAGATTTGGA
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      CAGGACAGGACCTCTTTCAATGACAACGCAGCAGAGTAATTCTCAGAGCTTCTCTACATC
NM_001001389.1      CAGGACAGGACCTCTTTCAATGACAACGCAGCAGAGTAATTCTCAGAGCTTCTCTACATC
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         CAGGACAGGACCTCTTTCAATGACAACGCAGCAGAGTAATTCTCAGAGCTTCTCTACATC
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ------------------------------------------------------------
NM_001001390.1      ACATGAAGGCTTGGAAGAAGATAAAGACCATCCAACAACTTCTACTCTGACATCAAGCAA
NM_001001389.1      ACATGAAGGCTTGGAAGAAGATAAAGACCATCCAACAACTTCTACTCTGACATCAAGCAA
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         ACATGAAGGCTTGGAAGAAGATAAAGACCATCCAACAACTTCTACTCTGACATCAAGCAA
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ---GAATGATGTCACAGGTGGAAGAAGAGACCCAAATCATTCTGAAGGCTCAACTACTTT
NM_001001390.1      TAGGAATGATGTCACAGGTGGAAGAAGAGACCCAAATCATTCTGAAGGCTCAACTACTTT
NM_001001389.1      TAGGAATGATGTCACAGGTGGAAGAAGAGACCCAAATCATTCTGAAGGCTCAACTACTTT
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         TAGGAATGATGTCACAGGTGGAAGAAGAGACCCAAATCATTCTGAAGGCTCAACTACTTT
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      ACTGGAAGGTTATACCTCTCATTACCCACACACGAAGGAAAGCAGGACCTTCATCCCAGT
NM_001001390.1      ACTGGAAGGTTATACCTCTCATTACCCACACACGAAGGAAAGCAGGACCTTCATCCCAGT
NM_001001389.1      ACTGGAAGGTTATACCTCTCATTACCCACACACGAAGGAAAGCAGGACCTTCATCCCAGT
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         ACTGGAAGGTTATACCTCTCATTACCCACACACGAAGGAAAGCAGGACCTTCATCCCAGT
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------------------------------------------
NM_001202555.1      GACCTCAGCTAAGACTGGGTCCTTTGGAGTTACTGCAGTTACTGTTGGAGATTCCAACTC
NM_001001390.1      GACCTCAGCTAAGACTGGGTCCTTTGGAGTTACTGCAGTTACTGTTGGAGATTCCAACTC
NM_001001389.1      GACCTCAGCTAAGACTGGGTCCTTTGGAGTTACTGCAGTTACTGTTGGAGATTCCAACTC
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         GACCTCAGCTAAGACTGGGTCCTTTGGAGTTACTGCAGTTACTGTTGGAGATTCCAACTC
NM_001001391.1      ------------------------------------------------------------
                                                                                

HsCD00004892        ------------------------AGACCAAGACACATTCCACCCCAGTGGGGGGTCCCA
NM_001202555.1      TAATGTCAATCGTTCCTTATCAGGAGACCAAGACACATTCCACCCCAGTGGGGGGTCCCA
NM_001001390.1      TAATGTCAATCGTTCCTTATCAGGAGACCAAGACACATTCCACCCCAGTGGGGGGTCCCA
NM_001001389.1      TAATGTCAATCGTTCCTTATCAGGAGACCAAGACACATTCCACCCCAGTGGGGGGTCCCA
NM_001202556.1      ------------------------------------------------------------
NM_000610.3         TAATGTCAATCGTTCCTTATCAGGAGACCAAGACACATTCCACCCCAGTGGGGGGTCCCA
NM_001001391.1      ---------------------------CCAAGACACATTCCACCCCAGTGGGGGGTCCCA
                                                                                

