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Detailed Plasmid Information

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Explanation of Terms


Gene: Gene Symbol:  None
Gene Name:  hypothetical
Sequence              Map: pDONR cofig.pdf
Original Clone ID: FLH142108.01X
Keyword: None
Species: Yersinia pestis KIM10+
Type: cDNA
Vector Name: pDONR221               Format:  CLOSED
Source: HIP
Description: None
Comments: None
Mutation/
Discrepancy :
No / No
Publications: None
Authors: HIP
YpCD00016855

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 2367nts         Open reading frame : 1 to 2367

ATGCAGCAGGACTCACTCAAAACCAGAATAAAAGATAATGCATTTTGGGGTGATGCTTAC
CAGCACCTGCATGTAAAAATGGATACCGACTGGGCCTTTATTAGCCAAAATATGGGGCCT
TCCCTGTATAAAGATTTTAGTCTTGAAGGTGTCTTTGTCATTGATGGGCAGGGAAAGACC
CGTTATTCAGTGATCAATGGGCAATTAGTCAATACCGACCTACAGAGTTGGCTGCATAAA
GATATTACGCCACTAATCGATATCGCACGTCAGCGGGCTGAAAAACCATATATTGCTGTC
GATACTCTCGAAATAGCGGGTCAGCCAGCATTAATTGCCGCCGCCGCATTAACCCCCGGA
GAGGATCCGCGTGTCCAATGGGTTGCTGGCCCCCCTTCCGTGTTGGTATTTATCAATATC
CTGACACCGGCTGAACTGAGCGCATTGGGGGAGAATTATGGTATCCACAACCTGCGTATG
CCGAGAAATAGCCAGGATGCCACATCCAAACCTTCGCTGGTCATCGCCTCATCAGATAAC
AGTACCCTGACCTTACATTGGGATCAGGAGATGCCAGGAACCCCATTATTAAATATCTTG
CTACCGTTACTGGCGTTGGTTGCCCTAATTATTGGGTTAACCGCCTGGCTGGTTATACGC
CGCGCCATCTCGGAGGCGCAAGCCACCGATAGGAGCCGGGCCGCGTTGGCTGCCAGCGAA
GAACGTTTCCGCCATGTGGCAGAATCGGCCAGTGATTGGTTATGGGAGACCGACGCAGAG
TTACAGGTGACTTATCTCTCACCACGCTTCTTAATCATCAGCGGATGGAGTGTTGATCAC
TGGCTGGGGCTTAATCTTGATTCACTGTTAAATTGTGACATTACTTCGCTACGGACTTGG
TTGCAGCACACCCATTTAACTGATTCACGTAACGAACTGCAATGCACTTATTTCTCAGCT
AAAGGTAGCAAACGGGTCTGCCGAATCCATGCCAAGCCGATCATTCAGCAGGGTGAAATC
GTCGGTTTTCGTGGTACCGCCTCAGATCTTACGCGTGAAATCGAAGCTGAGAAACGTATT
GAGCACCTTTCCCTACATGATGCGCTAACCGGTTTACCTAACCGGACGTTGATGACCGAG
TTCTTGGAAAATAAGCTGCACAATCTGGCCGCCGTAGAGCATCCCTTGGTGATCCTTAAT
GTTAATTTGGATAAGTTCAAGCCCGTCAATGACATCTTTGGTCATGTCACTGGCGATCAA
GTGCTTTATCAGGTTGCTGAGCGCCTGCGCTCCTGCTTGCGTGACAAGGATTTAGTCTCC
CGCCAAGGCGGAGATGAGTTTGTTTTGATTATTTCCAATCTCTCCTCTTCCTACGAGATC
GAACTGTTATGCGCCAGGGTGATCACCCGTCTCCAAACACCGTACGTGATCAATGATCAA
GAGATTTATCTTGGGGCCAGTATTGGTATTACGTTAGCACCACAAGACTCAATGCAAGCG
GAAGAATTGCTGCGATTCGCCGATATCGCGATGTGTGAAGCCAAAAATAGTCCTCGTAAC
CGGTGGCGTTTTTACGCCAGTGAAATGAATGACCGCCTGATGCAACGAATTGAACTTGAA
AAGTTTTTACGTTTAGCCGTTAAAAAAAGCGAATTCTGTCTTTACTATCAACCTCGCTAC
CGTACTGACGACATGCAACTGATAGGGGCAGAGGCGTTGGTACGCTGGAATCACCCGGTT
CTGGGGTTGCTGATGCCAGATCAATTTATTGCGTTAGCGGAGGAGACCGGGCTTATCACT
GCCATCAGCGATTGGACCCTCTTACAAGCCTGCCAAGACGCGATGACCTGGCCAACCTCA
TTGATTGTCTCGGTAAATATCTCGGCGATTGAATTCAGGGGCCAATGTCTTATCGAGCGA
GTCCGGCAAGCCCTCTTAGTGACAGGTTTGCCCAGCCATCGGCTCGAGTTGGAGATCACC
GAGAGGATCATGATTGAAGATGCTGATGGCGCACTGAAGATCATGACTGCGCTAAAAACC
TTGGGTATACGCCTGTCGATAGATGATTTTGGTACAGGATATTCTTCACTGAATTATCTG
CACCGTTTTCCTTTTGACGGGTTGAAAATTGATAAAAGTTTTATTGATAAACTCACCGAG
TCACATGAAGGGCAATCCATTGTCGAAGGTATTATTAACCTGGGCCATGCTATTTCAATG
ACCGTGATCGCCGAAGGCGTGGAAACGGCCGAGCAACTCACCTATTTGCAGTCACTCCAT
TGTGATGAGGTGCAGGGGTATTTTCTTGCCAAACCTATGCCGGTAGAGGCGTTGTCTTTG
GTTTTTTCTGAGGATTTATCGGTGTAG


Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: Sequence Verification
Reference Sequence Annotations:
End on reference sequence 2367
Start on reference sequence 1
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
5p GTACAAAAAAGCAGGCTCCACC(atg-goi)

3' Linker Sequence:
5p (goi-stop)GACCCAGCTTTCTTGTAC

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  kanamycin
Bacterial Selection Condition:  50ug/mL kanamycin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Conditions for Gateway-type vectors in recombined (with insert) form and other kanamycin resistant vectors.
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pDONR221

pDONR221 in advanced viewed

Synonyms: None
Sequencing Primer: Forward:  U19
Reverse:  AttP2
Description: Recombinational donor/master vector with M13 F and R primer sites; kanamycin resistance; recombinational cloning.
Comments: The position of features were determined for the unrecombined (empty) form of the vector, which is described in detail on the Invitrogen website.
Size (bp): 4762
Parent Vector: None
Empty Vector: None
Properties: Gateway, donor (entry), recombinational cloning
Author Name: Invitrogen
Publications: None
Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
bacterial origin ColE1 ColE1 (pUC-type) origin of replication 4086 4759
negative selection marker ccdB ccdB negative selection gene (death cassette), LOST in recombined (with insert) form 1502 1197
primer site M13 forward primer M13 Forward priming site 537 552
primer site M13 reverse primer M13 Reverse priming site 3027 3034
recombination site attP1 attP recombination site 1 LOST in recombined (with insert) form 570 801
recombination site attL1 attL recombination site 1 present in recombined (with insert) form only, position is approximate 570 801
recombination site attL2 attL recombination site 2 present in recombined (with insert) form only, position is approximate 2985 2754
recombination site attP2 attP recombination site 2 LOST in recombined (with insert) form 2985 2754
selectable marker CmR chloramphenicol resistance gene, LOST in recombined (with insert) form 2506 1847
selectable marker KanR kanamycin resistance gene 3156 3965
trxn termination sequence rrnB T2 rrnB T2 transcription termination sequence 295 268
trxn termination sequence rrnB T1 rrnB T1 transcription termination sequence 470 427

 

  • Gene
  • Protein
  • Clone
  • Organism
  • Reagents

Gene

Target GenBank: NP_670688

 

Clone

Cloning Information : 142108
HIP Master Clone ID : 118375
Original Clone ID : FLH142108.01X

Organism


Species Specific ID: 22127265

Reagents

Labome : y3389-cDNA