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CNOT4 (Homo sapiens) in pENTR223 (Gateway donor/master vector)

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Explanation of Terms


Gene: Gene Symbol:  CNOT4
Gene Name:  CCR4-NOT transcription complex, subunit 4
Sequence             
Original Clone ID: ccsbBroadEn_06649
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pENTR223               Format:  FUSION
Source: The ORFeome Collaboration
Description: Original GenBank Accession: BC035590.1
Comments: None
Mutation/
Discrepancy :
No / No
Publications: None
Authors: The ORFeome Collaboration
Dana-Farber Cancer Institute
Broad Institute of Harvard and Massachusetts Institute of Technology (MIT)
David E Hill
David E Root
Harvard Medical School
HsCD00515947

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 1717nts         Open reading frame : 1 to 1717
Reference Sequence Alignment

ATGTCTCGCAGTCCTGATGCGAAGGAAGACCCTGTGGAGTGCCCTCTTTGCATGGAGCCC
TTGGAGATAGATGATATCAACTTTTTCCCTTGCACCTGTGGCTACCAGATTTGCCGATTT
TGTTGGCATCGAATTCGCACTGATGAAAATGGGCTTTGTCCTGCATGTAGAAAGCCATAT
CCAGAAGACCCAGCAGTTTATAAACCACTCTCCCAGGAAGAGCTGCAAAGGATAAAGAAT
GAGAAAAAACAGAAACAAAATGAGAGAAAACAGAAAATATCAGAAAATCGCAAACATTTG
GCTAGTGTACGTGTCGTACAAAAAAACCTCGTCTTTGTTGTAGGTTTATCTCAGCGCCTA
GCAGACCCAGAGGTTTTAAAACGACCAGAATATTTTGGGAAGTTTGGTAAAATACATAAA
GTTGTCATCAATAATAGCACATCATATGCAGGCTCACAGGGTCCAAGTGCCAGTGCTTAT
GTAACCTATATCCGGTCAGAAGACGCTCTCAGAGCCATACAGTGTGTCAACAATGTGGTA
GTAGATGGCAGAACACTTAAGGCATCTCTAGGTACAACAAAATACTGCAGTTACTTCTTA
AAGAATATGCAGTGTCCAAAACCTGACTGCATGTATCTTCATGAATTGGGGGATGAGGCG
GCCAGCTTCACAAAAGAGGAAATGCAGGCGGGTAAACACCAAGAATATGAACAGAAGCTA
CTTCAAGAATTATATAAATTAAATCCCAATTTTCTTCAGCTATCTACGGGTTCAGTTGAT
AAAAATAAGAACAAAGTGACACCACTGCAGAGCCCCATTGACAAACCTTCAGATTCTCTC
AGTATAGGGAACGGTGATAATTCCCAGCAGATATCTAACAGTGATACGCCTTCACCACCA
CCTGGTTTGTCAAAATCCAATCCAGTCATCCCCATCAGTTCATCCAATCACAGTGCACGG
TCCCCTTTTGAAGGGGCAGTAACAGAGTCACAGTCGTTATTCTCAGACATTTTTCGCCAT
CCCAACCCTATCCCAAGTGGGCTTCCTCCTTTCCCCAGCTCCCCACAGACATCCAGTGAC
TGGCCTACAGCACCAGAACCACAGAGCCTCTTCACATCAGAAACAATCCCAGTATCATCC
TCTACAGACTGGCAAGCAGCTTTTGGCTTTGGTTCTTCTAAACAACCAGAGGATGACTTG
GGTTTTGATCCCTTCGATGTCACTCGAAAAGCCTTAGCAGACCTGATTGAGAAGGAACTG
TCCGTTCAAGACCAACCTTCCCTTTCGCCCACATCTCTTCAGAACTCCTCTTCACACACT
ACAACCGCCAAAGGTCCAGGCTCTGGATTCCTGCATCCTGCTGCAGCTACAAATGCCAAT
TCTCTCAATAGTACCTTTTCAGTCTTGCCCCAGAGGTTCCCTCAATTTCAGCAGCACCGA
GCGGTTTATAATTCATTCAGTTTTCCAGGCCAGGCAGCCCGCTATCCTTGGATGGCCTTT
CCACGCAATAGCATCATGCACTTGAACCACACAGCAAACCCCACCTCAAATAGTAATTTC
TTGGACTTGAATCTCCCGCCACAGCACAACACAGGTCTGGGAGGGATCCCTGTAGCAGGG
GAAGAAGAGGTGAAGGTTTCGACCATGCCACTGTCAACCTCTTCCCATTCATTACAACAA
GGACAGCAGCCTACAAGTCTCCACACTACTGTGGCC


Coding Sequence Details
Insert Sequence Verified?: N Verification Method: Verified by the ORFeome collaboration
Mutations:
None
Discrepancy:
None
5' Linker Sequence: None
3' Linker Sequence: None

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  spectinomycin
Bacterial Selection Condition:  100 ug/mL spectinomycin
Growth Condition:  Growth at 37 degrees C in LB supplemented with 100 ug/mL spectinomycin.
Comments:  None
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

         Powered by LabGenius

Vector Name: pENTR223

pENTR223 in advanced viewed

Synonyms: pDONR223, pENTR223-XnCDSYn
Sequencing Primer: Forward:  M13F
Reverse:  M13R
Description: Gateway type (lambda att-type) recombinational cloning entry (master) vector; spectinomycin resistance; recombinational cloning.
Comments: Additional information about this vector is available from the commercial website and at the ORFeome website http://orfeomecollaboration.org/vectors.php; also see supplemental figure 1 of the paper PubMed ID 15489335.
Size (bp): 2815
Parent Vector: None
Empty Vector: None
Properties: Gateway, donor (entry), recombinational cloning
Author Name: Mark Vidal
Publications: PMID: 15489335
Title: Human ORFeome Version 1.1: A Platform for Reverse Proteomics

Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
bacterial origin ori bacterial origin of replication 2220 2753
gene fragment pas 5p stem of pBR primose assembly site 63 73
gene fragment pas prime 3p stem of pBR pas(L) 105 116
recombination site attL1 attL1 recombination site 570 665
recombination site attL2 attL2 recombination site 793 696
selectable marker SpnR spectinomycin resistance gene 1062 2072
trxn termination sequence T1-T2 rrnBT1 and T2 terminators 510 224

 

  • Gene
  • Pathways
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : CNOT4
Symbol Nomenclature : CNOT4
SYNONYM : CLONE243; NOT4; NOT4H
Designation : CCR4-NOT transcription complex subunit 4|CCR4-associated factor 4|E3 ubiquitin-protein ligase CNOT4|NOT4 (negative regulator of transcription 4, yeast) homolog|potential transcriptional repressor NOT4Hp
Full Nomenclature : CCR4-NOT transcription complex, subunit 4
GENEID : 4850
HGNC : 7880
MIM : 604911
Vega : OTTHUMG00000155568
Target GenBank: None

 

Reference Sequence Alignment

  

HsCD00515947        ATGTCTCGCAGTCCTGATGCGAAGGAAGACCCTGTGGAGTGCCCTCTTTGCATGGAGCCC
NM_001190849.1      ATGTCTCGCAGTCCTGATGCGAAGGAAGACCCTGTGGAGTGCCCTCTTTGCATGGAGCCC
NM_001190850.1      ATGTCTCGCAGTCCTGATGCGAAGGAAGACCCTGTGGAGTGCCCTCTTTGCATGGAGCCC
NM_001190847.1      ATGTCTCGCAGTCCTGATGCGAAGGAAGACCCTGTGGAGTGCCCTCTTTGCATGGAGCCC
NM_001008225.2      ATGTCTCGCAGTCCTGATGCGAAGGAAGACCCTGTGGAGTGCCCTCTTTGCATGGAGCCC
NM_013316.3         ATGTCTCGCAGTCCTGATGCGAAGGAAGACCCTGTGGAGTGCCCTCTTTGCATGGAGCCC
NM_001190848.1      ATGTCTCGCAGTCCTGATGCGAAGGAAGACCCTGTGGAGTGCCCTCTTTGCATGGAGCCC
                    ************************************************************

HsCD00515947        TTGGAGATAGATGATATCAACTTTTTCCCTTGCACCTGTGGCTACCAGATTTGCCGATTT
NM_001190849.1      TTGGAGATAGATGATATCAACTTTTTCCCTTGCACCTGTGGCTACCAGATTTGCCGATTT
NM_001190850.1      TTGGAGATAGATGATATCAACTTTTTCCCTTGCACCTGTGGCTACCAGATTTGCCGATTT
NM_001190847.1      TTGGAGATAGATGATATCAACTTTTTCCCTTGCACCTGTGGCTACCAGATTTGCCGATTT
NM_001008225.2      TTGGAGATAGATGATATCAACTTTTTCCCTTGCACCTGTGGCTACCAGATTTGCCGATTT
NM_013316.3         TTGGAGATAGATGATATCAACTTTTTCCCTTGCACCTGTGGCTACCAGATTTGCCGATTT
NM_001190848.1      TTGGAGATAGATGATATCAACTTTTTCCCTTGCACCTGTGGCTACCAGATTTGCCGATTT
                    ************************************************************

HsCD00515947        TGTTGGCATCGAATTCGCACTGATGAAAATGGGCTTTGTCCTGCATGTAGAAAGCCATAT
NM_001190849.1      TGTTGGCATCGAATTCGCACTGATGAAAATGGGCTTTGTCCTGCATGTAGAAAGCCATAT
NM_001190850.1      TGTTGGCATCGAATTCGCACTGATGAAAATGGGCTTTGTCCTGCATGTAGAAAGCCATAT
NM_001190847.1      TGTTGGCATCGAATTCGCACTGATGAAAATGGGCTTTGTCCTGCATGTAGAAAGCCATAT
NM_001008225.2      TGTTGGCATCGAATTCGCACTGATGAAAATGGGCTTTGTCCTGCATGTAGAAAGCCATAT
NM_013316.3         TGTTGGCATCGAATTCGCACTGATGAAAATGGGCTTTGTCCTGCATGTAGAAAGCCATAT
NM_001190848.1      TGTTGGCATCGAATTCGCACTGATGAAAATGGGCTTTGTCCTGCATGTAGAAAGCCATAT
                    ************************************************************

HsCD00515947        CCAGAAGACCCAGCAGTTTATAAACCACTCTCCCAGGAAGAGCTGCAAAGGATAAAGAAT
NM_001190849.1      CCAGAAGACCCAGCAGTTTATAAACCACTCTCCCAGGAAGAGCTGCAAAGGATAAAGAAT
NM_001190850.1      CCAGAAGACCCAGCAGTTTATAAACCACTCTCCCAGGAAGAGCTGCAAAGGATAAAGAAT
NM_001190847.1      CCAGAAGACCCAGCAGTTTATAAACCACTCTCCCAGGAAGAGCTGCAAAGGATAAAGAAT
NM_001008225.2      CCAGAAGACCCAGCAGTTTATAAACCACTCTCCCAGGAAGAGCTGCAAAGGATAAAGAAT
NM_013316.3         CCAGAAGACCCAGCAGTTTATAAACCACTCTCCCAGGAAGAGCTGCAAAGGATAAAGAAT
NM_001190848.1      CCAGAAGACCCAGCAGTTTATAAACCACTCTCCCAGGAAGAGCTGCAAAGGATAAAGAAT
                    ************************************************************