HsCD00004892        TACCACTCATGGATCTGAATCAGATGGACACTCACATGGGAGTCAAGAAGGTGGAGCAAA
NM_001202555.1      TACCACTCATGGATCTGAATCAGATGGACACTCACATGGGAGTCAAGAAGGTGGAGCAAA
NM_001001390.1      TACCACTCATGGATCTGAATCAGATGGACACTCACATGGGAGTCAAGAAGGTGGAGCAAA
NM_001001389.1      TACCACTCATGGATCTGAATCAGATGGACACTCACATGGGAGTCAAGAAGGTGGAGCAAA
NM_001202556.1      ----------------------------CACTCACATGGGAGTCAAGAAGGTGGAGCAAA
NM_000610.3         TACCACTCATGGATCTGAATCAGATGGACACTCACATGGGAGTCAAGAAGGTGGAGCAAA
NM_001001391.1      TACCACTCATGGATCTGAATCAGATGGACACTCACATGGGAGTCAAGAAGGTGGAGCAAA
                                                ********************************

HsCD00004892        CACAACCTCTGGTCCTATAAGGACACCCCAAATTCCAGAATGGCTGATCATCTTGGCATC
NM_001202555.1      CACAACCTCTGGTCCTATAAGGACACCCCAAATTCCAGAATGGCTGATCATCTTGGCATC
NM_001001390.1      CACAACCTCTGGTCCTATAAGGACACCCCAAATTCCAGAATGGCTGATCATCTTGGCATC
NM_001001389.1      CACAACCTCTGGTCCTATAAGGACACCCCAAATTCCAGAATGGCTGATCATCTTGGCATC
NM_001202556.1      CACAACCTCTGGTCCTATAAGGACACCCCAAATTCCAGAATGGCTGATCATCTTGGCATC
NM_000610.3         CACAACCTCTGGTCCTATAAGGACACCCCAAATTCCAGAATGGCTGATCATCTTGGCATC
NM_001001391.1      CACAACCTCTGGTCCTATAAGGACACCCCAAATTCCAGAATGGCTGATCATCTTGGCATC
                    ************************************************************

HsCD00004892        CCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAGGTG
NM_001202555.1      CCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAGGTG
NM_001001390.1      CCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAGGTG
NM_001001389.1      CCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAGGTG
NM_001202556.1      CCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAGGTG
NM_000610.3         CCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAGGTG
NM_001001391.1      CCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAGGTG
                    ************************************************************

HsCD00004892        TGGGCAGAAGAAAAAGCTAGTGATCAACAGTGGCAATGGAGCTGTGGAGGACAGAAAGCC
NM_001202555.1      TGGGCAGAAGAAAAAGCTAGTGATCAACAGTGGCAATGGAGCTGTGGAGGACAGAAAGCC
NM_001001390.1      TGGGCAGAAGAAAAAGCTAGTGATCAACAGTGGCAATGGAGCTGTGGAGGACAGAAAGCC
NM_001001389.1      TGGGCAGAAGAAAAAGCTAGTGATCAACAGTGGCAATGGAGCTGTGGAGGACAGAAAGCC
NM_001202556.1      TGGGCAGAAGAAAAAGCTAGTGATCAACAGTGGCAATGGAGCTGTGGAGGACAGAAAGCC
NM_000610.3         TGGGCAGAAGAAAAAGCTAGTGATCAACAGTGGCAATGGAGCTGTGGAGGACAGAAAGCC
NM_001001391.1      TGGGCAGAAGAAAAAGCTAGTGATCAACAGTGGCAATGGAGCTGTGGAGGACAGAAAGCC
                    ************************************************************

HsCD00004892        AAGTGGACTCAACGGAGAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTGAACAAGGA
NM_001202555.1      AAGTGGACTCAACGGAGAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTGAACAAGGA
NM_001001390.1      AAGTGGACTCAACGGAGAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTGAACAAGGA
NM_001001389.1      AAGTGGACTCAACGGAGAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTGAACAAGGA
NM_001202556.1      AAGTGGACTCAACGGAGAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTGAACAAGGA
NM_000610.3         AAGTGGACTCAACGGAGAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTGAACAAGGA
NM_001001391.1      AAGTGGACTCAACGGAGAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTGAACAAGGA
                    ************************************************************

