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CAPN9 (Homo sapiens) in pENTR223 (Gateway donor/master vector)

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Explanation of Terms


Gene: Gene Symbol:  CAPN9
Gene Name:  calpain 9
Sequence             
Original Clone ID: ccsbBroadEn_11545
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pENTR223               Format:  FUSION
Source: The ORFeome Collaboration
Description: Original GenBank Accession: BC027993.1
Comments: None
Mutation/
Discrepancy :
No / No
Publications: None
Authors: The ORFeome Collaboration
Dana-Farber Cancer Institute
Broad Institute of Harvard and Massachusetts Institute of Technology (MIT)
David E Hill
David E Root
Harvard Medical School
HsCD00515986

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 1882nts         Open reading frame : 1 to 1882
Reference Sequence Alignment

ATGCCTTACCTCTACCGGGCCCCAGGGCCTCAGGCACACCCGGTTCCCAAGGACGCCCGG
ATCACCCACTCCTCAGGCCAGAGCTTTGAGCAAATGAGGCAGGAGTGCCTGCAGAGAGGC
ACCCTGTTTGAGGATGCAGACTTCCCAGCCAGCAATTCCTCCCTGTTCTACAGTGAGAGG
CCGCAGATCCCCTTTGTGTGGAAACGACCAGGGTTCTGGCAGCACAGTGAGTGGCTGGAC
GTGGTGATCGATGACCGCCTGCCCACCTTCAGGGACCGCTTGGTTTTCCTCCACTCTGCC
GACCACAACGAGTTCTGGAGCGCCTTGCTGGAAAAAGCCTACGCCAAGCTAAATGGGAGC
TATGAAGCTCTGAAGGGAGGCAGCGCCATCGAGGCCATGGAAGACTTCACTGGGGGTGTG
GCAGAGACCTTCCAAACTAAAGAGGCCCCCGAGAACTTCTATGAGATTCTAGAGAAGGCT
TTGAAGAGAGGCTCCCTGCTGGGCTGCTTCATTGATACCAGAAGTGCTGCAGAATCTGAG
GCCCGGACGCCGTTTGGTCTTATTAAGGGTCATGCCTACAGTGTAACGGGAATTGACCAG
GTAAGCTTCCGAGGCCAGAGAATCGAGCTCATCCGAATCCGGAACCCTTGGGGCCAGGTT
GAGTGGAACGGGTCGTGGAGCGACAGTTCTCCGGAGTGGCGTTCTGTTGGTCCAGCTGAG
CAGAAGCGTCTGTGTCACACTGCTCTGGATGATGGGGAATTCTGGATGGCATTTCAGGAC
TTCAAGGCCCACTTTGATAAAGTGGAGATCTGCAACCTCACTCCCGATGCCCTGGAGGAA
GACGCGATCCACAAATGGGAGGTGACGGTCCATCAGGGAAGCTGGGTTCGCGGCTCCACG
GCTGGGGGCTGCCGCAATTTCCTGGATACCTTTTGGACCAATCCACAAATAAAATTGTCT
CTGACTGAGAAAGATGAGGGGCAGGAGGAGTGTAGTTTCCTTGTAGCCCTGATGCAGAAA
GATAGAAGGAAACTCAAGAGATTTGGTGCCAATGTGCTGACAATCGGCTATGCCATTTAT
GAGTGCCCTGACAAAGACGAACACCTGAACAAAGACTTCTTCAGATACCACGCTTCTCGG
GCCAGAAGCAAGACGTTCATCAACCTGAGAGAAGTCTCCGACCGGTTCAAGCTGCCCCCT
GGGGAGTACATCCTGATTCCCAGCACTTTTGAGCCCCACCAGGAAGCTGATTTCTGTCTG
AGAATCTTTTCAGAGAAAAAAGCCATTACCCGGGATATGGATGGAAATGTAGACATTGAC
CTTCCTGAGCCTCCAAAGCCAACTCCACCTGACCAGGAGACAGAGGAGGAGCAGCGGTTT
CGGGCTCTGTTTGAACAAGTCGCTGGTGAGGACATGGAGGTGACAGCAGAGGAACTTGAG
TATGTTTTAAATGCTGTGCTGCAAAAGAAAAAGGACATCAAATTCAAGAAGCTAAGCCTG
ATCTCCTGTAAAAACATCATTTCCCTGATGGACACCAGCGGCAATGGGAAGCTGGAGTTT
GATGAATTCAAAGTGTTCTGGGACAAGCTGAAGCAGTGGATTAACCTTTTCCTTCGGTTT
GATGCTGACAAGTCCGGCACCATGTCTACCTATGAACTACGGACTGCACTGAAAGCTGCA
GGCTTTCAGCTGAGCAGCCACCTCCTGCAGCTGATTGTGCTCAGGTATGCGGATGAGGAG
CTCCAGCTGGACTTCGATGACTTCCTCAACTGCCTGGTCCGGCTGGAGAATGCGAGCCGG
GTGTTCCAGGCTCTCAGTACAAAGAACAAGGAGTTCATTCATCTCAATATAAATGAGTTC
ATCCATTTGACAATGAACATC


