Gene:
Gene Symbol:
mfd
Gene Name:
transcription-repair coupling factor
Original Clone ID:
FLH142099.01X
Keyword:
None
Species:
Yersinia pestis KIM10+
Type:
cDNA
Vector Name:
pDONR221
Format:
CLOSED
Source:
HIP
Description:
None
Comments:
None
Mutation / Discrepancy:
No / No
Publications:
None
Authors:
HIP
YpCD00016853
Price:
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AVAILABLE
No restriction
Special MTA: None
Special MTA: None
Insert sequence: 3447nts
Open reading frame: 1 to 3447
ATGTCCCAACAATATCGTTATTCATTGCCTGAACGACGTGGTGATACCCGTCAGTTAGGC
CAGTTGACCGGATCAGCCTGTGCGGTCGAATGTGCCGAAATCATTGAACGCCATGATGGC
CCGGTAATGCTGATTACCCCCGATATGCAAACGGCCTTGCGCTTGCGTGATGAGATCCAG
CAATTCTCGCCACAACCCGTAAGTACCCTCTCCGATTGGGAAACGCTGCCTTACGATAGC
TTCTCGCCACATCAGGATATTATTTCGGCCCGCCTCTCTTGTTTGTATCATCTTCCGGCA
ATGAAACGCGGTGTCATTATTCTCCCAATTAATACCCTGATGCAACGAGTGTGCCCACAC
GAATTTCTACATGGCCACGCTTTGGTGATGAAAAAAGGCCAGCACTTGTCACGGGATAAG
TTACGCGCCCAACTTGAGCAAGCGGGCTATCGCAGTGTTGAACAGGTCATGGAGCACGGT
GAGTTTGCGACGCGAGGTGCGTTGCTGGACTTATACCCAATGGGGAGCAATGAACCGTAT
CGGATTGATTTTTTTGATGATGACATTGATAGCCTGCGGGTATTTGACGTTGATTCGCAA
CGCACACTCGTCGAAGTTGAGCAAATAAACTTACTGCCAGCACATGAGTTCCCAATAGAT
AAAGCGGCGATTGAATTATTCCGTAGCCAATGGCGTGAACAGTTTGAAGTCCGTCGCGAC
AACGAACATATTTATCAGCAAGTGAGTAAAGGCATCTGGCCTGCGGGTATCGAGTATTGG
CAGCCGCTGTTTTTCAGCCAGCAATTACCGACATTGTTTAGCTATCTGCCTGAAAATACC
TTATTGGTAAACACCGGAGATCTGGAAAGCTCGGCTGAACGCTTCTGGCAGGACGTTAAC
CAACGCTTCGAAAGCCGCCGTGTTGACCCAATGCGCCCACTGTTGGCCCCCGAGAGCTTG
TGGCTTCGGGTTGATGCGCTGTTTAATGAATTAAAAGAGTGGCCGCGTGTTCAGCTTAAA
ACAGAGGCGCAGCCCGCCAAAGCCGCGAATACCAATTTATGTTATCAACCGCTGCCCGAT
TTATCCGTTCAGGCACAACAAAAAGCGCCTCTTGATAATCTGCGTCGCTTTATTGAATCG
TTTCATGGCAGTGTGGTGTTCTCGGTTGAAAGTGAAGGCCGCCGTGAAACCTTACAAGAC
CTGCTGGCACGGATAAAACTCAGCCCAACACTGATCACTACGCTGTCTCAGGCGGCTAAC
CCCGGCCATTATCTGATGGTTGGGGCCTCGGAACGTGGCTTCCTCGATACTGACAAACAA
CTGGCGCTGATTTGTGAAAGCGACCTACTCGGTGAGCGTGTCAGCCGTCGCCGGCAAGAT
AACCGGCGGACCATCAACACCGATACGTTGATCCGTAATTTGGCAGAACTCCGCCCCGGC
CAGCCGGTAGTCCATCTGGAACACGGTGTCGGCCGCTATCTGGGACTAACCACCCTTGAA
GCGGGTGGGATAAAGGCTGAATACCTGATATTGACTTACGCCGGTGAAGATAAACTGTAT
GTCCCCGTGTCATCATTGCATCTCATTAGCCGCTATTCAGGGGGTGCGGACGATAACGCC
CCGTTGCATAGGTTAGGCAGCGATGTCTGGAGCCGGGCACGGCAAAAAGCCGCCGAGAAA
GTGCGGGATGTTGCTGCTGAACTGCTGGATATCTATGCCCAGAGGGCGGTTAAATCTGGC
TTTAAATTTAAGCATGACCGTGAGCAATACCAGCTGTTCTGCCAAAGCTTCCCGTTTGAA
ACCACGCCAGATCAAGAGCAGGCGATCAACGCGGTGCTCAGTGATATGTGCCAACCGTTA
GCCATGGACCGCTTGGTTTGTGGTGATGTGGGCTTTGGTAAAACGGAAGTGGCGATGCGG
GCCGCATTTCTGGCCGTTACCAATAATAAACAAGTGGCGGTGTTGGTACCCACCACCCTG
