ZFYVE16 (Homo sapiens) in pLX304

Explanation of Terms

Gene:
Gene Symbol:  ZFYVE16
Gene Name:  zinc finger, FYVE domain containing 16
Original Clone ID:
ccsbBroad304_14026
Keyword:
None
Species:
Homo sapiens
Type:
cDNA
Vector Name:
pLX304
Format: 
FUSION
Source:
The ORFeome Collaboration
Description:
None
Comments:
None
Mutation / Discrepancy:
No / Yes
Publications:
None
Authors:
Harvard Medical School
Dana-Farber Cancer Institute
Broad Institute of Harvard and Massachusetts Institute of Technology (MIT)
David E Hill
David E Root
The ORFeome Collaboration
HsCD00438820
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AVAILABLE
No restriction
Special MTA: None
Insert sequence: 3616nts
Open reading frame: 1 to 3616

ATGGACAGTTATTTTAAAGCAGCTGTCAGTGACTTGGACAAACTCCTTGATGATTTTGAA
CAGAACCCAGATGAACAAGATTATCTCCAAGATGTACAAAATGCATATGATTCTAACCAC
TGCTCAGTTTCTTCAGAGTTGGCTTCCTCACAGCGAACTTCATTGCTCCCAAAAGACCAA
GAGTGCGTTAATAGTTGTGCCTCATCAGAAACAAGCTATGGAACAAATGAGAGTTCCCTG
AATGAAAAAACACTCAAGGGACTTACTTCTATACAAAATGAAAAAAATGTAACAGGACTT
GATCTTCTTTCTTCTGTGGATGGTGGTACTTCAGATGAAATCCAGCCGTTATATATGGGA
CGATGTAGTAAACCTATCTGTGATCTGATAAGTGACATGGGTAACTTAGTTCATGCAACC
AATAGTGAAGAAGATATTAAAAAATTATTGCCAGATGATTTTAAGTCTAATGCAGATTCC
TTGATTGGATTGGATTTATCTTCAGTGTCAGATACTCCCTGTGTTTCTTCAACAGACCAT
GATAGTGATACTGTCAGAGAACAACAGAATGATACCAGTTCTGAATTACAAAATAGAGAA
ATCGGAGGAATCAAAGAATTGGGTATAAAAGTAGATACAACACTTTCAGATTCCTATAAT
TACAGTGGAACAGAAAATTTAAAAGATAAAAAGATCTTTAATCAGTTAGAATCAATTGTT
GATTTTAACATGTCATCTGCTTTGACTCGACAAAGTTCCAAAATGTTTCATGCCAAAGAC
AAGCTACAACACAAGAGCCAGCCATGTGGATTACTAAAAGATGTTGGCTTAGTAAAAGAG
GAAGTAGATGTGGCAGTCATAACTGCCGCAGAATGTTTAAAAGAAGAGGGCAAGACAAGT
GCTTTGACCTGCAGCCTTCCGAAAAATGAAGATTTATGCTTAAATGATTCAAATTCAAGA
GATGAAAATTTCAAATTACCTGACTTTTCCTTTCAGGAAGATAAGACTGTTATAAAACAA
TCTGCACAAGAAGACTCAAAAAGTTTAGACCTTAAGGATAATGATGTAATCCAAGATTCC
TCTTCAGCTTTACATGTTTCCGGTAAAGATGTGCCGTCCTCATTGTCCTGTCTTCCTGCG
TCTGGGTCTATGTGTGGATCATTAATTGAAAGTAAAGCACGGGGTGATTTTTTACCTCAG
CATGAACATAAAGATAATATACAAGATGCAGTGACTATACATGAAGAAATACAGAACAGT
GTTGTTCTAGGTGGGGAACCATTCAAAGAGAATGATCTTTTGAAACAGGAAAAATGTAAA
AGCATACTCCTTCAGTCATTAATTGAAGGGATGGAAGACAGAAAGATAGATCCTGACCAG
ACAGTAATCAGAGCTGAGTCTTTGGATGGTGGTGACACCAGTTCTACAGTTGTAGAATCT