Coding Sequence Details
Insert Sequence Verified?: N Verification Method: Verified by the ORFeome collaboration
Mutations:
None
Discrepancy:
None
5' Linker Sequence: None
3' Linker Sequence: None

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  spectinomycin
Bacterial Selection Condition:  100 ug/mL spectinomycin
Growth Condition:  Growth at 37 degrees C in LB supplemented with 100 ug/mL spectinomycin.
Comments:  None
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

         Powered by LabGenius

Vector Name: pENTR223

pENTR223 in advanced viewed

Synonyms: pDONR223, pENTR223-XnCDSYn
Sequencing Primer: Forward:  M13F
Reverse:  M13R
Description: Gateway type (lambda att-type) recombinational cloning entry (master) vector; spectinomycin resistance; recombinational cloning.
Comments: Additional information about this vector is available from the commercial website and at the ORFeome website http://orfeomecollaboration.org/vectors.php; also see supplemental figure 1 of the paper PubMed ID 15489335.
Size (bp): 2815
Parent Vector: None
Empty Vector: None
Properties: Gateway, donor (entry), recombinational cloning
Author Name: Mark Vidal
Publications: PMID: 15489335
Title: Human ORFeome Version 1.1: A Platform for Reverse Proteomics

Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
bacterial origin ori bacterial origin of replication 2220 2753
gene fragment pas 5p stem of pBR primose assembly site 63 73
gene fragment pas prime 3p stem of pBR pas(L) 105 116
recombination site attL1 attL1 recombination site 570 665
recombination site attL2 attL2 recombination site 793 696
selectable marker SpnR spectinomycin resistance gene 1062 2072
trxn termination sequence T1-T2 rrnBT1 and T2 terminators 510 224

 

  • Gene
  • Pathways
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : CAPN9
Symbol Nomenclature : CAPN9
SYNONYM : GC36; nCL-4
Designation : calpain-9|digestive tract-specific calpain|new calpain 4|novel calpain large subunit-4
Full Nomenclature : calpain 9
GENEID : 10753
HGNC : 1486
MIM : 606401
Vega : OTTHUMG00000037779
Target GenBank: None

 

Reference Sequence Alignment

  

HsCD00515986        ATGCCTTACCTCTACCGGGCCCCAGGGCCTCAGGCACACCCGGTTCCCAAGGACGCCCGG
NM_016452.1         ATGCCTTACCTCTACCGGGCCCCAGGGCCTCAGGCACACCCGGTTCCCAAGGACGCCCGG
XM_005273010.1      ATGCCTTACCTCTACCGGGCCCCAGGGCCTCAGGCACACCCGGTTCCCAAGGACGCCCGG
NM_006615.2         ATGCCTTACCTCTACCGGGCCCCAGGGCCTCAGGCACACCCGGTTCCCAAGGACGCCCGG
                    ************************************************************

HsCD00515986        ATCACCCACTCCTCAGGCCAGAGCTTTGAGCAAATGAGGCAGGAGTGCCTGCAGAGAGGC
NM_016452.1         ATCACCCACTCCTCAGGCCAGAGCTTTGAGCAAATGAGGCAGGAGTGCCTGCAGAGAGGC
XM_005273010.1      ATCACCCACTCCTCAGGCCAGAGCTTTGAGCAAATGAGGCAGGAGTGCCTGCAGAGAGGC
NM_006615.2         ATCACCCACTCCTCAGGCCAGAGCTTTGAGCAAATGAGGCAGGAGTGCCTGCAGAGAGGC
                    ************************************************************