HsCD00515947        GAGAAAAAACAGAAACAAAATGAGAGAAAACAGAAAATATCAGAAAATCGCAAACATTTG
NM_001190849.1      GAGAAAAAACAGAAACAAAATGAGAGAAAACAGAAAATATCAGAAAATCGCAAACATTTG
NM_001190850.1      GAGAAAAAACAGAAACAAAATGAGAGAAAACAGAAAATATCAGAAAATCGCAAACATTTG
NM_001190847.1      GAGAAAAAACAGAAACAAAATGAGAGAAAACAGAAAATATCAGAAAATCGCAAACATTTG
NM_001008225.2      GAGAAAAAACAGAAACAAAATGAGAGAAAACAGAAAATATCAGAAAATCGCAAACATTTG
NM_013316.3         GAGAAAAAACAGAAACAAAATGAGAGAAAACAGAAAATATCAGAAAATCGCAAACATTTG
NM_001190848.1      GAGAAAAAACAGAAACAAAATGAGAGAAAACAGAAAATATCAGAAAATCGCAAACATTTG
                    ************************************************************

HsCD00515947        GCTAGTGTACGTGTCGTACAAAAAAACCTCGTCTTTGTTGTAGGTTTATCTCAGCGCCTA
NM_001190849.1      GCTAGTGTACGTGTCGTACAAAAAAACCTCGTCTTTGTTGTAGGTTTATCTCAGCGCCTA
NM_001190850.1      GCTAGTGTACGTGTCGTACAAAAAAACCTCGTCTTTGTTGTAGGTTTATCTCAGCGCCTA
NM_001190847.1      GCTAGTGTACGTGTCGTACAAAAAAACCTCGTCTTTGTTGTAGGTTTATCTCAGCGCCTA
NM_001008225.2      GCTAGTGTACGTGTCGTACAAAAAAACCTCGTCTTTGTTGTAGGTTTATCTCAGCGCCTA
NM_013316.3         GCTAGTGTACGTGTCGTACAAAAAAACCTCGTCTTTGTTGTAGGTTTATCTCAGCGCCTA
NM_001190848.1      GCTAGTGTACGTGTCGTACAAAAAAACCTCGTCTTTGTTGTAGGTTTATCTCAGCGCCTA
                    ************************************************************

HsCD00515947        GCAGACCCAGAGGTTTTAAAACGACCAGAATATTTTGGGAAGTTTGGTAAAATACATAAA
NM_001190849.1      GCAGACCCAGAGGTTTTAAAACGACCAGAATATTTTGGGAAGTTTGGTAAAATACATAAA
NM_001190850.1      GCAGACCCAGAGGTTTTAAAACGACCAGAATATTTTGGGAAGTTTGGTAAAATACATAAA
NM_001190847.1      GCAGACCCAGAGGTTTTAAAACGACCAGAATATTTTGGGAAGTTTGGTAAAATACATAAA
NM_001008225.2      GCAGACCCAGAGGTTTTAAAACGACCAGAATATTTTGGGAAGTTTGGTAAAATACATAAA
NM_013316.3         GCAGACCCAGAGGTTTTAAAACGACCAGAATATTTTGGGAAGTTTGGTAAAATACATAAA
NM_001190848.1      GCAGACCCAGAGGTTTTAAAACGACCAGAATATTTTGGGAAGTTTGGTAAAATACATAAA
                    ************************************************************

HsCD00515947        GTTGTCATCAATAATAGCACATCATATGCAGGCTCACAGGGTCCAAGTGCCAGTGCTTAT
NM_001190849.1      GTTGTCATCAATAATAGCACATCATATGCAGGCTCACAGGGTCCAAGTGCCAGTGCTTAT
NM_001190850.1      GTTGTCATCAATAATAGCACATCATATGCAGGCTCACAGGGTCCAAGTGCCAGTGCTTAT
NM_001190847.1      GTTGTCATCAATAATAGCACATCATATGCAGGCTCACAGGGTCCAAGTGCCAGTGCTTAT
NM_001008225.2      GTTGTCATCAATAATAGCACATCATATGCAGGCTCACAGGGTCCAAGTGCCAGTGCTTAT
NM_013316.3         GTTGTCATCAATAATAGCACATCATATGCAGGCTCACAGGGTCCAAGTGCCAGTGCTTAT
NM_001190848.1      GTTGTCATCAATAATAGCACATCATATGCAGGCTCACAGGGTCCAAGTGCCAGTGCTTAT
                    ************************************************************

HsCD00515947        GTAACCTATATCCGGTCAGAAGACGCTCTCAGAGCCATACAGTGTGTCAACAATGTGGTA
NM_001190849.1      GTAACCTATATCCGGTCAGAAGACGCTCTCAGAGCCATACAGTGTGTCAACAATGTGGTA
NM_001190850.1      GTAACCTATATCCGGTCAGAAGACGCTCTCAGAGCCATACAGTGTGTCAACAATGTGGTA
NM_001190847.1      GTAACCTATATCCGGTCAGAAGACGCTCTCAGAGCCATACAGTGTGTCAACAATGTGGTA
NM_001008225.2      GTAACCTATATCCGGTCAGAAGACGCTCTCAGAGCCATACAGTGTGTCAACAATGTGGTA
NM_013316.3         GTAACCTATATCCGGTCAGAAGACGCTCTCAGAGCCATACAGTGTGTCAACAATGTGGTA
NM_001190848.1      GTAACCTATATCCGGTCAGAAGACGCTCTCAGAGCCATACAGTGTGTCAACAATGTGGTA
                    ************************************************************