HsCD00004892        GTCGTCAGAAACTCCAGACCAGTTTATGACAGCTGATGAGACAAGGAACCTGCAGAATGT
NM_001202555.1      GTCGTCAGAAACTCCAGACCAGTTTATGACAGCTGATGAGACAAGGAACCTGCAGAATGT
NM_001001390.1      GTCGTCAGAAACTCCAGACCAGTTTATGACAGCTGATGAGACAAGGAACCTGCAGAATGT
NM_001001389.1      GTCGTCAGAAACTCCAGACCAGTTTATGACAGCTGATGAGACAAGGAACCTGCAGAATGT
NM_001202556.1      GTCGTCAGAAACTCCAGACCAGTTTATGACAGCTGATGAGACAAGGAACCTGCAGAATGT
NM_000610.3         GTCGTCAGAAACTCCAGACCAGTTTATGACAGCTGATGAGACAAGGAACCTGCAGAATGT
NM_001001391.1      GTCGTCAGAAACTCCAGACCAGTTTATGACAGCTGATGAGACAAGGAACCTGCAGAATGT
                    ************************************************************

HsCD00004892        GGACATGAAGATTGGGGTGTAG
NM_001202555.1      GGACATGAAGATTGGGGTGTAA
NM_001001390.1      GGACATGAAGATTGGGGTGTAA
NM_001001389.1      GGACATGAAGATTGGGGTGTAA
NM_001202556.1      GGACATGAAGATTGGGGTGTAA
NM_000610.3         GGACATGAAGATTGGGGTGTAA
NM_001001391.1      GGACATGAAGATTGGGGTGTAA
                    *********************.

Pathways

NCI : Osteopontin-mediated events
NCI : a4b7 Integrin signaling
Panther : Alzheimer disease-presenilin pathway
Reactome : Cell surface interactions at the vascular wall
Reactome : Cytokine Signaling in Immune system
Reactome : Degradation of the extracellular matrix
Reactome : Disease
Reactome : Extracellular matrix organization
Reactome : Gene Expression
Reactome : Glycogen storage diseases
Reactome : Glycosaminoglycan metabolism
Reactome : Hemostasis
Reactome : Hyaluronan metabolism
Reactome : Hyaluronan uptake and degradation
Reactome : Immune System
Reactome : Insulin-like Growth Factor-2 mRNA Binding Proteins (IGF2BPs/IMPs/VICKZs) bind RNA
Reactome : Integrin cell surface interactions
Reactome : Interferon Signaling
Reactome : Interferon gamma signaling
Reactome : MPS I - Hurler syndrome
Reactome : MPS II - Hunter syndrome
Reactome : MPS IIIA - Sanfilippo syndrome A
Reactome : MPS IIIB - Sanfilippo syndrome B
Reactome : MPS IIIC - Sanfilippo syndrome C
Reactome : MPS IIID - Sanfilippo syndrome D
Reactome : MPS IV - Morquio syndrome A
Reactome : MPS IV - Morquio syndrome B
Reactome : MPS IX - Natowicz syndrome
Reactome : MPS VI - Maroteaux-Lamy syndrome
Reactome : MPS VII - Sly syndrome
Reactome : Metabolism
Reactome : Metabolism of carbohydrates
Reactome : Mucopolysaccharidoses
Reactome : Myoclonic epilepsy of Lafora
WikiPathway : Senescence and Autophagy
WikiPathway : Wnt Signaling Pathway and Pluripotency

Protein

SMART domain : LINK : Link (Hyaluronan-binding)
UniProt : B6EAT9
UniProt : P16070
UniProt : O95370
HPRD : 00115

Clone

Cloning Information : 18919
HIP Master Clone ID : 33118
Original Clone ID : FLH018919.01X

Organism


TAX_ID : 9606
Species Specific ID: 960

Genome

Chromosome : 11
Map Location : 11p13
Ensembl : ENSG00000026508

Reagents

Labome : CD44-antibody