Gene:
Gene Symbol:
SO_2862
Gene Name:
cyclic di-GMP hydrolase
Original Clone ID:
48102
Keyword:
full-length cds
Species:
Shewanella oneidensis MR-1
Type:
cDNA
Vector Name:
pSpeedET
Format:
CLOSED
Source:
Joint Center for Structural Genomics
Description:
None
Comments:
None
Mutation / Discrepancy:
No / No
Publications:
None
Authors:
PSI
Joint Center for Structural Genomics
Joint Center for Structural Genomics
SoCD00333005
Price:
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AVAILABLE
No restriction
Special MTA: PSI
Special MTA: PSI
Insert sequence: 1206nts
Open reading frame: 1 to 1206
ATGGCAAAAGTAGCTCATAAAAAACTATTACTCTCCGAACTTCAGCCTGGTATGCGGGTT
AAGTTGCCTTTGTCATGGACGAATCACCCTTTTCTGTTTAACCGAGTGGATATCAATAGT
GCGGCACAAATTGAGATGATCCGTGGACTCGGTGTGCCCTTTGTTTATCTTATTTCTGGT
AGTAGTGATGATGCCGAAGCGGTAGATGAAGAGGAGGAAATTGAAGAGATTGATGAAATG
CCACCTGAGCGGGATCTCAAAGCCGATACCCGTAAATCGATGCGACTAAGCCAAAAACGA
TTTTTAGAGAGTGTGAATCAATGCCGCAATGTTTTTGGCAAGATAGTGAGCGATCCTGAG
GGGGCATATCGTCTGTCAGCAGCTCTAGTTGAAGATTTACTTAGTCATTTACAAGAGGTG
CAAAAGCCTTTCTTAACCCTAGTAGGGATGGACGAAAAGGATGTGAGTGTGACTCAGCAT
GGCGTCTCTGTGGCGGTATTAGCCATGATGATAGGTCATGCTCTTGATTTACCTGCGCGC
GAGCTGCGTGATATTGCCCTTGGCAGTTTATTCCATGATATTGGTAAACTAAAAGTCCCC
GATGTGATCCGTCGAAAGCGCAGTGCCTTAACTCCCCATGAAGCCAATTACCTACAGATG
CACCCTAATTTTGGCTATGACATGCTTAATCGCTCGGGACTTTTCCCTAAAGAAGTGCTG
AATATCGTGTTACATCACCATGAGTTTGTTGATGGTTCGGGTTTTCCTGACGGATTAACG
GGCCATAAAATCCCTATGGTGACTCAGATTGTTAGCTTAGCGAATGATTACGACCAACAA
CTCAGTGGCCAGCAAGCGACGTCGCCTCAGGTTGCGCTCGGTTATTTATTTAAAAATAGA
GCCAGTAAGCATTCGGAATCGTTAATTTCTGTTTTAGTCAAAATATTAGGTATTTATCCC
CCTGGAACCATAGTCAAACTCTCGGATGATAATGTCGCTAAAGTGATTATGACGACCAAA
GAGGTAAGCCAGCCACAGGTATGGGCCTGCAAAGAAGATGGCAGCGAAGCGTCGCTCCGC
TTTTTAAGTGACGAGGGCGTGACAGTACAAAAGTCCTTGCGAGTCGAGGATTTAACTGAG
GGCGCAAAGCGTACATTGCAGGTCGATAAGGGGATTAGTTTTTATTTTAGTTCGTTACAA
GCTTAA
Protein sequence predicted based on nucleotide sequence
MAKVAHKKLLLSELQPGMRVKLPLSWTNHPFLFNRVDINSAAQIEMIRGLGVPFVYLISG SSDDAEAVDEEEEIEEIDEMPPERDLKADTRKSMRLSQKRFLESVNQCRNVFGKIVSDPE GAYRLSAALVEDLLSHLQEVQKPFLTLVGMDEKDVSVTQHGVSVAVLAMMIGHALDLPAR ELRDIALGSLFHDIGKLKVPDVIRRKRSALTPHEANYLQMHPNFGYDMLNRSGLFPKEVL NIVLHHHEFVDGSGFPDGLTGHKIPMVTQIVSLANDYDQQLSGQQATSPQVALGYLFKNR ASKHSESLISVLVKILGIYPPGTIVKLSDDNVAKVIMTTKEVSQPQVWACKEDGSEASLR FLSDEGVTVQKSLRVEDLTEGAKRTLQVDKGISFYFSSLQA*
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
kanamycin
Bacterial Selection Condition:
50ug/mL kanamycin
Growth Condition:
Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:
Conditions for Gateway-type vectors in recombined (with insert) form and other kanamycin resistant vectors.
Protein Expression Results:
ProteinPurified: Not_Applicable
ProteinExpressed: Protein_Confirmed
SolubleProtein: Protein_Soluble
Find experimental protocols in 394314
Recommended expression in:
Not Applicable
Vector Name:
pSpeedET
Synonyms:
pSpeed-ET
Sequencing Primer:
Forward:
pBAD forward
Reverse:
alt_bad_rev
Description:
Bacterial expression vector, arabinose or T7 induced expression, adds N-terminal MGSDKIHHHHHHENLYFQG tag; kanamycin resistance; PIPE cloning.
Comments:
If this vector contains an insert, the ccdB death cassette will not be present.
Size (bp):
5464
Parent Vector:
None
Properties:
PIPE cloning, bacterial expression, in vitro transcription, inducible expression, with tag/fusion/marker
Author Name:
Joint Center for Structural Genomics
Publications:
PMID:
18004753
Title: Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts.
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
bacterial origin
ori
ColE1-type origin of replication
3306
3988
inducible trxn activator protein gene
araC
araC coding sequence
4563
5438
negative selection marker
ccdB
ccdB death cassette gene (lost in with-insert form)
1596
1805
promoter
T7
T7 promoter
290
310
promoter
araC
araC promoter
256
285
protease cleavage site
TEV
TEV protease cleavage site
382
402
selectable marker
CmR
chloramphenicol resistance gene (CmR) (lost in with-insert form)
502
1158
selectable marker
KanR
kanamycin resistance gene
2396
3208
tag
His
N-terminal 6xHis tag
364
381
trxn regulatory element
arabinose O1 operator
arabinose O1 operator
161
182
trxn regulatory element
arabinose O2 operator
arabinose O2 operator
5
23
trxn termination sequence
rrnB
rrnB T2 transcription terminator
2258
2284