HsCD00515986        ACCCTGTTTGAGGATGCAGACTTCCCAGCCAGCAATTCCTCCCTGTTCTACAGTGAGAGG
NM_016452.1         ACCCTGTTTGAGGATGCAGACTTCCCAGCCAGCAATTCCTCCCTGTTCTACAGTGAGAGG
XM_005273010.1      ACCCTGTTTGAGGATGCAGACTTCCCAGCCAGCAATTCCTCCCTGTTCTACAGTGAGAGG
NM_006615.2         ACCCTGTTTGAGGATGCAGACTTCCCAGCCAGCAATTCCTCCCTGTTCTACAGTGAGAGG
                    ************************************************************

HsCD00515986        CCGCAGATCCCCTTTGTGTGGAAACGACCAGGG---------------------------
NM_016452.1         CCGCAGATCCCCTTTGTGTGGAAACGACCAGGGGAAATCGTGAAAAACCCAGAATTCATT
XM_005273010.1      CCGCAGATCCCCTTTGTGTGGAAACGACCAGGG---------------------------
NM_006615.2         CCGCAGATCCCCTTTGTGTGGAAACGACCAGGGGAAATCGTGAAAAACCCAGAATTCATT
                    *********************************                           

HsCD00515986        ------------------------------------------------------------
NM_016452.1         CTTGGAGGGGCCACCAGGACTGATATCTGCCAGGGAGAGCTGGGAGACTGCTGGCTATTA
XM_005273010.1      ------------------------------------------------------------
NM_006615.2         CTTGGAGGGGCCACCAGGACTGATATCTGCCAGGGAGAGCTGGGAGACTGCTGGCTATTA
                                                                                

HsCD00515986        ------------------------------------------------------------
NM_016452.1         GCCGCCATCGCCTCCCTTACGCTTAATCAAAAAGCACTGGCCAGAGTCATCCCCCAGGAC
XM_005273010.1      ------------------------------------------------------------
NM_006615.2         GCCGCCATCGCCTCCCTTACGCTTAATCAAAAAGCACTGGCCAGAGTCATCCCCCAGGAC
                                                                                

HsCD00515986        ------------------------------------------TTCTGGCAGCACAGTGAG
NM_016452.1         CAAAGCTTTGGCCCTGGTTATGCCGGGATATTCCATTTCCAGTTCTGGCAGCACAGTGAG
XM_005273010.1      ------------------------------------------TTCTGGCAGCACAGTGAG
NM_006615.2         CAAAGCTTTGGCCCTGGTTATGCCGGGATATTCCATTTCCAGTTCTGGCAGCACAGTGAG
                                                              ******************

HsCD00515986        TGGCTGGACGTGGTGATCGATGACCGCCTGCCCACCTTCAGGGACCGCTTGGTTTTCCTC
NM_016452.1         TGGCTGGACGTGGTGATCGATGACCGCCTGCCCACCTTCAGGGACCGCTTGGTTTTCCTC
XM_005273010.1      TGGCTGGACGTGGTGATCGATGACCGCCTGCCCACCTTCAGGGACCGCTTGGTTTTCCTC
NM_006615.2         TGGCTGGACGTGGTGATCGATGACCGCCTGCCCACCTTCAGGGACCGCTTGGTTTTCCTC
                    ************************************************************

HsCD00515986        CACTCTGCCGACCACAACGAGTTCTGGAGCGCCTTGCTGGAAAAAGCCTACGCCAAGCTA
NM_016452.1         CACTCTGCCGACCACAACGAGTTCTGGAGCGCCTTGCTGGAAAAAGCCTACGCCAAGCTA
XM_005273010.1      CACTCTGCCGACCACAACGAGTTCTGGAGCGCCTTGCTGGAAAAAGCCTACGCCAAGCTA
NM_006615.2         CACTCTGCCGACCACAACGAGTTCTGGAGCGCCTTGCTGGAAAAAGCCTACGCCAAGCTA
                    ************************************************************

