Gene:
Gene Symbol:
CPF_0285
Gene Name:
endo-beta-N-acetylglucosaminidase
Original Clone ID:
BGH85_B02b2
Keyword:
partial CDS
Species:
Clostridium perfringens ATCC 13124
Type:
cDNA
Vector Name:
pDONR221
Format:
CLOSED
Source:
Glyco-enzyme clone collection
Description:
All clones in the PSI Materials Repository related to human and bacterial glycosylation enzymes (Glyco-enzyme clone collection) were generated through the support of NIH grant RR005351. All users of these clones are requested to cite this grant source on all publications employing these resources
Comments:
for N-term fusion with a TEV cleavage site (no start codon)
Mutation / Discrepancy:
No / No
Publications:
None
Authors:
University of Georgia
Center for Personalized Diagnostics
Arizona State University
Kelley Moremen
Center for Personalized Diagnostics
Arizona State University
Kelley Moremen
CpCD00405629
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AVAILABLE
No restriction
Special MTA: SPTA
Special MTA: SPTA
Insert sequence: 2025nts
Open reading frame: 1 to 2025
ACACCTAAACAAGATACAAGTGTTGTAAATTATGTGAAAACTCAAGAAGAAACTTCAAAC
TCAATTCAGAATCAACCAATCTCATCTTATTGGTATCCAGAAGATTTATTAAAATGGAGT
GCTAACAATGATAAAGATGCAAAATTTAATAAAAGCACAGTTCCATTAGCAAAAAGAGTC
GAAAAGGATAAACTTGATACTATTAATGACACTCAAAATAAAGATGTTAAAGTTGTAGCA
ATTTCAATAATGAATGCTAATACTAGTGGCAATCCATCACAAGGTTCAAATAAATTTAGT
GCTAATACATTCTCTTATTGGCAATACATAGATAAATTAGTTTACTGGGGTGGATCAGCT
GGAGAAGGATTAATAGTTCCTCCAAGTCCAGATGTTACTGACTCAGCACACAGAAATGGG
GTTCCTGTTTTAGGTACTGTATTCTTCCCTATGACAGCTCATGGTGGAAAAATGGAATGG
TTAAATAAATTCCTTGAAAAAGATTCTAATGGAAACTTCCCTATAGTAGATAAGTTAATT
GAAGTTGCAGAAAACTATGGCTTTGATGGTTGGTTCATAAATCAAGAAACAGAAGGAACT
GAACAAGAACCTTTAACGCCTGAACATGCTAAGCTTATGCAAGAATTAATAAAGCAATTT
AAAGCTAAGTCTAATGGAAAATTTGAAATTATGTGGTATGATTCCATGACAAAAGATGGG
GATATGGATTGGCAAAATGCTTTAACTGATAAAAATGAATATTTCTTATTAGATGGAGAT
AAAAACAAAGTTGCTGATAGTATGTTCTTAAATTTCTGGTGGACATATAATAGTTTAAAA
GATAAAGATTTATTAAGAGTATCTAATGAAAAAGCTAAAGAAATAGGAATAAACCCTTAT
GACTTATATGCTGGAATAGATGTTCAAGCAAATGGATATAAAACTCCTCTTAGATGGGCT
CATTATCAAAGAGATGACCAAGCTCCATTTACTTCATTAGGTTTATATTGTCCAAGCTGG
ACTTATTTTGATGCTAAAACTCCAGAACAATTTCAAGAAAACGAAAGTAGATTATGGGTT
AATGAACATGGTGATCCATCAAAGGCAACTAATGCTCAAGGAGTTGATTGGAGAGGAATT
TCAACATACTCTGTTGAAAAAAGTGCTGTAACTAGCCTTCCATTTACAACTAACTTTAAT
ATGGGTAATGGATATGATTTTTATGTTGATGGTAATAAAGTATCTACTCAAGATTGGAAT
AATAGAAGTTTAAATGATATAATGCCAACTTACAGATGGGTTATTTCAAATGAAGAAAAT
AATAATGTAAAAGCTGACATAGATTATACTAATGCTTACTATGGTGGTAACTCAATTAAA
CTTTCTGGTTACCTAGCTGAAGGAAAAGCTTCTACAATAAAACTTTATAGTTCTGATTTG
ACTTTACCTGAAGGTGTACAATTCACTACTACTGCTAAGGCTAATGGAAATACTGTAGAT
ATGGATTTAGTTCTTACATTCCATGATGGTACAGAAACTACTATTTCTGCTGATAAGAAA
CTTGGTACTGATTGGACTAAACTTACTTATGATGTTTCACCATATGTAGGAAAATCAATT
AAAACTATTTCTTATAAACTTTCAAGCCCAGTATGTGTTGATAACTTCTCTGCAAACTTA
GGTAATATAACAATAGAAATTCCTAACTCAAGTTCAAAGGTAAATATATCTAATTCTAAA
TTAAATGATGTTGACTTTAAAGATGGAATATATGCAGGAGCTAGACTTTCATGGAGTCCT
GAAGGAAATTCTTCTGATGTACATCATTATGAAATTTACAGAGTTATGAATGATGGAACT
