Gene:
Gene Symbol:
Pcdha5
Gene Name:
protocadherin alpha 5
Original Clone ID:
FLH481617.01X
Keyword:
None
Species:
Mus musculus
Type:
cDNA
Vector Name:
pENTR223.1
Format:
CLOSED
Source:
The ORFeome Collaboration
Description:
None
Comments:
None
Mutation / Discrepancy:
No / No
Publications:
None
Authors:
The ORFeome Collaboration
MmCD00295370
Price:
Login for Pricing
AVAILABLE
No restriction
Special MTA: None
Special MTA: None
Insert sequence: 2805nts
Open reading frame: 35 to 2839
GTACAAAAAAGCAGAAGGGCCGTCAAGGCCCACCATGGTATATTTCCAGCGAGGAAGTCC
GGGATTTCGGCGCCTGCTGATCTCCTTTGTGCTTCTCGCAGCCTGGGAGGCAGGGAGCGG
CCAGCTCCACTACTCCATCCCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCGCATCGC
GCAGGACCTGGGGCTGGAGCTGACGGAGCTGGTGCCCCGCCTGTTCAGAGTGGCGTCCAA
GGACCGCGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCG
GATCGACCGGGAGGAGCTGTGTGGGCGGAGCGCGGAGTGTAGCATCCACCTGGAGGTGAT
CGTGGACAGGCCGCTGCAGGTTTTCCACGTGGAGGTGGAGGTGAAGGACATTAACGACAA
CCCGCCTAAATTCTCACGACCTGAACAAAGATTATTTATTTTAGAGTCAAGAATGCCAGA
CTCGCGGTTTCCGGTAGAGGGCGCATCTGATTTGGATATAGGAGCCAATGCAGCCTTGAG
TTATAAGATAAATCCTAATGAATATTTTGACTTGGATGTTAAAAGAAACGAAGAAGAAAC
AAGCGTTTTACAACTAGTTTTGAAGAAGCCCCTAGATAGAGAAGAAACCCAAGAGCATCG
TTTGTTGCTCATTGCAATTGATGGAGGGAAACCTGAACTAACAGGTACTGTTCAGTTACT
GATTGATGTGTTGGATGCAAATGATAATGCTCCGGAGTTTGATAAATCTATTTATAATGT
TAGATTGTTAGAAAATACACCCAACGGGACATTAGTCATTAAACTCAATGCTTCAGATGC
GGATGAGGGAATTAATAAAGAAATACTGTATTTCTTTAGTAATCTTGTTCTTGACGATGT
AAAATCTAAATTTACGATAGATTCTTCCAGTGGAGAAATAAAAGTTAAGGGCGAACTGGA
TTACGAAGACTGTAAAGTATATGAAATTAATATTGATGCAGTGGACAGAAGCGCATTCCC
ACTAGCAGGACACTGCAAAATTATAGTGAAACTAGTGGATGTAAATGATAACGTGCCTGA
GATGGCCATAACCTCCATTTTTTTGCCTATCAAAGAGGATGCTCCATTGGCGACTGTCAT
CGCTCTGATTAGCGTGTCAGATCGTGACTCAGGCGCCAATGGGCAGGTGACCTGCTCCTT
GACACCCCACATCCCCTTCAAGCTGGTGTCCACTTTCAAGAATTACTATTCGCTTGTACT
GGACAGAGCTCTGGACCGAGAGACTATCGCTAACTACGACGTTGTTGTGACCGCTCGCGA
TGGAGGCTCGCCCTCCTTGTGGGCCACGGCCAGCGTGTCCGTGGAGGTGGCTGACGTGAA
CGACAACGTGCCTGCGTTTGCGCAGCCCGAATACACTGTGTTCGTGAAGGAGAACAACCC
GCCTGGTGCGCACATCTTCACGGTGTCAGCGATGGACGCTGATGCACAGGAGAACGCGCT
GGTGTCCTACTCGCTGGTGGAGCGGAGGGTGGGCGAGCGCTTGCTGTCGAGCTATGTGTC
TGTGCACGCGGAGAGCGGCAAGGTGTTTGCGCTGCAGCCTCTGGACCATGAGGAGCTGGA
GCTGCTGCAGTTCCAGGTGAGCGCGCGGGATGCTGGTGTGCCTGCCCTGGGCAGCAATGT
GACTCTGCAGGTGTTTGTGCTGGATGAGAACGACAACGCACCCACGCTGCTGGGGCCTCA
GGGTAGCGGAGGAACTATTGAGTTGTTGTCCAGGTCAGTGAGTTCTGGCCATGTGGTTGC
GAAGGTGCGTGCAGTGGACGCGGATTCTGGCTACAACGCGTGGCTGTCTTATGAGTTGCA
GCCTGCGACAGGTGCTGTGCGCAGCCCGTTCCGCGTGGGGCTATACACTGGTGAGATCAG
CACAACTCGTGTTCTGGATGAAGCGGACATGCCGCGTCAACGCTTGTTGGTGCTGGTGAA
GGATCACGGCGAGCCACCTCTGACAGCCACGGCCACTTTCCTGGTGTCTCTTGTGGAGAA
CAGCCAGACCCCGAAGGTCTCATCCAGGGTGTTGGTTGGAACCTCTGGTTCAGACTCCAC
GCTGATAGATGTCAACGTGTACCTAATCATCGCCATTTGTGCGGTTTCCAGTCTGTTGGT
GCTCACCCTGCTTCTGTACACAGCGATTCGCTGCTCAGCGACGCCCACTGATGGAGCCTG
TGCTCCAGGAAAGCCAGTGCTGGTGTGCTCCAGCGCGGTAGGGACCTGGTCATACTCGCA
GCAGAGGCGACAGAGGGTGTGCTCTGGAGAAGGTCCACCCAAGACCGACCTCATGGCCTT
CAGTCCCAGCCTACCTCAGGGACCCAGCTCTACAGAGAATCCCCGGCAGCCCAACCCTGA
CTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCACAGCTCTGTGCACCTGGAGGAGGC
TGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGC
