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EDDM3B (Homo sapiens) in pENTR223 (Gateway donor/master vector)

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Explanation of Terms


Gene: Gene Symbol:  EDDM3B
Gene Name:  epididymal protein 3B
Sequence             
Original Clone ID: ccsbBroadEn_08842
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pENTR223               Format:  FUSION
Source: The ORFeome Collaboration
Description: Original GenBank Accession: BC128030.1
Comments: None
Mutation/
Discrepancy :
No / No
Publications: None
Authors: The ORFeome Collaboration
Dana-Farber Cancer Institute
Broad Institute of Harvard and Massachusetts Institute of Technology (MIT)
David E Hill
David E Root
Harvard Medical School
HsCD00505273

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 442nts         Open reading frame : 1 to 442
Reference Sequence Alignment

ATGGCATCGTCTGTAAAGATCTGGGGCACACTCTTGGCCCTACTTTGCATCCTATGCACA
CTGCTTGTACAGAGCAAAGAAGTTTCTTGGAGAGAATTCATGAAACAGCACTACTTAAGT
CCAAGTCGAGAATTCAGAGAGTACAAATGTGATGTCCTCATGAGAGAAAATGAAGCTCTG
AAAGACAAGAGCTCTCACATGTTTATCTATATCTCATGGTACAAAATCGAGCATATATGC
ACTAGTGACAACTGGATGGATCGCTTCCGAAATGCATATGTATGGGTCCAGAATCCTCTC
AAAGTACTCAAGTGTCACCAGGAGAATTCCAAAAATAGCTACACAGAGAGCAGGAGCTTC
AACTACATTGAATTCCATTGTAGCATGGACGGGTATGTTGATAGCATAGAAGACCTAAAG
ATGGTAGAACCTATCGGCAAC


Coding Sequence Details
Insert Sequence Verified?: N Verification Method: Verified by the ORFeome collaboration
Mutations:
None
Discrepancy:
None
5' Linker Sequence: None
3' Linker Sequence: None

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  spectinomycin
Bacterial Selection Condition:  100 ug/mL spectinomycin
Growth Condition:  Growth at 37 degrees C in LB supplemented with 100 ug/mL spectinomycin.
Comments:  None
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pENTR223

pENTR223 in advanced viewed

Synonyms: pDONR223, pENTR223-XnCDSYn
Sequencing Primer: Forward:  M13F
Reverse:  M13R
Description: Gateway type (lambda att-type) recombinational cloning entry (master) vector; spectinomycin resistance; recombinational cloning.
Comments: Additional information about this vector is available from the commercial website and at the ORFeome website http://orfeomecollaboration.org/vectors.php; also see supplemental figure 1 of the paper PubMed ID 15489335.
Size (bp): 2815
Parent Vector: None
Empty Vector: None
Properties: Gateway, donor (entry), recombinational cloning
Author Name: Mark Vidal
Publications: PMID: 15489335
Title: Human ORFeome Version 1.1: A Platform for Reverse Proteomics

Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
bacterial origin ori bacterial origin of replication 2220 2753
gene fragment pas 5p stem of pBR primose assembly site 63 73
gene fragment pas prime 3p stem of pBR pas(L) 105 116
recombination site attL1 attL1 recombination site 570 665
recombination site attL2 attL2 recombination site 793 696
selectable marker SpnR spectinomycin resistance gene 1062 2072
trxn termination sequence T1-T2 rrnBT1 and T2 terminators 510 224

 

  • Gene
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : EDDM3B
Symbol Nomenclature : EDDM3B
SYNONYM : EP3B; FAM12B; HE3-BETA; HE3B; RAM2
Designation : epididymal secretory protein E3 beta|epididymal secretory protein E3-beta|family with sequence similarity 12, member B (epididymal)|human epididymis-specific 3 beta|human epididymis-specific protein 3-beta|ribonuclease A M2
Full Nomenclature : epididymal protein 3B
GENEID : 64184
Locus Tag : UNQ6412/PRO21187
HGNC : 19223
MIM : 611582
Vega : OTTHUMG00000029583
Target GenBank: None

 

Reference Sequence Alignment

  

HsCD00505273      ATGGCATCGTCTGTAAAGATCTGGGGCACACTCTTGGCCCTACTTTGCATCCTATGCACA
NM_022360.4       ATGGCATCGTCTCTAAAGATCTGGGGCACACTCTTGGCCCTACTTTGCATCCTATGCACA
                  ************ ***********************************************

HsCD00505273      CTGCTTGTACAGAGCAAAGAAGTTTCTTGGAGAGAATTCATGAAACAGCACTACTTAAGT
NM_022360.4       CTGCTTGTACAGAGCAAAGAAGTTTCTTGGAGAGAATTCATGAAACAGCACTACTTAAGT
                  ************************************************************

HsCD00505273      CCAAGTCGAGAATTCAGAGAGTACAAATGTGATGTCCTCATGAGAGAAAATGAAGCTCTG
NM_022360.4       CCAAGTCGAGAATTCAGAGAGTACAAATGTGATGTCCTCATGAGAGAAAATGAAGCTCTG
                  ************************************************************

HsCD00505273      AAAGACAAGAGCTCTCACATGTTTATCTATATCTCATGGTACAAAATCGAGCATATATGC
NM_022360.4       AAAGACAAGAGCTCTCACATGTTTATCTATATCTCATGGTACAAAATCGAGCATATATGC
                  ************************************************************

HsCD00505273      ACTAGTGACAACTGGATGGATCGCTTCCGAAATGCATATGTATGGGTCCAGAATCCTCTC
NM_022360.4       ACTAGTGACAACTGGATGGATCGCTTCCGAAATGCATATGTATGGGTCCAGAATCCTCTC
                  ************************************************************

HsCD00505273      AAAGTACTCAAGTGTCACCAGGAGAATTCCAAAAATAGCTACACAGAGAGCAGGAGCTTC
NM_022360.4       AAAGTACTCAAGTGTCACCAGGAGAATTCCAAAAATAGCTACACAGAGAGCAGGAGCTTC
                  ************************************************************

HsCD00505273      AACTACATTGAATTCCATTGTAGCATGGACGGGTATGTTGATAGCATAGAAGACCTAAAG
NM_022360.4       AACTACATTGAATTCCATTGTAGCATGGACGGGTATGTTGATAGCATAGAAGACCTAAAG
                  ************************************************************

HsCD00505273      ATGGTAGAACCTATCGGCAAC---
NM_022360.4       ATGGTAGAACCTATCGGCAACTAG
                  *********************   

Protein

SMART domain : RNAse_Pc : Pancreatic ribonuclease
HPRD : 13290

Clone

Cloning Information : 667491
Original Clone ID : ccsbBroadEn_08842

Organism


TAX_ID : 9606
Species Specific ID: 64184

Genome

Chromosome : 14
Map Location : 14q11.2
Ensembl : ENSG00000181552

Reagents

Labome : EDDM3B-antibody