HsCD00515947        GTAGATGGCAGAACACTTAAGGCATCTCTAGGTACAACAAAATACTGCAGTTACTTCTTA
NM_001190849.1      GTAGATGGCAGAACACTTAAGGCATCTCTAGGTACAACAAAATACTGCAGTTACTTCTTA
NM_001190850.1      GTAGATGGCAGAACACTTAAGGCATCTCTAGGTACAACAAAATACTGCAGTTACTTCTTA
NM_001190847.1      GTAGATGGCAGAACACTTAAGGCATCTCTAGGTACAACAAAATACTGCAGTTACTTCTTA
NM_001008225.2      GTAGATGGCAGAACACTTAAGGCATCTCTAGGTACAACAAAATACTGCAGTTACTTCTTA
NM_013316.3         GTAGATGGCAGAACACTTAAGGCATCTCTAGGTACAACAAAATACTGCAGTTACTTCTTA
NM_001190848.1      GTAGATGGCAGAACACTTAAGGCATCTCTAGGTACAACAAAATACTGCAGTTACTTCTTA
                    ************************************************************

HsCD00515947        AAGAATATGCAGTGTCCAAAACCTGACTGCATGTATCTTCATGAATTGGGGGATGAGGCG
NM_001190849.1      AAGAATATGCAGTGTCCAAAACCTGACTGCATGTATCTTCATGAATTGGGGGATGAGGCG
NM_001190850.1      AAGAATATGCAGTGTCCAAAACCTGACTGCATGTATCTTCATGAATTGGGGGATGAGGCG
NM_001190847.1      AAGAATATGCAGTGTCCAAAACCTGACTGCATGTATCTTCATGAATTGGGGGATGAGGCG
NM_001008225.2      AAGAATATGCAGTGTCCAAAACCTGACTGCATGTATCTTCATGAATTGGGGGATGAGGCG
NM_013316.3         AAGAATATGCAGTGTCCAAAACCTGACTGCATGTATCTTCATGAATTGGGGGATGAGGCG
NM_001190848.1      AAGAATATGCAGTGTCCAAAACCTGACTGCATGTATCTTCATGAATTGGGGGATGAGGCG
                    ************************************************************

HsCD00515947        GCCAGCTTCACAAAAGAGGAAATGCAGGCGGGTAAACACCAAGAATATGAACAGAAGCTA
NM_001190849.1      GCCAGCTTCACAAAAGAGGAAATGCAGGCGGGTAAACACCAAGAATATGAACAGAAGCTA
NM_001190850.1      GCCAGCTTCACAAAAGAGGAAATGCAGGCGGGTAAACACCAAGAATATGAACAGAAGCTA
NM_001190847.1      GCCAGCTTCACAAAAGAGGAAATGCAGGCGGGTAAACACCAAGAATATGAACAGAAGCTA
NM_001008225.2      GCCAGCTTCACAAAAGAGGAAATGCAGGCGGGTAAACACCAAGAATATGAACAGAAGCTA
NM_013316.3         GCCAGCTTCACAAAAGAGGAAATGCAGGCGGGTAAACACCAAGAATATGAACAGAAGCTA
NM_001190848.1      GCCAGCTTCACAAAAGAGGAAATGCAGGCGGGTAAACACCAAGAATATGAACAGAAGCTA
                    ************************************************************

HsCD00515947        CTTCAAGAATTATATAAATTAAATCCCAATTTTCTTCAGCTATCTACGGGTTCAGTTGAT
NM_001190849.1      CTTCAAGAATTATATAAATTAAATCCCAATTTTCTTCAGCTATCTACGGGTTCAGTTGAT
NM_001190850.1      CTTCAAGAATTATATAAATTAAATCCCAATTTTCTTCAGCTATCTACGGGTTCAGTTGAT
NM_001190847.1      CTTCAAGAATTATATAAATTAAATCCCAATTTTCTTCAGCTATCTACGGGTTCAGTTGAT
NM_001008225.2      CTTCAAGAATTATATAAATTAAATCCCAATTTTCTTCAGCTATCTACGGGTTCAGTTGAT
NM_013316.3         CTTCAAGAATTATATAAATTAAATCCCAATTTTCTTCAGCTATCTACGGGTTCAGTTGAT
NM_001190848.1      CTTCAAGAATTATATAAATTAAATCCCAATTTTCTTCAGCTATCTACGGGTTCAGTTGAT
                    ************************************************************

HsCD00515947        AAAAATAAGAACAAAGTGACACCACTGCAGAG---------CCCCATTGACAAACCTTCA
NM_001190849.1      AAAAATAAGAACAAAGTGACACCACTGCAGAG---------CCCCATTGACAAACCTTCA
NM_001190850.1      AAAAATAAGAACAAAGTGACACCACTGCAGAGGTACGATACCCCCATTGACAAACCTTCA
NM_001190847.1      AAAAATAAGAACAAAGTGACACCACTGCAGAGGTACGATACCCCCATTGACAAACCTTCA
NM_001008225.2      AAAAATAAGAACAAAGTGACACCACTGCAGAG---------CCCCATTGACAAACCTTCA
NM_013316.3         AAAAATAAGAACAAAGTGACACCACTGCAGAG---------CCCCATTGACAAACCTTCA
NM_001190848.1      AAAAATAAGAACAAAGTGACACCACTGCAGAGGTACGATACCCCCATTGACAAACCTTCA
                    ********************************         *******************