CAAGAGGGGCTTTCTGGCACTCATGTCCCAGAGTCTTCTGATTGTTGTGAAGGTTTTATT
AATACTTTTTCAAGCAATGATATGGATGGGCAAGACTTAGATTACTTTAATATTGATGAA
GGCGCAAAAAGTGGCCCACTAATTAGTGATGCTGAACTTGATGCCTTTCTGACAGAACAG
TATCTTCAGACCACTAACATAAAGTCTTTTGAAGAAAATGTAAATGACTCTAAATCGCAA
ATGAATCAGATAGATATGAAAGGCTTAGATGATGGAAACATCAATAATATATATTTCAAT
GCAGAAGCAGGAGCTATTGGGGAAAGTCATGGTATTAATATAATTTGTGAAACAGTTGAT
AAACAAAATACAATAGAAAATGGCCTTTCTTTAGGAGAAAAAAGCACTATTCCAGTTCAA
CAAGGGTTACCTACCAGTAAGTCTGAGATTACAAATCAATTATCAGTCTCTGATATTAAC
AGTCAATCTGTTGGAGGGGCCAGACCTAAGCAATTGTTTAGCCTTCCATCAAGAACAAGG
AGTTCAAAGGACCTGAATAAGCCAGATGTTCCAGATACAATAGAAAGTGAACCCAGCACA
GCAGATACCGTTGTTCCAATCACTTGTGCTATAGATTCTACAGCTGATCCACAGGTTAGC
TTCAACTCTAATTACATTGATATAGAAAGTAATTCTGAAGGTGGATCTAGTTTCGTAACT
GCAAATGAAGATTCTGTACCTGAAAACACTTGCAAAGAAGGCTTGGTTTTGGGCCAGAAA
CAGCCTACTTGGGTTCCTGATTCAGAAGCTCCAAACTGTATGAACTGCCAAGTCAAATTT
ACTTTTACCAAACGGCGACACCATTGCCGAGCATGTGGGAAAGTATTTTGTGGTGTCTGT
TGTAATAGGAAGTGTAAACTGCAATATCTAGAAAAGGAAGCAAGAGTATGTGTAGTCTGC
TATGAAACTATTAGTAAAGCTCAGGCATTTGAAAGGATGATGAGTCCAACTGGTTCTAAT
CTTAAGTCTAATCATTCTGATGAATGTACTACTGTCCAGCCTCCTCAGGAGAACCAAACA
TCCAGTATACCTTCACCAGCAACTTTGCCAGTCTCAGCACTTAAACAACCAGGTGTTGAA
GGACTATGTTCCAAAGAACAGAAGAGAGTATGGTTTGCAGATGGTATATTGCCCAATGGT
GAAGTTGCAGATACAACAAAATTATCATCTGGAAGTAAAAGATGTTCTGAAGACTTTAGT
CCTCTCTCACCTGATGTGCCTATGACAGTAAACACAGTGGATCATTCCCATTCTACTACA
GTGGAAAAGCCAAACAATGAGACAGGAGATATTACAAGAAATGAGATAATTCAGAGTCCT
ATTTCTCAGGTTCCATCAGTGGAAAAATTGTCTATGAACACAGGAAATGAGGGGTTACCT
ACTTCTGGTTCATTTACACTAGATGATGATGTTTTTGCAGAAACTGAAGAACCATCTAGT
CCTACTGGTGTCTTAGTTAACAGCAATTTACCTATTGCTAGTATTTCAGATTATAGGTTA
CTGTGTGATATTAACAAGTATGTCTGCAATAAGATTAGTCTTCTACCTAATGATGAGGAC
AGTTTGCCCCCACTTCTGGTTGCATCTGGAGAAAAGGGATCAGTGCCTGTAGTAGAAGAA
CATCCATCTCATGAGCAGATCATTTTGCTTCTTGAAGGTGAAGGCTTTCATCCTGTTACA
TTTGTCCTAAATGCTAATCTACTCGTGAATGTCAAATTCATATTTTATTCCTCAGACAAA
TATTGGTACTTTTCAACCAATGGATTGCATGGCTTGGGACAGGCAGAAATTATTATTCTA
TTGTTATGTTTGCCAAATGAAGATACTATTCCTAAGGACATCTTCAGACTATTTATCACC
ATATATAAGGATGCTCTAAAAGGAAAATACATAGAAAACTTGGACAATATTACCTTTACT
GAGAGTTTTCTCAGTAGCAAGGATCACGGAGGATTCCTGTTTATTACACCTACTTTTCAG
AAACTTGATGATCTCTCATTACCAAGTAATCCTTTTCTTTGTGGAATTCTTATCCAGAAG
CTTGAGATTCCCTGGGCAAAGGTTTTTCCTATGCGTTTAATGTTGAGATTGGGTGCAGAA
TATAAAAGTAAGTTT

