Gene:
Gene Symbol:
UBP6
Gene Name:
ubiquitin carboxyl-terminal hydrolase 6
Original Clone ID:
5444.1.18_GO.1505
Keyword:
full-length cds (mutant)
Species:
Arabidopsis thaliana Columbia
Type:
cDNA
Vector Name:
pVP13
Format:
CLOSED
Source:
Center for Eukaryotic Structural Genomics
Description:
None
Comments:
None
Mutation / Discrepancy:
No / No
Publications:
None
Authors:
University of Wisconsin Madison
PSI
Center for Eukaryotic Structural Genomics
PSI
Center for Eukaryotic Structural Genomics
AtCD00422756
Price:
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AVAILABLE
No restriction
Special MTA: PSI
Special MTA: PSI
Insert sequence: 1467nts
Open reading frame: 51 to 1517
GGATCGACGAAAACCTGTACCTCACAAGTTTGTACAAAAAAGCAGGCTCCGAAAACCTGT
ACTTCCAGTCCCCTACAGTAAGCGTGAAGTGGCAAAAGAAAGTGTTGGATGGTATCGAGA
TTGACGTTAGTCTGCCTCCTTATGTTTTCAAGGCTCAGTTGTATGATTTGACTGGAGTTC
CACCAGAACGCCAAAAGATCATGGTCAAAGGTGGTCTCTTAAAGGATGATGGAGATTGGG
CTGCTATTGGTGTGAAAGATGGTCAAAAATTGATGATGATGGGAACTGCTGATGAGATAG
TGAAAGCTCCTGAGAAGGCCATTGTTTTTGCAGAGGATCTACCTGAAGAAGCGCTAGCCA
CTAATCTGGGTTACAGTGCTGGCCTTGTCAATCTTGGCAACACGTGTTACATGAACTCCA
CGGTGCAGTGCTTAAAATCTGTCCCAGAGTTGAAATCTGCATTATCCAATTACTCACTTG
CTGCCCGAAGCAATGATGTTGACCAGACTTCTCACATGCTCACAGTTGCCACACGTGAGT
TATTTGGTGAGCTTGATAGAAGTGTCAATGCTGTTTCGCCTTCACAGTTCTGGATGGTAT
TACGAAAAAAGTATCCTCAGTTTAGTCAGTTGCAGAATGGAATGCACATGCAGCAGGATG
CTGAAGAATGTTGGACACAACTGTTATACACCCTTTCTCAGTCCCTAAAAGCACCAACTT
CCAGCGAAGGTGCTGATGCTGTGAAAGCTCTATTTGGTGTCAATCTCCAGAGCAGGTTGC
ATTGTCAAGAAAGTGGCGAAGAAAGCTCAGAGACAGAATCTGTATATTCTCTAAAATGTC
ATATATCACATGAAGTGAACCACTTGCATGAAGGATTAAAACATGGACTGAAAGGGGAAC
TTGAAAAAACATCTCCTGCTCTTGGCCGTACTGCACTCTACGTCAAGGAGTCACTTATAG
ATTCCTTGCCAAGGTACTTGACTGTTCAGTTCGTGCGGTTTTTCTGGAAAAGGGAGAGTA
ATCAGAAAGCAAAGATCCTCAGGAAAGTGGATTACCCGCTGGTGTTGGATATATTTGACC
TTTGCTCTGAGGATCTTCGGAAGAAACTGGAAGCTCCTCGCCAGAAACTTAGAGAGGAGG
AAGGTAAAAAGCTTGGTCTTCAAACTAGTGCTAAGAGTGGCTCAAAGGACAGTGATGTGA
AAATGACTGATGCAGAGGCGTCTGCAAATGGAAGTGGAGAATCATCCACAGTAAACCCAC
AGGAAGGTACTTCTTCTGAGAAGGAAACTCACATGACTGGAATCTATGACTTGGTCGCTG
TGTTGACCCACAAGGGCAGGAGTGCAGACTCTGGTCATTATGTTGCATGGGTCAAGCAAG
AGAGTGGCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAGACA
TCACAAAGCTATCTGGAGGAGGTGATTGGCATATGGCGTACATCACAATGTACAAAGCCC
GCTTCGTCTCCATGTAATAGGACCCAGCTTTCTTGTAC
Protein sequence predicted based on nucleotide sequence
ENLYFQSPTVSVKWQKKVLDGIEIDVSLPPYVFKAQLYDLTGVPPERQKIMVKGGLLKDD GDWAAIGVKDGQKLMMMGTADEIVKAPEKAIVFAEDLPEEALATNLGYSAGLVNLGNTCY MNSTVQCLKSVPELKSALSNYSLAARSNDVDQTSHMLTVATRELFGELDRSVNAVSPSQF WMVLRKKYPQFSQLQNGMHMQQDAEECWTQLLYTLSQSLKAPTSSEGADAVKALFGVNLQ SRLHCQESGEESSETESVYSLKCHISHEVNHLHEGLKHGLKGELEKTSPALGRTALYVKE SLIDSLPRYLTVQFVRFFWKRESNQKAKILRKVDYPLVLDIFDLCSEDLRKKLEAPRQKL REEEGKKLGLQTSAKSGSKDSDVKMTDAEASANGSGESSTVNPQEGTSSEKETHMTGIYD LVAVLTHKGRSADSGHYVAWVKQESGKWIQYDDDNPSMQREEDITKLSGGGDWHMAYITM YKARFVSM*
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
ampicillin
Bacterial Selection Condition:
100 ug/mL ampicillin
Growth Condition:
Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:
Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results:
ProteinPurified: Not_Tested
ProteinExpressed: Protein_Confirmed
SolubleProtein: Protein_Soluble
Find experimental protocols in GO.1505
Recommended expression in:
Not Applicable
Vector Name:
pVP13
Synonyms:
''
Sequencing Primer:
Forward:
MBP Forward
Reverse:
pQE Reverse
Description:
Bacterial (E. coli) expression, adds N-terminal S-tag, 6xHis and MBP, adds TEV site on 5p end of insert; ampicillin resistance in bacteria; recombinational cloning; Gateway cloning into this vector will remove the Gateway ccdB death casette.
Comments:
TEV protease cleavage site is "partial" and not functional. The TEV cleavage site must be added to the insert by PCR, which allows amino acids encoded by the attB1 site to be cut off after protein expression. Gateway cloning into this vector will remove the Gateway cassette
Size (bp):
7675
Parent Vector:
None
Properties:
Gateway, acceptor (destination), bacterial expression, recombinational cloning, with tag/fusion/marker
Author Name:
Center for Eukaryotic Structural Genomics
Publications:
PMID:
15750721
Title: Results from high-throughput DNA cloning of Arabidopsis thaliana target genes using site-specific recombination
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
bacterial origin
ori
ColE1-type bacterial origin of replication
6516
5834
negative selection marker
ccdB
ccdB death cassette gene (lost in with-insert form)
2688
2897
promoter
T5
T5 promoter
7
87
recombination site
AttR1
AttR1 recombination site
1361
1485
recombination site
AttR2
AttR2 recombination site
3065
2941
repressor binding site
LacI
LacI coding sequence
4177
5256
selectable marker
CmR
chloramphenicol resistance gene (CmR) (lost in with-insert form)
1594
2250
selectable marker
AmpR
ampicillin resistance gene
7273
6614
tag
S-tag
N-terminal S-tag
116
152
tag
MBP
N-terminal MBP tag
193
1291
tag
His
N-terminal 6xHis tag
173
190