HsCD00515947        GATTCTCTCAGTATAGGGAACGGTGATAATTCCCAGCAGATATCTAACAGTGATACGCCT
NM_001190849.1      GATTCTCTCAGTATAGGGAACGGTGATAATTCCCAGCAGATATCTAACAGTGATACGCCT
NM_001190850.1      GATTCTCTCAGTATAGGGAACGGTGATAATTCCCAGCAGATATCTAACAGTGATACGCCT
NM_001190847.1      GATTCTCTCAGTATAGGGAACGGTGATAATTCCCAGCAGATATCTAACAGTGATACGCCT
NM_001008225.2      GATTCTCTCAGTATAGGGAACGGTGATAATTCCCAGCAGATATCTAACAGTGATACGCCT
NM_013316.3         GATTCTCTCAGTATAGGGAACGGTGATAATTCCCAGCAGATATCTAACAGTGATACGCCT
NM_001190848.1      GATTCTCTCAGTATAGGGAACGGTGATAATTCCCAGCAGATATCTAACAGTGATACGCCT
                    ************************************************************

HsCD00515947        TCACCACCACCTGGTTTGTCAAAATCCAATCCAGTCATCCCCATCAGTTCATCCAATCAC
NM_001190849.1      TCACCACCACCTGGTTTGTCAAAATCCAATCCAGTCATCCCCATCAGTTCATCCAATCAC
NM_001190850.1      TCACCACCACCTGGTTTGTCAAAATCCAATCCAGTCATCCCCATCAGTTCATCCAATCAC
NM_001190847.1      TCACCACCACCTGGTTTGTCAAAATCCAATCCAGTCATCCCCATCAGTTCATCCAATCAC
NM_001008225.2      TCACCACCACCTGGTTTGTCAAAATCCAATCCAGTCATCCCCATCAGTTCATCCAATCAC
NM_013316.3         TCACCACCACCTGGTTTGTCAAAATCCAATCCAGTCATCCCCATCAGTTCATCCAATCAC
NM_001190848.1      TCACCACCACCTGGTTTGTCAAAATCCAATCCAGTCATCCCCATCAGTTCATCCAATCAC
                    ************************************************************

HsCD00515947        AGTGCACGGTCCCCTTTTGAAGGGGCAGTAACAGAGTCACAGTCGTTATTCTCAGACATT
NM_001190849.1      AGTGCACGGTCCCCTTTTGAAGGGGCAGTAACAGAGTCACAGTCGTTATTCTCAGACAAT
NM_001190850.1      AGTGCACGGTCCCCTTTTGAAGGGGCAGTAACAGAGTCACAGTCGTTATTCTCAGACAAT
NM_001190847.1      AGTGCACGGTCCCCTTTTGAAGGGGCAGTAACAGAGTCACAGTCGTTATTCTCAGACAAT
NM_001008225.2      AGTGCACGGTCCCCTTTTGAAGGGGCAGTAACAGAGTCACAGTCGTTATTCTCAGACAAT
NM_013316.3         AGTGCACGGTCCCCTTTTGAAGGGGCAGTAACAGAGTCACAGTCGTTATTCTCAGACAAT
NM_001190848.1      AGTGCACGGTCCCCTTTTGAAGGGGCAGTAACAGAGTCACAGTCGTTATTCTCAGACAAT
                    **********************************************************:*

HsCD00515947        TTTCGCCATCCCAACCCTATCCCAAGTGGGCTTCCTCCTTTCCCCAGCTCCCCACAGACA
NM_001190849.1      TTTCGCCATCCCAACCCTATCCCAAGTGGGCTTCCTCCTTTCCCCAGCTCCCCACAGACA
NM_001190850.1      TTTCGCCATCCCAACCCTATCCCAAGTGGGCTTCCTCCTTTCCCCAGCTCCCCACAGACA
NM_001190847.1      TTTCGCCATCCCAACCCTATCCCAAGTGGGCTTCCTCCTTTCCCCAGCTCCCCACAGACA
NM_001008225.2      TTTCGCCATCCCAACCCTATCCCAAGTGGGCTTCCTCCTTTCCCCAGCTCCCCACAGACA
NM_013316.3         TTTCGCCATCCCAACCCTATCCCAAGTGGGCTTCCTCCTTTCCCCAGCTCCCCACAGACA
NM_001190848.1      TTTCGCCATCCCAACCCTATCCCAAGTGGGCTTCCTCCTTTCCCCAGCTCCCCACAGACA
                    ************************************************************

HsCD00515947        TCCAGTGACTGGCCTACAGCACCAGAACCACAGAGCCTCTTCACATCAGAAACAATCCCA
NM_001190849.1      TCCAGTGACTGGCCTACAGCACCAGAACCACAGAGCCTCTTCACATCAGAAACAATCCCA
NM_001190850.1      TCCAGTGACTGGCCTACAGCACCAGAACCACAGAGCCTCTTCACATCAGAAACAATCCCA
NM_001190847.1      TCCAGTGACTGGCCTACAGCACCAGAACCACAGAGCCTCTTCACATCAGAAACAATCCCA
NM_001008225.2      TCCAGTGACTGGCCTACAGCACCAGAACCACAGAGCCTCTTCACATCAGAAACAATCCCA
NM_013316.3         TCCAGTGACTGGCCTACAGCACCAGAACCACAGAGCCTCTTCACATCAGAAACAATCCCA
NM_001190848.1      TCCAGTGACTGGCCTACAGCACCAGAACCACAGAGCCTCTTCACATCAGAAACAATCCCA
                    ************************************************************

