Gene:
Gene Symbol:
Gene Name:
Original Clone ID:
None
Keyword:
Sequence Verified: Yes; 3'UTR length: 2269; Forward Primer: CTGCAGGCTTGGCCCTAG; Reverse Primer: CACACAACATCCAACACACACCG
Species:
Homo sapiens
Type:
3'UTR
Vector Name:
P2RP3
Format:
None
Source:
Center for Personalized Diagnostics
Description:
Please cite: Kotagama, K., Babb, C.S., Wolter, J.M., Murphy, R.P. and Mangone, M. "A human 3'UTR clone collection to study post-transcriptional gene regulation". BMC Genomics 16, 1036 (2015).
Comments:
None
Mutation / Discrepancy:
No / No
Publications:
Authors:
Center for Personalized Diagnostics
Marco Mangone
Kasuen Kotagama
Marco Mangone
Kasuen Kotagama
HsUT00698197
Price:
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AVAILABLE
No restriction
Special MTA: None
Special MTA: None
Insert sequence: 2268nts
Open reading frame: 1 to 2268
GACCAGCGGCAGCTGCAGGCTTGGCCCTAGCCGCCCTCCCCGATGGCGGGGATCTGGGAG
GGTCGGGGGAGCAAAAGGCGGTGAGAGAGGATTTATTTAAAAAAATAAACCCGAGGAAGA
TGCTCATCTGAGCCAGCACCGCCGGCTTTCAGGGCAGCCCCTGCAGACGTCTGGCCCTGG
CGGGTGGCTGCAAGCCCACCTCGGCCCTCCCTGCGCTTCCTGAGCAGTCCCTGCTTATGA
TGGGCTCCCCAGGAAGCCCACTGCCTCCTCCCTGGCTGCAGCCTCCGGGGTTCAGCCTCC
TGTCTCGCCAGAAGACTCCTAGGCCCTTGGGGTGGCGCGCCTGCCTTTTCTAGTTTTATA
CAAAGACAGCCACTTTTAGCTACTGCTAATGAGACTTGAGTCTATTTTTGTACAAAAGAG
AAGCAAAATCTTTTTTCTAAACCTGTGCCTCCCTCTCCTCGGACACCCAGGGTCTAGCCG
CTGCCCTGGGTCCTGCCTGCAGTATTACAGAGGTCGTCGAAAGGTGCAGCTGCGTTCTGA
GGGCGTGGGGAATGGGCAGGTGGCCTCTGCTGGTCTCTGGCTCTACGTTTAGGCACCCCT
TTCCCCAGCCTCTCCTCCTTGGGCAGGGTCTCTGCTCCAGCAAGCAAACAGGGTGGCCCA
GGTGGCTATTTTGAGAACTCCAGCTGGTGCCCCCAGACAGCTGCTCAGAGCCAAGGGGGC
AGAGGGCTTTCAGCGCCCCCAGGCCTGCCCTGCTATTTCAGGCCCTCAGCTGTCGGGGGC
CACTGTGTTTCTGTGCTCCAAGTTGAGACTCGGCCGCAGCGGCGTCAGACTTTTCTTTGC
GATGTCCTCGGTTTCCCATTTGTTGCTGCTGCTGCTCATTCCACACTGTTGAGACCTTGT
GGTCTCGATGCTGCTGGCCTCCCTCCGTCCCTCTGTCCACTTGTGGGTCCTGGGGTCGTC
TTAGCAGAGCCACCGCCAAGGTTTGCACTCAGGGAGGGGCTGATGGAGGGCTGGGCGCCA
TGGGGTCAGGGAGGCCCCAGGGACCCATGGGCAGAGCTGGGGAGCCAGGAGGATGGGTCT
GCCTGCTCTGGGGGTGCAGGCTCTGCAGACACCCCAATTGCTGCTCTGTTGCTGTGCCTA
GTCTAGTGTCCCCCAAAGCATCGGGGGGCCACGCAAGTGTGGGTGTGTGAGTGTGCGTAT
GTGGGGACCCCCCAGGGCATGGTGGGGTCTGAGGCGTGTGTTCCCATTTAGGGCTGAATG
AAGCCATGACTTGGAAAGGTGGTGGGGGGTGGATGGCGGCTGTGACTCAGGGCCCAGGGA
TCACATGGGGGTCACTGCTGCCATCAGCAGTCAGGCAGGGAGAACAGAAATGCAAAAATA
CAGATGTCTATTTTTCTAAACTGGGGGGTGGAGGGGTGCCTCCTGACAGCTTCCAAAGAG
CTGACTGTGGAGGGCCCACAGTGTATCCCACCCCTGCCCGAGAGTCTCTCTCCTTTGGGA
CCCCCGGGTTCCCAGAGCTCCGAGGAAACTGATCCTTCATGTTTCAATAGCTGTTGTTGT
TTTTCTCTTTGGGCCGGGCCGGGCCGGGGAAGGGCCGAGCAGGCTCCAGGAGGCCTCCAG
AGTCAGCTGGACCTTGCTGTGTCGCCCGCAGGCAGCCCTGCAGACACCGGTGAGGTGGGA