CTGGCTCAACAGCATTTTGATAATTTCCGTGACCGCTTTGCCACTTGGCCGGTACGGATT
GAGATGCTATCCCGTTTTCGCAGTGCCAAAGAGCAGCAAGTCATTCTGGAACAAGCCGCT
GAAGGCAAAATCGATATCCTTATCGGTACCCATAAATTGCTGCAAAGCGATCTGCATTGG
CACGATCTCGGCCTGCTGATTGTGGATGAAGAACACCGCTTCGGCGTGCGTCATAAAGAG
CGGATCAAAGCGATGCGGGCTGATGTTGATATCCTGACCCTGACGGCCACGCCAATCCCA
CGGACACTGAATATGGCGATGAGTGGCATGCGTGACTTATCGATTATCGCCACCCCTCCG
GCACGGCGTCTGGCGGTAAAAACCTTTGTCCGCGAATACGATAGCCTGGTGATCCGTGAA
GCCATATTGCGTGAAATCCTGCGCGGTGGGCAAGTCTATTACCTGTACAACGATGTGGAG
AATATCGAAAAAGTCACGCAGAAACTGGCTGAATTAGTCCCTGAGGCTCGGATAACCATC
GGCCATGGTCAAATGCGTGAACGGGATTTGGAACGGGTGATGAATGATTTCCACCATCAA
CGCTTCAATGTGCTGGTCTGTACCACCATTATTGAAACCGGTATTGATATTCCCAGCGCC
AATACCATTATTATTGAGCGAGCGGATCACTTGGGTCTAGCGCAGTTGCACCAGCTCAGA
GGCCGGGTCGGGCGCTCTCACCATCAGGCTTATGCCTACTTGCTGACCCCCAATCCAAAA
GCCATGAGCACCGATGCGAAGAAACGGCTGGAAGCCATTGCGTCACTGGAAGATCTCGGT
GCAGGTTTTGCATTGGCGACACATGATTTGGAAATCCGTGGTGCCGGGGAGCTATTGGGC
GAGGACCAAAGCGGCCAGATGACCACGATTGGCTTCTCGTTGTATATGGAGCTACTGGAA
AGTGCCGTAGATGCGCTAAAAGAGGGCCGTGAGCCTTCATTAGAAGACCTGACCAGCAAC
CAAACCGAAATAGAAATGCGCATGCCGGTGCTGCTGCCAGAGGATTTCATTTCAGATGTG
AATATCAGGCTGTCGTTCTATAAACGTATCGCCAGTGCGCGCAACGAAACCGAGCTGGAT
GAGTTAAAAGTTGAGCTAATCGATCGCTTTGGCAAGTTACCCGACCCCGCCCGCTATTTA
TTGCATACCGCCGAATTGCGTCAACAAGCCCAGAAACTGGGTATCAAACGTATTGAAGGC
AATGAGCGTGGCGGTTTCATTGAGTTTGGCGAGAACAATAAAGTGGATCCGGTGTATTTG
ATTGGGCTGTTACAACGGCAACCACAGATTTACCGTTTGGAAGGGCCAACCAAATTGAAG
TTGGTGCAAGATTTAAGTGATCGGGCGCAACGGTTGAAATTTATTACGGAGTTACTGGCG
GCATTTGCACAACATCGCATTGCCTAG
Protein sequence predicted based on nucleotide sequence
MSQQYRYSLPERRGDTRQLGQLTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQ QFSPQPVSTLSDWETLPYDSFSPHQDIISARLSCLYHLPAMKRGVIILPINTLMQRVCPH EFLHGHALVMKKGQHLSRDKLRAQLEQAGYRSVEQVMEHGEFATRGALLDLYPMGSNEPY RIDFFDDDIDSLRVFDVDSQRTLVEVEQINLLPAHEFPIDKAAIELFRSQWREQFEVRRD NEHIYQQVSKGIWPAGIEYWQPLFFSQQLPTLFSYLPENTLLVNTGDLESSAERFWQDVN QRFESRRVDPMRPLLAPESLWLRVDALFNELKEWPRVQLKTEAQPAKAANTNLCYQPLPD LSVQAQQKAPLDNLRRFIESFHGSVVFSVESEGRRETLQDLLARIKLSPTLITTLSQAAN PGHYLMVGASERGFLDTDKQLALICESDLLGERVSRRRQDNRRTINTDTLIRNLAELRPG QPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGADDNA PLHRLGSDVWSRARQKAAEKVRDVAAELLDIYAQRAVKSGFKFKHDREQYQLFCQSFPFE TTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNKQVAVLVPTTL LAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAAEGKIDILIGTHKLLQSDLHW HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP ARRLAVKTFVREYDSLVIREAILREILRGGQVYYLYNDVENIEKVTQKLAELVPEARITI GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQLR GRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLG EDQSGQMTTIGFSLYMELLESAVDALKEGREPSLEDLTSNQTEIEMRMPVLLPEDFISDV NIRLSFYKRIASARNETELDELKVELIDRFGKLPDPARYLLHTAELRQQAQKLGIKRIEG NERGGFIEFGENNKVDPVYLIGLLQRQPQIYRLEGPTKLKLVQDLSDRAQRLKFITELLA AFAQHRIA*