HsCD00515947        GTATCATCCTCTACAGACTGGCAAGCAGCTTTTGGCTTTGGTTCTTCTAAACAACCAGAG
NM_001190849.1      GTATCATCCTCTACAGACTGGCAAGCAGCTTTTGGCTTTGGTTCTTCTAAACAACCAGAG
NM_001190850.1      GTATCATCCTCTACAGACTGGCAAGCAGCTTTTGGCTTTGGTTCTTCTAAACAACCAGAG
NM_001190847.1      GTATCATCCTCTACAGACTGGCAAGCAGCTTTTGGCTTTGGTTCTTCTAAACAACCAGAG
NM_001008225.2      GTATCATCCTCTACAGACTGGCAAGCAGCTTTTGGCTTTGGTTCTTCTAAACAACCAGAG
NM_013316.3         GTATCATCCTCTACAGACTGGCAAGCAGCTTTTGGCTTTGGTTCTTCTAAACAACCAGAG
NM_001190848.1      GTATCATCCTCTACAGACTGGCAAGCAGCTTTTGGCTTTGGTTCTTCTAAACAACCAGAG
                    ************************************************************

HsCD00515947        GATGACTTGGGTTTTGATCCCTTCGATGTCACTCGAAAAGCCTTAGCAGACCTGATTGAG
NM_001190849.1      GATGACTTGGGTTTTGATCCCTTCGATGTCACTCGAAAAGCCTTAGCAGACCTGATTGAG
NM_001190850.1      GATGACTTGGGTTTTGATCCCTTCGATGTCACTCGAAAAGCCTTAGCAGACCTGATTGAG
NM_001190847.1      GATGACTTGGGTTTTGATCCCTTCGATGTCACTCGAAAAGCCTTAGCAGACCTGATTGAG
NM_001008225.2      GATGACTTGGGTTTTGATCCCTTCGATGTCACTCGAAAAGCCTTAGCAGACCTGATTGAG
NM_013316.3         GATGACTTGGGTTTTGATCCCTTCGATGTCACTCGAAAAGCCTTAGCAGACCTGATTGAG
NM_001190848.1      GATGACTTGGGTTTTGATCCCTTCGATGTCACTCGAAAAGCCTTAGCAGACCTGATTGAG
                    ************************************************************

HsCD00515947        AAGGAACTGTCCGTTCAAGACCAACCTTCCCTTTCGCCCACATCTCTTCAGAACTCCTCT
NM_001190849.1      AAGGAACTGTCCGTTCAAGACCAACCTTCCCTTTCGCCCACATCTCTTCAGAACTCCTCT
NM_001190850.1      AAGGAACTGTCCGTTCAAGACCAACCTTCCCTTTCGCCCACATCTCTTCAGAACTCCTCT
NM_001190847.1      AAGGAACTGTCCGTTCAAGACCAACCTTCCCTTTCGCCCACATCTCTTCAGAACTCCTCT
NM_001008225.2      AAGGAACTGTCCGTTCAAGACCAACCTTCCCTTTCGCCCACATCTCTTCAGAACTCCTCT
NM_013316.3         AAGGAACTGTCCGTTCAAGACCAACCTTCCCTTTCGCCCACATCTCTTCAGAACTCCTCT
NM_001190848.1      AAGGAACTGTCCGTTCAAGACCAACCTTCCCTTTCGCCCACATCTCTTCAGAACTCCTCT
                    ************************************************************

HsCD00515947        TCACACACTACAACCGCCAAAGGTCCAGGCTCTGGATTCCTGCATCCTGCTGCAGCTACA
NM_001190849.1      TCACACACTACAACCGCCAAAGGTCCAGGCTCTGGATTCCTGCATCCTGCTGCAGCTACA
NM_001190850.1      TCACACACTACAACCGCCAAAGGTCCAGGCTCTGGATTCCTGCATCCTGCTGCAGCTACA
NM_001190847.1      TCACACACTACAACCGCCAAAGGTCCAGGCTCTGGATTCCTGCATCCTGCTGCAGCTACA
NM_001008225.2      TCACACACTACAACCGCCAAAGGTCCAGGCTCTGGATTCCTGCATCCTGCTGCAGCTACA
NM_013316.3         TCACACACTACAACCGCCAAAGGTCCAGGCTCTGGATTCCTGCATCCTGCTGCAGCTACA
NM_001190848.1      TCACACACTACAACCGCCAAAGGTCCAGGCTCTGGATTCCTGCATCCTGCTGCAGCTACA
                    ************************************************************

HsCD00515947        AATGCCAATTCTCTCAATAGTACCTTTTCAGTCTTGCCCCAGAGGTTCCCTCAATTTCAG
NM_001190849.1      AATGCCAATTCTCTCAATAGTACCTTTTCAGTCTTGCCCCAGAGGTTCCCTCAATTTCAG
NM_001190850.1      AATGCCAATTCTCTCAATAGTACCTTTTCAGTCTTGCCCCAGAGGTTCCCTCAATTTCAG
NM_001190847.1      AATGCCAATTCTCTCAATAGTACCTTTTCAGTCTTGCCCCAGAGGTTCCCTCAATTTCAG
NM_001008225.2      AATGCCAATTCTCTCAATAGTACCTTTTCAGTCTTGCCCCAGAGGTTCCCTCAATTTCAG
NM_013316.3         AATGCCAATTCTCTCAATAGTACCTTTTCAGTCTTGCCCCAGAGGTTCCCTCAATTTCAG
NM_001190848.1      AATGCCAATTCTCTCAATAGTACCTTTTCAGTCTTGCCCCAGAGGTTCCCTCAATTTCAG
                    ************************************************************