TGATTTCAGGAGGTCCCAGCCCGGGACTGCCCGCCCCTCTGCCCTGGGAACCAGTCCAAG
GGGCTGTCAGTTGAATTTGCCTTTTTGTTGTTGTTGTTGTTTTTGTTGTTTATTTGTTCT
CCTTTTAAGGAATTATGAAGCTAAGAAAAGTTTTGTGTTTTGGGGGTTGGTGGACAAAGT
TCTAGCTGATTAAATATGGTCTAACTTATTGATACTATTTTTTTTTCTTTTAATGTTGTA
CTGTGGAGAAAAACTATTTTGAGCCATGGGGTTGGTGTTTACAAGAACTTTCCACTTTTG
CCAAAATGTTACAATTGAAAGGCATCTATCTGCGTCTTCAGTTTCCTGATATTTTCTTAA
AAGATCTAGTGTCCTTTTTGTACACTAAACAGGTGAATGCTGACTTTTTTCATTCTCCAA
TAAATTTCACTGAACTGAACCTGGCAGCCCAGGCTGCCTGGCTGGTGTGTGTGGTGTGTG
GGTGTTGGTGTATCTGTGTGTGTGGTGTATGGTGTGTATGTGTGTGTGGTGTGTGTTGGG
GTGTGTGGGTGTGTAGTATATCTGTGTCGGTGTGTGTTGGATGTTGTGTG
Protein sequence predicted based on nucleotide sequence
DQRQLQAWP*PPSPMAGIWEGRGSKRR*ERIYLKK*TRGRCSSEPAPPAFRAAPADVWPW RVAASPPRPSLRFLSSPCL*WAPQEAHCLLPGCSLRGSASCLARRLLGPWGGAPAFSSFI QRQPLLATANET*VYFCTKEKQNLFSKPVPPSPRTPRV*PLPWVLPAVLQRSSKGAAAF* GRGEWAGGLCWSLALRLGTPFPSLSSLGRVSAPASKQGGPGGYFENSSWCPQTAAQSQGG RGLSAPPGLPCYFRPSAVGGHCVSVLQVETRPQRRQTFLCDVLGFPFVAAAAHSTLLRPC GLDAAGLPPSLCPLVGPGVVLAEPPPRFALREGLMEGWAPWGQGGPRDPWAELGSQEDGS ACSGGAGSADTPIAALLLCLV*CPPKHRGATQVWVCECAYVGTPQGMVGSEACVPI*G*M KP*LGKVVGGGWRL*LRAQGSHGGHCCHQQSGRENRNAKIQMSIFLNWGVEGCLLTASKE LTVEGPQCIPPLPESLSPLGPPGSQSSEETDPSCFNSCCCFSLWAGPGRGRAEQAPGGLQ SQLDLAVSPAGSPADTGEVG*FQEVPARDCPPLCPGNQSKGLSVEFAFLLLLLFLLFICS PFKEL*S*EKFCVLGVGGQSSS*LNMV*LIDTIFFSFNVVLWRKTILSHGVGVYKNFPLL PKCYN*KASICVFSFLIFS*KI*CPFCTLNR*MLTFFILQ*ISLN*TWQPRLPGWCVWCV GVGVSVCVVYGVYVCVVCVGVCGCVVYLCRCVLDVV
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
kanamycin
Bacterial Selection Condition:
kanamycin
Growth Condition:
Growth in 50 ug/ml of kanamycin in LB at 37 degrees
Comments:
None
Protein Expression Results:
None
Recommended expression in:
Not Applicable
Vector Name:
P2RP3
Synonyms:
''
Description:
Features:
ccdB – Bacterial toxin (suicide gene)
M13 reverse – Primer binding site
M13 Forward – Primer binding site
T7 – Promoter
CAT – Promoter
attP2 – Recombination site
attP3 – Recombination site
CmR – Resistance Chloramphenicol (Selectable marker)
KanR – Resistance to Kanamycin (Selectable marker)
Comments:
CPD only
Size (bp):
4773
Parent Vector:
None
Properties:
Gateway, baculovirus/insect cell expression, baculovirus/insect cell transposition, with tag/fusion/marker
Author Name:
Invitrogen
Publications:
None
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
death cassette
ccdB
Death Cassette
2084
2389
primer
M13 forward
537
553
primer
M13 reverse
3038
3054
promoter
T7
3015
3033
promoter
CAT
980
1082
recombination site
attP2
591
822
recombination site
attP3
2746
2977
selectable marker
CmR
Chloramphenicol resistance
1083
1742
selectable marker
KanR
3167
3967