HsCD00515986        AATGGGAGCTATGAAGCTCTGAAGGGAGGCAGCGCCATCGAGGCCATGGAAGACTTCACT
NM_016452.1         AATGGGAGCTATGAAGCTCTGAAGGGAGGCAGCGCCATCGAGGCCATGGAAGACTTCACT
XM_005273010.1      AATGGGAGCTATGAAGCTCTGAAGGGAGGCAGCGCCATCGAGGCCATGGAAGACTTCACT
NM_006615.2         AATGGGAGCTATGAAGCTCTGAAGGGAGGCAGCGCCATCGAGGCCATGGAAGACTTCACT
                    ************************************************************

HsCD00515986        GGGGGTGTGGCAGAGACCTTCCAAACTAAAGAGGCCCCCGAGAACTTCTATGAGATTCTA
NM_016452.1         GGGGGTGTGGCAGAGACCTTCCAAACTAAAGAGGCCCCCGAGAACTTCTATGAGATTCTA
XM_005273010.1      GGGGGTGTGGCAGAGACCTTCCAAACTAAAGAGGCCCCCGAGAACTTCTATGAGATTCTA
NM_006615.2         GGGGGTGTGGCAGAGACCTTCCAAACTAAAGAGGCCCCCGAGAACTTCTATGAGATTCTA
                    ************************************************************

HsCD00515986        GAGAAGGCTTTGAAGAGAGGCTCCCTGCTGGGCTGCTTCATTGATACCAGAAGTGCTGCA
NM_016452.1         GAGAAGGCTTTGAAGAGAGGCTCCCTGCTGGGCTGCTTCATTGATACCAGAAGTGCTGCA
XM_005273010.1      GAGAAGGCTTTGAAGAGAGGCTCCCTGCTGGGCTGCTTCATTGATACCAGAAGTGCTGCA
NM_006615.2         GAGAAGGCTTTGAAGAGAGGCTCCCTGCTGGGCTGCTTCATTGATACCAGAAGTGCTGCA
                    ************************************************************

HsCD00515986        GAATCTGAGGCCCGGACGCCGTTTGGTCTTATTAAGGGTCATGCCTACAGTGTAACGGGA
NM_016452.1         GAATCTGAGGCCCGGACGCCGTTTGGTCTTATTAAGGGTCATGCCTACAGTGTAACGGGA
XM_005273010.1      GAATCTGAGGCCCGGACGCCGTTTGGTCTTATTAAGGGTCATGCCTACAGTGTAACGGGA
NM_006615.2         GAATCTGAGGCCCGGACGCCGTTTGGTCTTATTAAGGGTCATGCCTACAGTGTAACGGGA
                    ************************************************************

HsCD00515986        ATTGACCAGGTAAGCTTCCGAGGCCAGAGAATCGAGCTCATCCGAATCCGGAACCCTTGG
NM_016452.1         ATTGACCAGGTAAGCTTCCGAGGCCAGAGAATCGAGCTCATCCGAATCCGGAACCCTTGG
XM_005273010.1      ATTGACCAGGTAAGCTTCCGAGGCCAGAGAATCGAGCTCATCCGAATCCGGAACCCTTGG
NM_006615.2         ATTGACCAGGTAAGCTTCCGAGGCCAGAGAATCGAGCTCATCCGAATCCGGAACCCTTGG
                    ************************************************************

HsCD00515986        GGCCAGGTTGAGTGGAACGGGTCGTGGAGCGACAGTTCTCCGGAGTGGCGTTCTGTTGGT
NM_016452.1         GGCCAGGTTGAGTGGAACGGGTCGTGGAGCGACAG-------------------------
XM_005273010.1      GGCCAGGTTGAGTGGAACGGGTCGTGGAGCGACAGTTCTCCGGAGTGGCGTTCTGTTGGT
NM_006615.2         GGCCAGGTTGAGTGGAACGGGTCGTGGAGCGACAGTTCTCCGGAGTGGCGTTCTGTTGGT
                    ***********************************                         

HsCD00515986        CCAGCTGAGCAGAAGCGTCTGTGTCACACTGCTCTGGATGATGGGGAATTCTGGATGGCA
NM_016452.1         -----------------------------------------------------GATGGCA
XM_005273010.1      CCAGCTGAGCAGAAGCGTCTGTGTCACACTGCTCTGGATGATGGGGAATTCTGGATGGCA
NM_006615.2         CCAGCTGAGCAGAAGCGTCTGTGTCACACTGCTCTGGATGATGGGGAATTCTGGATGGCA
                                                                         *******