HsCD00515947        CAGCACCGAGCGGTTTATAATTCATTCAGTTTTCCAGGCCAGGCAGCCCGCTATCCTTGG
NM_001190849.1      CAGCACCGAGCGGTTTATAATTCATTCAGTTTTCCAGGCCAGGCAGCCCGCTATCCTTGG
NM_001190850.1      CAGCACCGAGCGGTTTATAATTCATTCAGTTTTCCAGGCCAGGCAGCCCGCTATCCTTGG
NM_001190847.1      CAGCACCGAGCGGTTTATAATTCATTCAGTTTTCCAGGCCAGGCAGCCCGCTATCCTTGG
NM_001008225.2      CAGCACCGAGCGGTTTATAATTCATTCAGTTTTCCAGGCCAGGCAGCCCGCTATCCTTGG
NM_013316.3         CAGCACCGAGCGGTTTATAATTCATTCAGTTTTCCAGGCCAGGCAGCCCGCTATCCTTGG
NM_001190848.1      CAGCACCGAGCGGTTTATAATTCATTCAGTTTTCCAGGCCAGGCAGCCCGCTATCCTTGG
                    ************************************************************

HsCD00515947        ATGGCCTTTCCACGCAATAGCATCATGCACTTGAACCACACAGCAAACCCCACCTCAAAT
NM_001190849.1      ATGGCCTTTCCACGCAATAGCATCATGCACTTGAACCACACAGCAAACCCCACCTCAAAT
NM_001190850.1      ATGGCCTTTCCACGCAATAGCATCATGCACTTGAACCACACAGCAAACCCCACCTCAAAT
NM_001190847.1      ATGGCCTTTCCACGCAATAGCATCATGCACTTGAACCACACAGCAAACCCCACCTCAAAT
NM_001008225.2      ATGGCCTTTCCACGCAATAGCATCATGCACTTGAACCACACAGCAAACCCCACCTCAAAT
NM_013316.3         ATGGCCTTTCCACGCAATAGCATCATGCACTTGAACCACACAGCAAACCCCACCTCAAAT
NM_001190848.1      ATGGCCTTTCCACGCAATAGCATCATGCACTTGAACCACACAGCAAACCCCACCTCAAAT
                    ************************************************************

HsCD00515947        AGTAATTTCTTGGACTTGAATCTCCCGCCACAGCACAACACAGGTCTGGGAGGGATCCCT
NM_001190849.1      AGTAATTTCTTGGACTTGAATCTCCCGCCACAGCACAACACAGGTCTGGGAGGGATCCCT
NM_001190850.1      AGTAATTTCTTGGACTTGAATCTCCCGCCACAGCACAACACAGGTCTGGGAGGGATCCCT
NM_001190847.1      AGTAATTTCTTGGACTTGAATCTCCCGCCACAGCACAACACAGGTCTGGGAGGGATCCCT
NM_001008225.2      AGTAATTTCTTGGACTTGAATCTCCCGCCACAGCACAACACAGGTCTGGGAGGGATCCCT
NM_013316.3         AGTAATTTCTTGGACTTGAATCTCCCGCCACAGCACAACACAGGTCTGGGAGGGATCCCT
NM_001190848.1      AGTAATTTCTTGGACTTGAATCTCCCGCCACAGCACAACACAGGTCTGGGAGGGATCCCT
                    ************************************************************

HsCD00515947        G-----------------------------------------------------------
NM_001190849.1      GTAGCAGACAACAGCAGTTCTGTAGAGAGTTTAAATATGAAGGAATGGCAGGACGGGCTA
NM_001190850.1      GTAGCAGACAACAGCAGTTCTGTAGAGAGTTTAAATATGAAGGAATGGCAGGACGGGCTA
NM_001190847.1      G-----------------------------------------------------------
NM_001008225.2      G-----------------------------------------------------------
NM_013316.3         G-----------------------------------------------------------
NM_001190848.1      G-----------------------------------------------------------
                    *                                                           

HsCD00515947        ------------------------------------------------------------
NM_001190849.1      AGGGCACTTCTACCCAACATTAACATCAACTTTGGTGGACTGCCCAATTCTTCTTCCCCC
NM_001190850.1      AGGGCACTTCTACCCAACATTAACATCAACTTTGGTGGACTGCCCAATTCTTCTTCCCCC
NM_001190847.1      ------------------------------------------------------------
NM_001008225.2      ------------------------------------------------------------
NM_013316.3         ------------------------------------------------------------
NM_001190848.1      ------------------------------------------------------------
                                                                                

HsCD00515947        ------------------------------------------------------------
NM_001190849.1      TCCAACGCCAACCACAGTGCACCAACGTCCAACACTGCCACCACCGACAGCCTGAGTTGG
NM_001190850.1      TCCAACGCCAACCACAGTGCACCAACGTCCAACACTGCCACCACCGACAGCCTGAGTTGG
NM_001190847.1      ------------------------------------------------------------
NM_001008225.2      ------------------------------------------------------------
NM_013316.3         ------------------------------------------------------------
NM_001190848.1      ------------------------------------------------------------
                                                                                