AAAGTTTTACTAGGTGCAACTCCTAATACAAGTTATTATGTTAGTGATTTAAGAAGAAAT
GATAAAGAAACAAATACTAATTTTGAGGTAATTGCTGTTAACAAAAACTATAACAGAGGA
AATAGTCAAAGTATAAATATGGAATGGCCTGCTTACCCTGCTTAG
Protein sequence predicted based on nucleotide sequence
TPKQDTSVVNYVKTQEETSNSIQNQPISSYWYPEDLLKWSANNDKDAKFNKSTVPLAKRV EKDKLDTINDTQNKDVKVVAISIMNANTSGNPSQGSNKFSANTFSYWQYIDKLVYWGGSA GEGLIVPPSPDVTDSAHRNGVPVLGTVFFPMTAHGGKMEWLNKFLEKDSNGNFPIVDKLI EVAENYGFDGWFINQETEGTEQEPLTPEHAKLMQELIKQFKAKSNGKFEIMWYDSMTKDG DMDWQNALTDKNEYFLLDGDKNKVADSMFLNFWWTYNSLKDKDLLRVSNEKAKEIGINPY DLYAGIDVQANGYKTPLRWAHYQRDDQAPFTSLGLYCPSWTYFDAKTPEQFQENESRLWV NEHGDPSKATNAQGVDWRGISTYSVEKSAVTSLPFTTNFNMGNGYDFYVDGNKVSTQDWN NRSLNDIMPTYRWVISNEENNNVKADIDYTNAYYGGNSIKLSGYLAEGKASTIKLYSSDL TLPEGVQFTTTAKANGNTVDMDLVLTFHDGTETTISADKKLGTDWTKLTYDVSPYVGKSI KTISYKLSSPVCVDNFSANLGNITIEIPNSSSKVNISNSKLNDVDFKDGIYAGARLSWSP EGNSSDVHHYEIYRVMNDGTKVLLGATPNTSYYVSDLRRNDKETNTNFEVIAVNKNYNRG NSQSINMEWPAYPA*
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
kanamycin
Bacterial Selection Condition:
50ug/mL kanamycin
Growth Condition:
Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:
Conditions for Gateway-type vectors in recombined (with insert) form and other kanamycin resistant vectors.
Protein Expression Results:
None
Recommended expression in:
Not Applicable
Vector Name:
pDONR221
Synonyms:
''
Description:
Gateway®, donor (entry), recombinational cloning clone, bacterial expression expression with rrnB T2 and rrnB T1 and M13 forward and attP1 and ccdB and CmR and cat_promoter-var002 and attP2 and T7 promoter and M13 reverse and KanR and ori; 50ug/mL of Kanamycin resistance in Pichia;
Comments:
The position of features were determined for the unrecombined (empty) form of the vector, which is described in detail on the Invitrogen website.
Size (bp):
4762
Parent Vector:
None
Properties:
Gateway, bacterial expression, donor (entry), recombinational cloning
Author Name:
Invitrogen
Publications:
None
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
CDS
ccdB
CcdB, a bacterial toxin that poisons DNA gyrase
1197
1502
CDS
CmR
confers resistance to chloramphenicol
1847
2506
CDS
KanR
confers resistance to kanamycin in bacteria or G418 (Geneticin) in eukaryotes
3156
3965
Terminator
rrnB T2
transcription terminator T2 from the E. coli rrnB gene
268
295
Terminator
rrnB T1
transcription terminator T1 from the E. coli rrnB gene
387
473
primer_bind
M13 forward
common sequencing primer, one of multiple similar variants
537
553
primer_bind
M13 reverse
common sequencing primer, one of multiple similar variants
3027
3043
promoter
cat_promoter-var002
promoter of the E. coli cat gene encoding chloramphenicol acetyltransferase
2507
2609
promoter
T7 promoter
promoter for bacteriophage T7 RNA polymerase
3004
3022
protein binding site
attP1
recombination site for the Gateway BP reaction
570
801
protein binding site
attP2
recombination site for the Gateway BP reaction
2754
2985
rep_origin
ori
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
4112
4700