HsCD00515986        TTTCAGGACTTCAAGGCCCACTTTGATAAAGTGGAGATCTGCAACCTCACTCCCGATGCC
NM_016452.1         TTTAAGGACTTCAAGGCCCACTTTGATAAAGTGGAGATCTGCAACCTCACTCCCGATGCC
XM_005273010.1      TTTAAGGACTTCAAGGCCCACTTTGATAAAGTGGAGATCTGCAACCTCACTCCCGATGCC
NM_006615.2         TTTAAGGACTTCAAGGCCCACTTTGATAAAGTGGAGATCTGCAACCTCACTCCCGATGCC
                    ***.********************************************************

HsCD00515986        CTGGAGGAAGACGCGATCCACAAATGGGAGGTGACGGTCCATCAGGGAAGCTGGGTTCGC
NM_016452.1         CTGGAGGAAGACGCGATCCACAAATGGGAGGTGACGGTCCATCAGGGAAGCTGGGTTCGC
XM_005273010.1      CTGGAGGAAGACGCGATCCACAAATGGGAGGTGACGGTCCATCAGGGAAGCTGGGTTCGC
NM_006615.2         CTGGAGGAAGACGCGATCCACAAATGGGAGGTGACGGTCCATCAGGGAAGCTGGGTTCGC
                    ************************************************************

HsCD00515986        GGCTCCACGGCTGGGGGCTGCCGCAATTTCCTGGATACCTTTTGGACCAATCCACAAATA
NM_016452.1         GGCTCCACGGCTGGGGGCTGCCGCAATTTCCTGGATACCTTTTGGACCAATCCACAAATA
XM_005273010.1      GGCTCCACGGCTGGGGGCTGCCGCAATTTCCTGGATACCTTTTGGACCAATCCACAAATA
NM_006615.2         GGCTCCACGGCTGGGGGCTGCCGCAATTTCCTGGATACCTTTTGGACCAATCCACAAATA
                    ************************************************************

HsCD00515986        AAATTGTCTCTGACTGAGAAAGATGAGGGGCAGGAGGAGTGTAGTTTCCTTGTAGCCCTG
NM_016452.1         AAATTGTCTCTGACTGAGAAAGATGAGGGGCAGGAGGAGTGTAGTTTCCTTGTAGCCCTG
XM_005273010.1      AAATTGTCTCTGACTGAGAAAGATGAGGGGCAGGAGGAGTGTAGTTTCCTTGTAGCCCTG
NM_006615.2         AAATTGTCTCTGACTGAGAAAGATGAGGGGCAGGAGGAGTGTAGTTTCCTTGTAGCCCTG
                    ************************************************************

HsCD00515986        ATGCAGAAAGATAGAAGGAAACTCAAGAGATTTGGTGCCAATGTGCTGACAATCGGCTAT
NM_016452.1         ATGCAGAAAGATAGAAGGAAACTCAAGAGATTTGGTGCCAATGTGCTGACAATCGGCTAT
XM_005273010.1      ATGCAGAAAGATAGAAGGAAACTCAAGAGATTTGGTGCCAATGTGCTGACAATCGGCTAT
NM_006615.2         ATGCAGAAAGATAGAAGGAAACTCAAGAGATTTGGTGCCAATGTGCTGACAATCGGCTAT
                    ************************************************************

HsCD00515986        GCCATTTATGAGTGCCCTGACAAAGACGAACACCTGAACAAAGACTTCTTCAGATACCAC
NM_016452.1         GCCATTTATGAGTGCCCTGACAAAGACGAACACCTGAACAAAGACTTCTTCAGATACCAC
XM_005273010.1      GCCATTTATGAGTGCCCTGACAAAGACGAACACCTGAACAAAGACTTCTTCAGATACCAC
NM_006615.2         GCCATTTATGAGTGCCCTGACAAAGACGAACACCTGAACAAAGACTTCTTCAGATACCAC
                    ************************************************************

