Gene:
Gene Symbol:
PCDHB1
Gene Name:
protocadherin beta 1
Original Clone ID:
ccsbBroadEn_03108
Keyword:
None
Species:
Homo sapiens
Type:
cDNA
Vector Name:
pENTR223
Format:
FUSION
Source:
The ORFeome Collaboration
Description:
Original GenBank Accession: BC112096.1
Comments:
None
Mutation / Discrepancy:
No / No
Publications:
None
Authors:
Harvard Medical School
Dana-Farber Cancer Institute
Broad Institute of Harvard and Massachusetts Institute of Technology (MIT)
David E Hill
David E Root
The ORFeome Collaboration
Dana-Farber Cancer Institute
Broad Institute of Harvard and Massachusetts Institute of Technology (MIT)
David E Hill
David E Root
The ORFeome Collaboration
HsCD00516309
Price:
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AVAILABLE
No restriction
Special MTA: None
Special MTA: None
ATGGCGGGTACGCGCAGAAAATCTTTGCAAAACAGGCAAGTGGGATCTCTTCTCATTTTT
CTGTGCATATCTGTGGGGGATGCGACAACTATCCGCTATTCAGTGGCAGAGGAAATGGAG
AGCGGCTCGTTTGTGGCCAACGTAGCTAAGGACCTAGGACTGGAGGTAGGGAAGCTGGCT
GCGCGCGGGGCGCGGCTGGTTTCCGAGGGCAACAAAATGCATTTCCGGCTCCACCGCAAG
ACGGGAGATTTGTTTGTGAAGGAGAAACTGGATCGGGAGTCACTTTGTGGCAAAGCCGAC
CCTTGTGTTCTGCACTTTGAAGTAGTCCTGGTGGAGCCGCTGCAGTCCTTCCGGGCCGAG
GTCAGGGTATTTGATATCAATGACAATGCCCCAGTTTTCCTAAACAAGGAGCCGCTTTTA
AAGATTCCGGAGAGCACCCCTTTGGGTTCACGTTTTCCTCTGCAGAGCGCCCAGGATCTG
GACGTGGGCCTTAACGGTCTCCAGAACTACACCCTGAGTGCCAATGGGTATTTCCACCTG
CACACCCGCTTCTGCAGCCACGGGCCTAAATATGCTGAGCTGGTGCTGAACAAACCCCTG
GACCGAGAGGAGCAGCCTGAAGTCAACTTGACAATTACGGCGGTGGACGGCGGGTCCCCG
CCTAAGTCTGGCACAGCTCACATCCACGTGGTGGTTCTGGATGTCAACGACCACGTGCCC
CAGTTCTCGCGACTGGTGTACAGAGCCCAGGTATCAGAGAACAGCCCCAATGGCTCTTTG
GTGGCCACGGTGACTGCCGTGGACCTAGACGAGGGCACCAACAAAGCGATAACTTACTCT
TTAGCTCAAAACCCAGAAGCAATTCTCAAGACGTTTCAGATTGACCCTCAAAATGGAGAA
GTTCGACTAAGAGGACCCCTCGATTTTGAAGCCATTGAAACATACGACATTGACATTCAA
GCTACAGATGGTGGAGGCCTCTCTGCCCACAGCAAAGTCCTGGTAGAAGTGGTGGATGTG
AATGACAATCCTCCCGAAGTGATGGTCTCCTCTGTGTCCAGCCCACTCCCTGAAGACTCA
CCACCACAGACAGTAGTAGCCCTTTTCACTATCAGAGACCGGGACATTCGAGTGGGAGGA
AAAGTCACCTGCTTCCTCAGAGAAGACCTTCCCTTTGTAATCAAACCTACATTTGGGAAT
TCTTACTCACTGGTCACTGACAGAAGCTTGGATCGGGAGGAGGTCTCAGGCTATAATATC
ACCATTGTTGCCATGGATACTGGACCACCTAGCTTGTCTGCCGAGACTATGATAGAGGTG
CTAATATCCGACGTTAATGACAATCCTCCAATATTTCGGGAAGATTCCTATATCTTGACT
GTTCGAGAAAACAACAGTCCTGCGGTTTTTATTGGCAAAGTCCATGCTGAGGATCTTGAT
TTGGGTGAGAATGCCCAAATAACATATTCTCTGTTGCCTCCAAAAAACGGAGATCTTTCA
GTCTTTGCTTACATATCCATAAATTCAGGCAATGGGAAGCTCTACGCGCTGAGAACCATG
GATTATGAGGCCATTCAAGATTTTCAATTTGTGGTAAAGGCAACTGATGGGGGCTTCCTG
TCACTGAGTAGCCAAGTTACTGTCAGAGTGGTTGTCCTAGATGACAATGACAATCGTCCA
ATGATCTTATACCCACTGCAGAACGGCACCTTGCCCTGCAATGACCTGGTGCCCAGGTCT
GCAGAGGCAGGCTACCTAGTGACCAAAGTGGTGGCTGTGGATGGTGACTCAGGTCAGAAT
TCTTGGCTTTCATATCATCTACTTAAGGCCACTGACCTTGGGTTATTTTCTGTTCAAAGA
CAAAATGGAGAAATCCATACATTAAGGCAGATATCTGAGAGAGACCCCATGATGCAGAAA
TTGATCATTCTTGTTCAGGATCACGGCCAACCAGCTCTTTCCACTACTGTCTCACTCAAC
ATCCTGCTGGTAGATGGCTTTTCAGAGCCCTACCTGCAGTTCCAGGATCCAACCAAGCAT