HsCD00515947        ---------------------------------TAGCAGGGGAAGAAGAGGTGAAGGTTT
NM_001190849.1      GACAGCCCTGGCAGCTGGACAGACCCAGCCATCATCACAGGTATTCCAGCGTCTTCAGGA
NM_001190850.1      GACAGCCCTGGCAGCTGGACAGACCCAGCCATCATCACAGGTATTCCAGCGTCTTCAGGA
NM_001190847.1      ----------------------------------TAGCAGGTATTCCAGCGTCTTCAGGA
NM_001008225.2      ---------------------------------TAGCAGGGGAAGAAGAGGTGAAGGTTT
NM_013316.3         ----------------------------------TAGCAGGTATTCCAGCGTCTTCAGGA
NM_001190848.1      ---------------------------------TAGCAGGGGAAGAAGAGGTGAAGGTTT
                                                      :  ..** *: .... ** :: .  :

HsCD00515947        CGACCATGCCACTGTCAACCTCTTCCCATTCATTACAACAAGGACAGCAGCCTACAAGTC
NM_001190849.1      AACAGTTTAGACTCTCTTCAAGATGACAATCCTCCACACTGGCTAAAATCCCTTCAGGCC
NM_001190850.1      AACAGTTTAGACTCTCTTCAAGATGACAATCCTCCACACTGGCTAAAATCCCTTCAGGCC
NM_001190847.1      AACAGTTTAGACTCTCTTCAAGATGACAATCCTCCACACTGGCTAAAATCCCTTCAGGCC
NM_001008225.2      CGACCATGCCACTGTCAACCTCTTCCCATTCATTACAACAAGGACAGCAGCCTACAAGTC
NM_013316.3         AACAGTTTAGACTCTCTTCAAGATGACAATCCTCCACACTGGCTAAAATCCCTTCAGGCC
NM_001190848.1      CGACCATGCCACTGTCAACCTCTTCCCATTCATTACAACAAGGACAGCAGCCTACAAGTC
                    .... :* . *** **::*.: :* .**:**.* ...**:.* :.*..: ***:**.* *

HsCD00515947        TCCACACTACTGTGGCC-------------------------------------------
NM_001190849.1      CTCACAGAGATGGACGGCCCCAGCGCTGCTCCATCACAGACCCACCACAGCGCCCCCTTC
NM_001190850.1      CTCACAGAGATGGACGGCCCCAGCGCTGCTCCATCACAGACCCACCACAGCGCCCCCTTC
NM_001190847.1      CTCACAGAGATGGACGGCCCCAGCGCTGCTCCATCACAGACCCACCACAGCGCCCCCTTC
NM_001008225.2      TCCACACTACTGTGGCCTGA----------------------------------------
NM_013316.3         CTCACAGAGATGGACGGCCCCAGCGCTGCTCCATCACAGACCCACCACAGCGCCCCCTTC
NM_001190848.1      TCCACACTACTGTGGCCTGA----------------------------------------
                      **** :..** .                                              

HsCD00515947        ------------------------------------------------------------
NM_001190849.1      AGCACACAGATCCCGCTGCACAGAGCCAGTTGGAATCCCTACCCTCCTCCTTCAAACCCT
NM_001190850.1      AGCACACAGATCCCGCTGCACAGAGCCAGTTGGAATCCCTACCCTCCTCCTTCAAACCCT
NM_001190847.1      AGCACACAGATCCCGCTGCACAGAGCCAGTTGGAATCCCTACCCTCCTCCTTCAAACCCT
NM_001008225.2      ------------------------------------------------------------
NM_013316.3         AGCACACAGATCCCGCTGCACAGAGCCAGTTGGAATCCCTACCCTCCTCCTTCAAACCCT
NM_001190848.1      ------------------------------------------------------------
                                                                                

HsCD00515947        ------------------------------------------------------------
NM_001190849.1      TCCAGCTTCCACTCCCCACCCCCAGGCTTTCAGACAGCCTTCAGACCCCCCAGCAAAACC
NM_001190850.1      TCCAGCTTCCACTCCCCACCCCCAGGCTTTCAGACAGCCTTCAGACCCCCCAGCAAAACC
NM_001190847.1      TCCAGCTTCCACTCCCCACCCCCAGGCTTTCAGACAGCCTTCAGACCCCCCAGCAAAACC
NM_001008225.2      ------------------------------------------------------------
NM_013316.3         TCCAGCTTCCACTCCCCACCCCCAGGCTTTCAGACAGCCTTCAGACCCCCCAGCAAAACC
NM_001190848.1      ------------------------------------------------------------
                                                                                

HsCD00515947        ------------------------------------------
NM_001190849.1      CCCACAGATTTACTACAGAGTTCAACACTGGACCGCCATTAG
NM_001190850.1      CCCACAGATTTACTACAGAGTTCAACACTGGACCGCCATTAG
NM_001190847.1      CCCACAGATTTACTACAGAGTTCAACACTGGACCGCCATTAG
NM_001008225.2      ------------------------------------------
NM_013316.3         CCCACAGATTTACTACAGAGTTCAACACTGGACCGCCATTAG
NM_001190848.1      ------------------------------------------
                                                              

Pathways

Reactome : Deadenylation of mRNA
Reactome : Deadenylation-dependent mRNA decay
Reactome : Gene Expression
Reactome : Metabolism of RNA
Reactome : Metabolism of mRNA

Protein

SMART domain : RRM_1 : RNA recognition motif
SMART domain : RRM : RNA recognition motif
HPRD : 05369

Clone

Cloning Information : 669679
Original Clone ID : ccsbBroadEn_06649

Organism


TAX_ID : 9606
Species Specific ID: 4850

Genome

Chromosome : 7
Map Location : 7q33
Ensembl : ENSG00000080802

Reagents

Labome : CNOT4-antibody