Gene:
Gene Symbol:
Pcdhac2
Gene Name:
protocadherin alpha subfamily C, 2
Original Clone ID:
FLH481697.01X
Keyword:
None
Species:
Mus musculus
Type:
cDNA
Vector Name:
pENTR223.1
Format:
CLOSED
Source:
The ORFeome Collaboration
Description:
None
Comments:
None
Mutation / Discrepancy:
No / No
Publications:
None
Authors:
The ORFeome Collaboration
MmCD00295450
Price:
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AVAILABLE
No restriction
Special MTA: None
Special MTA: None
Insert sequence: 3021nts
Open reading frame: 35 to 3055
GTACAAAAAAGCAGAAGGGCCGTCAAGGCCCACCATGGAGCAGGCGGGAGCCAGACCTGG
GGCGACAGAGCATCCGCGACCCCTGCGGCCCTTGCCCTGGCTGCTGCTTCTGTCTTTCCG
ACTGCTGCTGGTGCTGCTGCCAGGCCCAGCGGCCTCCCAGCTACGATACTCCGTGCCGGA
GGAGCAGAGCCCCGGCGCGCTCGTGGGCAACGTGGCCAGAGCCTTGGGGCTAGAACTGCG
GCGCTTGGGACCTGGCTGTCTGCGCATCAACCATTTGGGTGCACCCAGCCCGCGCTACCT
GGAACTGGACTTGACCAATGGAGCGCTCTTCGTCAACGAGCGGATAGATCGCGAGGCGCT
GTGCGAGCAGCGGCCTCGCTGCCTGCTCAGCTTGGAAGTGCTGGCTCACAACCCTGTGGC
AGTGAGCGCGATCGAGGTGGAAATACTGGACATCAATGACAACTCTCCGCGCTTCCCGCG
GCCGGATTATCAGCTTCAGGTAAGCGAATCCGTGGCACCTGGAGCGCGGTTTCACATAGA
GAGCGCACAGGACCCTGACGTCGGTGCCAACTCAGTGCAGACCTACGAGCTCAGCCCCAG
CGAGCACTTTGAGCTGGATCTTAAACCCTTGCAGGAGAATAGCAAGGTGCTGGAGCTCGT
GCTGCGGAAGGGCCTAGACCGGGAGCAGACTGCCTTGCACTACTTGGTTCTCACTGCGGT
GGATGGGGGCATCCCAGCTCGCTCAGGCACAGCTCAGATCGCCGTTCGTGTCCTGGACAC
GAATGACAATTCTCCTGCCTTTGACCAATCCACTTACCGCGTCCAGCTGCGAGAGGATGC
TCCTCCGGGCACATTGGTAGTGAAGTTGAATGCCTCGGACCCGGATGAGGGTTCTAACGG
TGAACTCAGGTACTCCTTGAGCAGCTACACATCAGACCGGGAGAGACAGCTCTTCAGCAT
CGATGTGACTACAGGGGAAGTGAGAGTAAGTGGGACTCTGGATTATGAGGAGTCTTCCTC
CTACCAGATCTATGTGCAAGCTACTGACCGGGGACCGGTACCCATGGCGGGACACTGCAA
GGTGTTGGTGGACATTATAGATGTGAATGACAACGCTCCAGAGGTGGTGCTCACAGACTT
ATACAGCCCAGTGCCTGAGGATGTTGCCCTCAACACTGTTGTGGCCCTTCTCAGTGTGAA
TGACCAAGATTCAGGCTCCAACAGGAAAGTAAGCCTGGGTCTGGAGGCTTCACTGCCCTT
CCGGCTGAATGGCTTTGGAAACTCCTATACCCTGGTGGTGAGTGGCCCATTGGATCGGGA
GCGGGTAGCTGCCTACAACATCACAGTGACAGCTACTGATGGGGGAGTACCACCACTCAC
ATCTCAAAGGACATTGCAGGTTGAGATCTCTGACATAAATGACAATCCACCAAGCTTCCT
GAAGGACTCCTATTCCATCTACATCGAGGAAAACAATTTACCAGGTGTGTTGCTCTGCAC
TGTGCAAGCCACAGACCCAGATCAAAAGGAGAATGCAGAGGTGACCTACTCACTCCTAGA
CAGGGAGATTCAAGGGCTGCCAGTCACCTCCTATGTCTCCATTAACAGTGCCAGCGGCAG
CCTTTATGCTGTCAACTCCTTTGACTATGAGAAATTTCGAGAGTTTTTTGTGACTGTGGA
GGCCCAGGATAAGGGGAGGCCACCACTAAGCAGCACTGTGACCGCCAACGTGTATGTGGT
GGACGTGAATGACCACGCCCCCCATATTCTATACCCTACCTCAACTAATACATCAGCAGC
CATTGAAATGGTGCCACGGACTGCCCCTGCTGGCTACCTGGTCACCAAAGTCATAGCCAT
GGATTCAGACTCTGGGCAGAATGCTTGGCTCTTTTACCATTTAGTCCCAACGTCTGACTC
GGACCTTTTTAAAGTAGAACTTCACACAGGAGAAATTAGGATTACCAGGAAGATAGGAGA
TGAGAGTGGCACCACTTTCAACCTGACCGTGGTGGTCCGTGACAATGGAGAGCCACCTCT
ATCAGCTACCGTGGCCATCACAGTAGCTGTGGTGGACAGGGTTTCTAAAATGCTCCCTGA
CACTCAGAGACATATAAAGAGTCCTCGGACATACTCTGAGATCACACTTTATCTGATAAT
AGCATTAAGCACAGTGTCTTTTATATTCCTTTTGACAATCATTGTTCTGAGCATCATTAA
GTGCTACCGCTACACTGCTTATGGCACGGCATGCTGTGGGGGCTTCTGTGGAGTGAGGGA
GCGCTGCCCTGCAGAGCTGTACAAGCAGGCCAATAACAATATCGATGCCAGGATACCACA
TGGCCTCAAAGTACAGCCTCACTTCATTGAGGTTCGAGGCAATGGCTCCCTCACCAAGAC
CTACTGCTACAAGGCCTGCCTGACAGCAGGCTCAGGGAGTGATACTTTCATGTTTTACAA
CACAGGGGCCCAGACAGGGCCAGGGCCTGGGGGAGCCCAAGCCTCAGTGACTGACAACAG
GCAACTCACCGGCCAAAGTAGGCACAGTACCGGGAACCTGATTATCCTAAAAAATGATGC
TGGCTCTCAAAATGAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAG
AGCAGGCATGCACAGCTCTGTGCACCTGGAGGAGGCTGGCATTCTACGGGCTGGTCCAGG
AGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCTGAGGCAGGAGA
GGTGTCCCCTCCGGTGGGCGCCGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACC
AGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTCATTATCCCAGGATC
TCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAAAGCGATTT
TATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAA
GACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACGGACAACAGTGACCAGTAGGGCCT
CATGGGCCCAGCTTTCTTGTAC
Protein sequence predicted based on nucleotide sequence
MEQAGARPGATEHPRPLRPLPWLLLLSFRLLLVLLPGPAASQLRYSVPEEQSPGALVGNV ARALGLELRRLGPGCLRINHLGAPSPRYLELDLTNGALFVNERIDREALCEQRPRCLLSL EVLAHNPVAVSAIEVEILDINDNSPRFPRPDYQLQVSESVAPGARFHIESAQDPDVGANS VQTYELSPSEHFELDLKPLQENSKVLELVLRKGLDREQTALHYLVLTAVDGGIPARSGTA QIAVRVLDTNDNSPAFDQSTYRVQLREDAPPGTLVVKLNASDPDEGSNGELRYSLSSYTS DRERQLFSIDVTTGEVRVSGTLDYEESSSYQIYVQATDRGPVPMAGHCKVLVDIIDVNDN APEVVLTDLYSPVPEDVALNTVVALLSVNDQDSGSNRKVSLGLEASLPFRLNGFGNSYTL VVSGPLDRERVAAYNITVTATDGGVPPLTSQRTLQVEISDINDNPPSFLKDSYSIYIEEN NLPGVLLCTVQATDPDQKENAEVTYSLLDREIQGLPVTSYVSINSASGSLYAVNSFDYEK FREFFVTVEAQDKGRPPLSSTVTANVYVVDVNDHAPHILYPTSTNTSAAIEMVPRTAPAG YLVTKVIAMDSDSGQNAWLFYHLVPTSDSDLFKVELHTGEIRITRKIGDESGTTFNLTVV VRDNGEPPLSATVAITVAVVDRVSKMLPDTQRHIKSPRTYSEITLYLIIALSTVSFIFLL TIIVLSIIKCYRYTAYGTACCGGFCGVRERCPAELYKQANNNIDARIPHGLKVQPHFIEV RGNGSLTKTYCYKACLTAGSGSDTFMFYNTGAQTGPGPGGAQASVTDNRQLTGQSRHSTG NLIILKNDAGSQNEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSS ATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPA NNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ*
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Reference Sequence Annotations:
Start on reference sequence
1
End on reference sequence
3021
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
spectinomycin
Bacterial Selection Condition:
100 ug/mL spectinomycin
Growth Condition:
Growth at 37 degrees C in LB supplemented with 100 ug/mL spectinomycin.
Comments:
None
Protein Expression Results:
None
Recommended expression in:
Not Applicable
Vector Name:
pENTR223.1
Synonyms:
pDONR-223.1, pENTR223-star-Sfi
Description:
Gateway type (lambda att-type) recombinational cloning entry (master) vector; spectinomycin resistance; recombinational cloning.
Comments:
Additional information about this vector is available from the commercial website and at the ORFeome website http://orfeomecollaboration.org/vectors.php
Size (bp):
4311
Parent Vector:
None
Properties:
Gateway, donor (entry), recombinational cloning
Author Name:
Invitrogen
Publications:
None
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
MCS
MCS
MCS (Sfi sites flank the cassette present only in no insert form)
1265
1277
bacterial origin
ori
bacterial origin of replication
1
534
negative selection marker
ccdB
ccdB (no insert form only; lost in with insert form)
1312
1617
primer site
M13 F
M13 forward primer for insert sequencing
1113
1129
primer site
T7
T7 Forward primer for insert sequencing
2902
2921
primer site
M13 reverse
M13 reverse primer for insert sequencing
2926
2942
recombination site
attL1
attL1 recombination site
1165
1264
recombination site
attL2
attL2 recombination site
2786
2885
selectable marker
CmR
chlR (no insert form only; lost in with insert form)
1959
2618
selectable marker
SpnR
spectinomycin resistance gene
3154
4164