Protein sequence predicted based on nucleotide sequence

MDSYFKAAVSDLDKLLDDFEQNPDEQDYLQDVQNAYDSNHCSVSSELASSQRTSLLPKDQ
ECVNSCASSETSYGTNESSLNEKTLKGLTSIQNEKNVTGLDLLSSVDGGTSDEIQPLYMG
RCSKPICDLISDMGNLVHATNSEEDIKKLLPDDFKSNADSLIGLDLSSVSDTPCVSSTDH
DSDTVREQQNDTSSELQNREIGGIKELGIKVDTTLSDSYNYSGTENLKDKKIFNQLESIV
DFNMSSALTRQSSKMFHAKDKLQHKSQPCGLLKDVGLVKEEVDVAVITAAECLKEEGKTS
ALTCSLPKNEDLCLNDSNSRDENFKLPDFSFQEDKTVIKQSAQEDSKSLDLKDNDVIQDS
SSALHVSGKDVPSSLSCLPASGSMCGSLIESKARGDFLPQHEHKDNIQDAVTIHEEIQNS
VVLGGEPFKENDLLKQEKCKSILLQSLIEGMEDRKIDPDQTVIRAESLDGGDTSSTVVES
QEGLSGTHVPESSDCCEGFINTFSSNDMDGQDLDYFNIDEGAKSGPLISDAELDAFLTEQ
YLQTTNIKSFEENVNDSKSQMNQIDMKGLDDGNINNIYFNAEAGAIGESHGINIICETVD
KQNTIENGLSLGEKSTIPVQQGLPTSKSEITNQLSVSDINSQSVGGARPKQLFSLPSRTR
SSKDLNKPDVPDTIESEPSTADTVVPITCAIDSTADPQVSFNSNYIDIESNSEGGSSFVT
ANEDSVPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVC
CNRKCKLQYLEKEARVCVVCYETISKAQAFERMMSPTGSNLKSNHSDECTTVQPPQENQT
SSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADGILPNGEVADTTKLSSGSKRCSEDFS
PLSPDVPMTVNTVDHSHSTTVEKPNNETGDITRNEIIQSPISQVPSVEKLSMNTGNEGLP
TSGSFTLDDDVFAETEEPSSPTGVLVNSNLPIASISDYRLLCDINKYVCNKISLLPNDED
SLPPLLVASGEKGSVPVVEEHPSHEQIILLLEGEGFHPVTFVLNANLLVNVKFIFYSSDK
YWYFSTNGLHGLGQAEIIILLLCLPNEDTIPKDIFRLFITIYKDALKGKYIENLDNITFT
ESFLSSKDHGGFLFITPTFQKLDDLSLPSNPFLCGILIQKLEIPWAKVFPMRLMLRLGAE
YKSKF

Coding Sequence Details

Insert Sequence Verified?:
N
Verification Method:
Verified by the ORFeome collaboration
Mutations:
None
Discrepancy:
2 errors; 2 non-synonomous errors
                                                    

5' Linker Sequence:
None
3' Linker Sequence:
None

Recommended Growth Condition:

Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:  bacterial    Marker:  ampicillin
Host Type:  mammalian    Marker:  blasticidin
Bacterial Selection Condition: 100 ug/mL ampicillin
Growth Condition: Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments: Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results:
None
Recommended expression in:
Not Applicable