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BF3900 (Bacteroides fragilis) in pET21_NESG (His-tagged bacterial expression vector)

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Explanation of Terms


Gene: Gene Symbol:  BF3900
Gene Name:  putative exopolyphosphatase-related protein
Sequence             
Original Clone ID: BfR192-21.2
Keyword: None
Species: Bacteroides fragilis
Type: cDNA
Vector Name: pET21_NESG               Format:  FUSION
Source: Northeast Structural Genomics Consortium
Description: None
Comments: None
Mutation/
Discrepancy :
No / No
Publications: PMID: 24971458
Title: Comparing chemistry to outcome: the development of a chemical distance metric, coupled with clustering and hierarchal visualization applied to macromolecular crystallography.
Authors: PSI
Northeast Structural Genomics Consortium
BfCD00627674

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AVAILABLE
No restriction
Special MTA: PSI/NESG

 

Insert sequence: 1029nts         Open reading frame : 1 to 1029

ATGCTGACTAAAGTGATTGCTCAGGCTCATATTGATCATTTTACCAAATGGTTTGAACGG
GCCGACAAAATAGTAATTGTATCTCATGTGTCACCTGATGGAGATGCCATTGGTTCATCA
TTGGGATTGTATCATTTTTTGGATTCTCAAGATAAAATTGTTAATGTGATTGTCCCCAAT
GCTTTTCCCGATTTTTTGAAATGGATGCCGGGTAGTAAGGATATTTTGCTGTATGACCGT
TACCAGGAATTTGCCGACAAGCTGATTATGGAGGCGGATGTCATTTGTTGTCTTGACTTT
AATGCGCTGAAGCGTATTGATGAAATGAGTGATATAGTGGCCGCTTCACCGGGGCGCAAA
ATAATGATAGACCACCATCTTTATCCTGAAGATTTTTGCAGAATCACCATTTCACATCCT
GAGATTTCCTCTACTTCCGAACTGGTGTTTCGATTGATTTGCCGGATGGGATATTTTAGT
GATATCTCCAAAGAAGGAGCCGAATGTATCTATACGGGCATGATGACAGATACCGGAGGG
TTCACTTATAACTCTAATAATCGTGAAATCTATTTCATCATCAGTGAGTTACTCTCAAAA
GGAATCGATAAAGATGATATTTACCGGAAAGTCTACAATACTTATTCTGAAAGCCGTTTG
CGTCTGATGGGATATGTGTTATCGAATATGAAGGTGTATAAAGATTACAATTCCGCCCTT
ATTTCACTGACAAAGGAAGAACAGGGCAAATTTGATTATATCAAAGGGGATAGCGAGGGG
TTTGTCAACATACCTCTGTCTATCAAGAATGTCTGTTTTTCTTGTTTTCTACGTGAGGAC
ACTGAAAAGAAAATGATTAAGATTTCTCTCCGTTCAGTAGGTAAGTTTCCTTGTAATCGG
TTAGCTGCGGAATTTTTCAATGGCGGCGGGCATCTCAATGCGTCCGGAGGGGAATTTTAC
GGTACTATGGAAGAGGCTGTAAAAGTGTTTGAACAAGCATTGGAGAAATATAAACCACTT
TTGAAAGAA


Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: NGS Verification
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
AAGGAGATATACAT

3' Linker Sequence:
CTCGAGCACCACCACCACCACCACTGA

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  ampicillin
Bacterial Selection Condition:  100 ug/mL ampicillin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results: ProteinExpressed: Protein_Confirmed
ProteinPurified: Protein_Purified
SolubleProtein: Protein_Soluble
Find experimental protocols in BfR192
Recommended expression in: E. coli BL21
       DyNA Vector Map

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Vector Name: pET21_NESG

pET21_NESG in advanced viewed

Synonyms: pET21, pET21-modified, pET21Cc, pET21_NESG
Sequencing Primer: Forward:  T7
Reverse:  T7 terminator
Description: Bacterial (E. coli) expression vector with T7 lac promoter, adds C-terminal 6xHis tag; ampicillin resistance; restriction enzyme cloning.
Comments: Modified Novagen pET vector-common MCS
Size (bp): 5415
Parent Vector: None
Empty Vector: EvNO00336944
Properties: bacterial expression, in vitro transcription, multiple cloning site, with tag/fusion/marker
Author Name: Northeast Structural Genomics Consortium
Gaetano T. Montleione
Thomas B. Acton
Publications: PMID: 15808222
Title: Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium

Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
MCS MCS MCS (includes SphI, XbaI, BamHI, EcoRI, XhoI) 157 253
bacterial origin ori pBR322-type bacterial origin of replication 3180 3862
gene fragment ROP ROP 2580 2756
primer T7 forward T7 forward sequencing primer 283 298
primer T7 reverse T7 reverse sequencing primer 66 84
promoter T7 T7 promoter 280 299
repressor binding site lacO lacO regulatory sequence 258 280
repressor protein gene LacI LacI 752 1768
selectable marker AmpR ampicillin resistance gene 3960 4619
ssDNA origin f1 ori f1 origin 5081 5387
tag His C-terminal 6xHis tag 140 157
trxn termination sequence T7 term T7 termination sequence 68 72

 

  • Gene
  • Protein
  • Clone
  • Experimental
  • Organism

Gene

 

Gene Symbol : BF3900
GENEID : 3084981
Locus Tag : BF3900
GI : 53715184
Target GenBank: None

 

Protein

PDB - Structural Annotation : 3DMA
Structural Annotation Wiki : BfR192
UniProt : Q64PD9_BACFR
Protein Structure Viewer

FirstGlance in Jmol
PDB ID

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Clone

Cloning Information : 542842
HIP Master Clone ID : 453162
Original Clone ID : BfR192-21.2

Experimental

Structural Biology Knowledgebase : 3DMA
TargetTrack - Experimental data : BfR192

Organism


TAX_ID : 295405
Species Specific ID: 3084981