AACACCAGAACCTGAGGCAGGAGAGGTGTCCCCTCCGGTGGGCGCCGGTGTCAACAGCAA
CAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCC
AGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAA
CAACCAAATTGACAAAAGCGATTTTATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAA
GAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGAC
GGACAACAGTGACCAGTAGGGCCTCATGGGCCCAGCTTTCTTGTAC
Protein sequence predicted based on nucleotide sequence
MVYFQRGSPGFRRLLISFVLLAAWEAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELTELV PRLFRVASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE VEVKDINDNPPKFSRPEQRLFILESRMPDSRFPVEGASDLDIGANAALSYKINPNEYFDL DVKRNEEETSVLQLVLKKPLDREETQEHRLLLIAIDGGKPELTGTVQLLIDVLDANDNAP EFDKSIYNVRLLENTPNGTLVIKLNASDADEGINKEILYFFSNLVLDDVKSKFTIDSSSG EIKVKGELDYEDCKVYEINIDAVDRSAFPLAGHCKIIVKLVDVNDNVPEMAITSIFLPIK EDAPLATVIALISVSDRDSGANGQVTCSLTPHIPFKLVSTFKNYYSLVLDRALDRETIAN YDVVVTARDGGSPSLWATASVSVEVADVNDNVPAFAQPEYTVFVKENNPPGAHIFTVSAM DADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDA GVPALGSNVTLQVFVLDENDNAPTLLGPQGSGGTIELLSRSVSSGHVVAKVRAVDADSGY NAWLSYELQPATGAVRSPFRVGLYTGEISTTRVLDEADMPRQRLLVLVKDHGEPPLTATA TFLVSLVENSQTPKVSSRVLVGTSGSDSTLIDVNVYLIIAICAVSSLLVLTLLLYTAIRC SATPTDGACAPGKPVLVCSSAVGTWSYSQQRRQRVCSGEGPPKTDLMAFSPSLPQGPSST ENPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSP PVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPANNQIDKSDFITF GKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ*
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Reference Sequence Annotations:
Start on reference sequence
1
End on reference sequence
2805
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
spectinomycin
Bacterial Selection Condition:
100 ug/mL spectinomycin
Growth Condition:
Growth at 37 degrees C in LB supplemented with 100 ug/mL spectinomycin.
Comments:
None
Protein Expression Results:
None
Recommended expression in:
Not Applicable
Vector Name:
pENTR223.1
Synonyms:
pDONR-223.1, pENTR223-star-Sfi
Description:
Gateway type (lambda att-type) recombinational cloning entry (master) vector; spectinomycin resistance; recombinational cloning.
Comments:
Additional information about this vector is available from the commercial website and at the ORFeome website http://orfeomecollaboration.org/vectors.php
Size (bp):
4311
Parent Vector:
None
Properties:
Gateway, donor (entry), recombinational cloning
Author Name:
Invitrogen
Publications:
None
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
MCS
MCS
MCS (Sfi sites flank the cassette present only in no insert form)
1265
1277
bacterial origin
ori
bacterial origin of replication
1
534
negative selection marker
ccdB
ccdB (no insert form only; lost in with insert form)
1312
1617
primer site
M13 F
M13 forward primer for insert sequencing
1113
1129
primer site
T7
T7 Forward primer for insert sequencing
2902
2921
primer site
M13 reverse
M13 reverse primer for insert sequencing
2926
2942
recombination site
attL1
attL1 recombination site
1165
1264
recombination site
attL2
attL2 recombination site
2786
2885
selectable marker
CmR
chlR (no insert form only; lost in with insert form)
1959
2618
selectable marker
SpnR
spectinomycin resistance gene
3154
4164
