Gene:
Gene Symbol:
SPO1594
Gene Name:
mandelate racemase/muconate lactonizing enzyme, putative
Original Clone ID:
9296b3BSt5p1
Keyword:
full-length cds 2-368 of 368 aa
Species:
Ruegeria pomeroyi
Type:
cDNA
Vector Name:
pSGX4
Format:
CLOSED
Source:
New York SGX Research Center for Structural Genomics
Description:
None
Comments:
"N-terminal 6-His and Smt3, cleavable, TOPO"
Mutation / Discrepancy:
No / Yes
Publications:
None
Authors:
PSI
New York SGX Research Center for Structural Genomics
New York SGX Research Center for Structural Genomics
RpCD00312619
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AVAILABLE
No restriction
Special MTA: PSI/Smt3/SUMO
Special MTA: PSI/Smt3/SUMO
Insert sequence: 1104nts
Open reading frame: 51 to 1154
AGGATAACGATATTATTGAGGCTCACAGAGAACAGATTGGTGGATCCCTTAAAATTACCC
GTATCACCGTGTATCAGGTTGATCTGCCGTTAGAACATCCATACTGGTTGAGCGGTGGCA
GACTTAAGTTTGAGCTCCTGGACGCGACTCTGGTCAAATTAGAAACAGATGCCGGGATAA
CCGGATGGGGCGAGGGTACGCCTTGGGGGCACACTTATGTACCCGCACATGGACCGGGCA
TTCGGGCTGGTATCGAAACAATGGCGCCATTCGTGTTGGGCCTTGACCCTAGACGACTGC
TCGATGTTGAACGTGCCATGGACATTGCACTGCCGGGTCACTTATACGCTAAATCTCCCA
TCGATATGGCGTGCTGGGATATAGCCGGGCAAGCAGCTGGACTGCCGATTGCGGACTTGA
TGGGCGGTGGCAGTCGCACCCCACGTCCTATCGCCTCATCCGTCGGTGCAAAGTCGGTAG
AGGAAACTAGAGCTGTGATTGATCGGTATCGTCAGCGCGGGTACGTTGCGCATAGCGTCA
AAATAGGAGGCGACGTGGAGAGAGATATCGCCCGCATTCGTGACGTAGAAGATATCCGCA
AACCGGGTGAAATTGTTCTTTATGATGTGAATCGGGGGTGGACCCGTCAACAGGCACTGC
GCGTCATGCGTGCGACTGAGGACCTCCACGTTATGTTTGAACAGCCCGGCGAGACATTAG
ATGACATAGCTGCCATCCGCCCGCTGCATTCTGCACCAGTAAGTGTGGATGAATGTTTGG
TCACGCTTCAAGATGCGGCTAGAGTTGCCCGAGACGGTCTGGCAGAAGTGTTCGGAATTA
AGTTAAACCGGGTAGGCGGTCTGACACGTGCGGCTCGCATGCGTGATATAGCCCTCGCAC
ACGGGATCGACATGTTTGTCATGGCGACTGGCGGTTCAGTTCTGGCCGATGCAGAGGCGT
TGCATCTTGCTGCCACAATTCCTGACCACGCGTGCCATGCTGTGTGGGCATGTCAGGATA
TGCTGACCGTAGATATTGCCGGAGGTCGTGGTCCGCGGAATATCGACGGGCACTTACATC
TGCCAGAAACGCCGGGACTCGGCGTTCATCCCGATGAGGACGCGTTGGGTGATCCTGTTG
CTGTTTATTCTTAAGGGTAACTCGAGCACCACCACCACCACCACTGAGATCCGGCTGTAA
CAAGC
Protein sequence predicted based on nucleotide sequence
KITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAH GPGIRAGIETMAPFVLGLDPRRLLDVERAMDIALPGHLYAKSPIDMACWDIAGQAAGLPI ADLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVE DIRKPGEIVLYDVNRGWTRQQALRVMRATEDLHVMFEQPGETLDDIAAIRPLHSAPVSVD ECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALAHGIDMFVMATGGSVLAD AEALHLAATIPDHACHAVWACQDMLTVDIAGGRGPRNIDGHLHLPETPGLGVHPDEDALG DPVAVYS*
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Mutations:
None
Discrepancy:
c66t,t69c,c816a,c996t,c999t
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
kanamycin
Bacterial Selection Condition:
50ug/mL kanamycin
Growth Condition:
Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:
Conditions for Gateway-type vectors in recombined (with insert) form and other kanamycin resistant vectors.
Protein Expression Results:
ProteinPurified: Not_Tested
ProteinExpressed: Protein_Confirmed
SolubleProtein: Tested_Not_Soluble
Find experimental protocols in NYSGXRC-9296b
Recommended expression in:
Not Applicable
Vector Name:
pSGX4
Synonyms:
pSGX-4, pSGX4_BS
Sequencing Primer:
Forward:
T7
Reverse:
T7 terminator
Description:
Bacterial (E. coli) expression vector with T7 promotor, adds N-terminal 6xHis and smt-3 tags, cleavage site; kanamycin resistance; TOPO cloning.
Comments:
Modified from pET26b from Novagen. N-terminal 6xHis-tag followed by smt3 fusion protein. Smt3 fusion cloned into NheI and BamHI sites. TOPO adaptation at BamHI and XhoI sites.
Size (bp):
5611
Parent Vector:
None
Properties:
TOPO Cloning, bacterial expression, in vitro transcription, with tag/fusion/marker
Author Name:
New York SGX Research Center for Structural Genomics
Publications:
None
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
TOPO recognition site
TOPO
TOPO cloning site
5435
5444
bacterial origin
ColE
ColE1 bacterial origin of replication
1421
2103
gene fragment
ROP
ROP
2527
2703
promoter
T7
T7 promoter
4984
5003
protease cleavage site
ULP site
ULP cleavage site (recognizes the tertiary structure of SUMO)
5140
5140
repressor protein gene
LacI
lacI cds
3515
4351
ribosome binding site
RBS
ribosome binding site (RBS)
5062
5068
selectable marker
KanR
kanamycin resistance gene
563
1375
tag
Smt3
Smt3 tag
5140
5424
tag
His
6xHis tag
5083
5100
trxn regulatory element
lac operator
lac operator
5003
5025
trxn termination sequence
T7 term
T7 termination sequence
5539
5585