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Reference Sequence Annotations:
Start on reference sequence
1
End on reference sequence
3447
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
kanamycin
Bacterial Selection Condition:
50ug/mL kanamycin
Growth Condition:
Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:
Conditions for Gateway-type vectors in recombined (with insert) form and other kanamycin resistant vectors.
Protein Expression Results:
None
Recommended expression in:
Not Applicable
Vector Name:
pDONR221
Synonyms:
''
Description:
Gateway®, donor (entry), recombinational cloning clone, bacterial expression expression with rrnB T2 and rrnB T1 and M13 forward and attP1 and ccdB and CmR and cat_promoter-var002 and attP2 and T7 promoter and M13 reverse and KanR and ori; 50ug/mL of Kanamycin resistance in Pichia;
Comments:
The position of features were determined for the unrecombined (empty) form of the vector, which is described in detail on the Invitrogen website.
Size (bp):
4762
Parent Vector:
None
Properties:
Gateway, bacterial expression, donor (entry), recombinational cloning
Author Name:
Invitrogen
Publications:
None
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
CDS
ccdB
CcdB, a bacterial toxin that poisons DNA gyrase
1197
1502
CDS
CmR
confers resistance to chloramphenicol
1847
2506
CDS
KanR
confers resistance to kanamycin in bacteria or G418 (Geneticin) in eukaryotes
3156
3965
Terminator
rrnB T2
transcription terminator T2 from the E. coli rrnB gene
268
295
Terminator
rrnB T1
transcription terminator T1 from the E. coli rrnB gene
387
473
primer_bind
M13 forward
common sequencing primer, one of multiple similar variants
537
553
primer_bind
M13 reverse
common sequencing primer, one of multiple similar variants
3027
3043
promoter
cat_promoter-var002
promoter of the E. coli cat gene encoding chloramphenicol acetyltransferase
2507
2609
promoter
T7 promoter
promoter for bacteriophage T7 RNA polymerase
3004
3022
protein binding site
attP1
recombination site for the Gateway BP reaction
570
801
protein binding site
attP2
recombination site for the Gateway BP reaction
2754
2985
rep_origin
ori
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
4112
4700