HsCD00515986        GCTTCTCGGGCCAGAAGCAAGACGTTCATCAACCTGAGAGAAGTCTCCGACCGGTTCAAG
NM_016452.1         GCTTCTCGGGCCAGAAGCAAGACGTTCATCAACCTGAGAGAAGTCTCCGACCGGTTCAAG
XM_005273010.1      GCTTCTCGGGCCAGAAGCAAGACGTTCATCAACCTGAGAGAAGTCTCCGACCGGTTCAAG
NM_006615.2         GCTTCTCGGGCCAGAAGCAAGACGTTCATCAACCTGAGAGAAGTCTCCGACCGGTTCAAG
                    ************************************************************

HsCD00515986        CTGCCCCCTGGGGAGTACATCCTGATTCCCAGCACTTTTGAGCCCCACCAGGAAGCTGAT
NM_016452.1         CTGCCCCCTGGGGAGTACATCCTGATTCCCAGCACTTTTGAGCCCCACCAGGAAGCTGAT
XM_005273010.1      CTGCCCCCTGGGGAGTACATCCTGATTCCCAGCACTTTTGAGCCCCACCAGGAAGCTGAT
NM_006615.2         CTGCCCCCTGGGGAGTACATCCTGATTCCCAGCACTTTTGAGCCCCACCAGGAAGCTGAT
                    ************************************************************

HsCD00515986        TTCTGTCTGAGAATCTTTTCAGAGAAAAAAGCCATTACCCGGGATATGGATGGAAATGTA
NM_016452.1         TTCTGTCTGAGAATCTTTTCAGAGAAAAAAGCCATTACCCGGGATATGGATGGAAATGTA
XM_005273010.1      TTCTGTCTGAGAATCTTTTCAGAGAAAAAAGCCATTACCCGGGATATGGATGGAAATGTA
NM_006615.2         TTCTGTCTGAGAATCTTTTCAGAGAAAAAAGCCATTACCCGGGATATGGATGGAAATGTA
                    ************************************************************

HsCD00515986        GACATTGACCTTCCTGAGCCTCCAAAGCCAACTCCACCTGACCAGGAGACAGAGGAGGAG
NM_016452.1         GACATTGACCTTCCTGAGCCTCCAAAGCCAACTCCACCTGACCAGGAGACAGAGGAGGAG
XM_005273010.1      GACATTGACCTTCCTGAGCCTCCAAAGCCAACTCCACCTGACCAGGAGACAGAGGAGGAG
NM_006615.2         GACATTGACCTTCCTGAGCCTCCAAAGCCAACTCCACCTGACCAGGAGACAGAGGAGGAG
                    ************************************************************

HsCD00515986        CAGCGGTTTCGGGCTCTGTTTGAACAAGTCGCTGGTGAGGACATGGAGGTGACAGCAGAG
NM_016452.1         CAGCGGTTTCGGGCTCTGTTTGAACAAGTCGCTGGTGAGGACATGGAGGTGACAGCAGAG
XM_005273010.1      CAGCGGTTTCGGGCTCTGTTTGAACAAGTCGCTGGTGAGGACATGGAGGTGACAGCAGAG
NM_006615.2         CAGCGGTTTCGGGCTCTGTTTGAACAAGTCGCTGGTGAGGACATGGAGGTGACAGCAGAG
                    ************************************************************

HsCD00515986        GAACTTGAGTATGTTTTAAATGCTGTGCTGCAAAAGAAAAAGGACATCAAATTCAAGAAG
NM_016452.1         GAACTTGAGTATGTTTTAAATGCTGTGCTGCAAAAGAAAAAGGACATCAAATTCAAGAAG
XM_005273010.1      GAACTTGAGTATGTTTTAAATGCTGTGCTGCAAAAGAAAAAGGACATCAAATTCAAGAAG
NM_006615.2         GAACTTGAGTATGTTTTAAATGCTGTGCTGCAAAAGAAAAAGGACATCAAATTCAAGAAG
                    ************************************************************

HsCD00515986        CTAAGCCTGATCTCCTGTAAAAACATCATTTCCCTGATGGACACCAGCGGCAATGGGAAG
NM_016452.1         CTAAGCCTGATCTCCTGTAAAAACATCATTTCCCTGATGGACACCAGCGGCAATGGGAAG
XM_005273010.1      CTAAGCCTGATCTCCTGTAAAAACATCATTTCCCTGATGGACACCAGCGGCAATGGGAAG
NM_006615.2         CTAAGCCTGATCTCCTGTAAAAACATCATTTCCCTGATGGACACCAGCGGCAATGGGAAG
                    ************************************************************