TCTAGAAAGGTAAATCCATCCACTAAATATTTGGTCATTTCTCTGGTCATCCTTTCCTTT
CTCTTTCTCCTCTCTGTCATAGTGATCTTCATTATACATGTCTACCAAAAGATTAAATAT
AGAGAAAAGTTCACAATTCAAGAGCATTTCTATGATGACTGTAATTTCTCTAACAACCTG
GTACAAGGACAAGGCAATGGATCCTTATCTCGGCCTTGTCCATATGAAATGTGTTCAGCC
ACTGGCACTGGTAATAGTGAGTTTCGCTTTCTTAAGCGTTTTATGCCCAACTTCCCTTTC
CCTCATGCCACTGGGGAGATAAAAATGGAGGCTGGCTCCAGTTTGCCCCCAAATTCTGAT
AGGAATAAGTCTCAGAGATTAGAGGGCCATGACCAGGTATCTGATGACTATATG
Protein sequence predicted based on nucleotide sequence
MAGTRRKSLQNRQVGSLLIFLCISVGDATTIRYSVAEEMESGSFVANVAKDLGLEVGKLA ARGARLVSEGNKMHFRLHRKTGDLFVKEKLDRESLCGKADPCVLHFEVVLVEPLQSFRAE VRVFDINDNAPVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANGYFHL HTRFCSHGPKYAELVLNKPLDREEQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVP QFSRLVYRAQVSENSPNGSLVATVTAVDLDEGTNKAITYSLAQNPEAILKTFQIDPQNGE VRLRGPLDFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVMVSSVSSPLPEDS PPQTVVALFTIRDRDIRVGGKVTCFLREDLPFVIKPTFGNSYSLVTDRSLDREEVSGYNI TIVAMDTGPPSLSAETMIEVLISDVNDNPPIFREDSYILTVRENNSPAVFIGKVHAEDLD LGENAQITYSLLPPKNGDLSVFAYISINSGNGKLYALRTMDYEAIQDFQFVVKATDGGFL SLSSQVTVRVVVLDDNDNRPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQN SWLSYHLLKATDLGLFSVQRQNGEIHTLRQISERDPMMQKLIILVQDHGQPALSTTVSLN ILLVDGFSEPYLQFQDPTKHSRKVNPSTKYLVISLVILSFLFLLSVIVIFIIHVYQKIKY REKFTIQEHFYDDCNFSNNLVQGQGNGSLSRPCPYEMCSATGTGNSEFRFLKRFMPNFPF PHATGEIKMEAGSSLPPNSDRNKSQRLEGHDQVSDDYM
Coding Sequence Details
Insert Sequence Verified?:
N
Verification Method:
Verified by the ORFeome collaboration
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
spectinomycin
Bacterial Selection Condition:
100 ug/mL spectinomycin
Growth Condition:
Growth at 37 degrees C in LB supplemented with 100 ug/mL spectinomycin.
Comments:
None
Protein Expression Results:
None
Recommended expression in:
Not Applicable
Vector Name:
pENTR223
Synonyms:
pDONR223, pENTR223-XnCDSYn
Description:
Gateway type (lambda att-type) recombinational cloning entry (master) vector; spectinomycin resistance; recombinational cloning.
Comments:
Additional information about this vector is available from the commercial website and at the ORFeome website http://orfeomecollaboration.org/vectors.php; also see supplemental figure 1 of the paper PubMed ID 15489335.
Size (bp):
2815
Parent Vector:
None
Properties:
Gateway, donor (entry), recombinational cloning
Author Name:
Mark Vidal
Publications:
PMID:
15489335
Title: Human ORFeome Version 1.1: A Platform for Reverse Proteomics
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
bacterial origin
ori
bacterial origin of replication
2220
2753
gene fragment
pas
5p stem of pBR primose assembly site
63
73
gene fragment
pas prime
3p stem of pBR pas(L)
105
116
recombination site
attL1
attL1 recombination site
570
665
recombination site
attL2
attL2 recombination site
793
696
selectable marker
SpnR
spectinomycin resistance gene
1062
2072
trxn termination sequence
T1-T2
rrnBT1 and T2 terminators
510
224