HsCD00515986        CTGGAGTTTGATGAATTCAAAGTGTTCTGGGACAAGCTGAAGCAGTGGATTAACCTTTTC
NM_016452.1         CTGGAGTTTGATGAATTCAAAGTGTTCTGGGACAAGCTGAAGCAGTGGATTAACCTTTTC
XM_005273010.1      CTGGAGTTTGATGAATTCAAAGTGTTCTGGGACAAGCTGAAGCAGTGGATTAACCTTTTC
NM_006615.2         CTGGAGTTTGATGAATTCAAAGTGTTCTGGGACAAGCTGAAGCAGTGGATTAACCTTTTC
                    ************************************************************

HsCD00515986        CTTCGGTTTGATGCTGACAAGTCCGGCACCATGTCTACCTATGAACTACGGACTGCACTG
NM_016452.1         CTTCGGTTTGATGCTGACAAGTCCGGCACCATGTCTACCTATGAACTACGGACTGCACTG
XM_005273010.1      CTTCGGTTTGATGCTGACAAGTCCGGCACCATGTCTACCTATGAACTACGGACTGCACTG
NM_006615.2         CTTCGGTTTGATGCTGACAAGTCCGGCACCATGTCTACCTATGAACTACGGACTGCACTG
                    ************************************************************

HsCD00515986        AAAGCTGCAGGCTTTCAGCTGAGCAGCCACCTCCTGCAGCTGATTGTGCTCAGGTATGCG
NM_016452.1         AAAGCTGCAGGCTTTCAGCTGAGCAGCCACCTCCTGCAGCTGATTGTGCTCAGGTATGCG
XM_005273010.1      AAAGCTGCAGGCTTTCAGCTGAGCAGCCACCTCCTGCAGCTGATTGTGCTCAGGTATGCG
NM_006615.2         AAAGCTGCAGGCTTTCAGCTGAGCAGCCACCTCCTGCAGCTGATTGTGCTCAGGTATGCG
                    ************************************************************

HsCD00515986        GATGAGGAGCTCCAGCTGGACTTCGATGACTTCCTCAACTGCCTGGTCCGGCTGGAGAAT
NM_016452.1         GATGAGGAGCTCCAGCTGGACTTCGATGACTTCCTCAACTGCCTGGTCCGGCTGGAGAAT
XM_005273010.1      GATGAGGAGCTCCAGCTGGACTTCGATGACTTCCTCAACTGCCTGGTCCGGCTGGAGAAT
NM_006615.2         GATGAGGAGCTCCAGCTGGACTTCGATGACTTCCTCAACTGCCTGGTCCGGCTGGAGAAT
                    ************************************************************

HsCD00515986        GCGAGCCGGGTGTTCCAGGCTCTCAGTACAAAGAACAAGGAGTTCATTCATCTCAATATA
NM_016452.1         GCGAGCCGGGTGTTCCAGGCTCTCAGTACAAAGAACAAGGAGTTCATTCATCTCAATATA
XM_005273010.1      GCGAGCCGGGTGTTCCAGGCTCTCAGTACAAAGAACAAGGAGTTCATTCATCTCAATATA
NM_006615.2         GCGAGCCGGGTGTTCCAGGCTCTCAGTACAAAGAACAAGGAGTTCATTCATCTCAATATA
                    ************************************************************

HsCD00515986        AATGAGTTCATCCATTTGACAATGAACATC---
NM_016452.1         AATGAGTTCATCCATTTGACAATGAACATCTGA
XM_005273010.1      AATGAGTTCATCCATTTGACAATGAACATCTGA
NM_006615.2         AATGAGTTCATCCATTTGACAATGAACATCTGA
                    ******************************   

Pathways

Panther : Huntington disease
WikiPathway : Integrin-mediated cell adhesion

Clone

Cloning Information : 665647
Original Clone ID : ccsbBroadEn_11545

Organism


TAX_ID : 9606
Species Specific ID: 10753

Genome

Chromosome : 1
Map Location : 1q42.11-q42.3
Ensembl : ENSG00000135773

Reagents

Labome : CAPN9-antibody