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Prkab1 (Rattus norvegicus) in pDONR221 (Gateway donor/master vector)

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Explanation of Terms


Gene: Gene Symbol:  Prkab1
Gene Name:  protein kinase, AMP-activated, beta 1 non-catalytic subunit
Sequence              Map: pDONR cofig.pdf
Original Clone ID: 1234.1.77_GO.59083
Keyword: full-length cds
Species: Rattus norvegicus
Type: cDNA
Vector Name: pDONR221               Format:  CLOSED
Source: Center for Eukaryotic Structural Genomics
Description: None
Comments: This is a GATEWAY entry clone having a TEV protease cleavage site fused to the open reading frame with the initiation codon replaced with TCC.
Mutation/
Discrepancy :
No / No
Publications: None
Authors: University of Wisconsin Madison
PSI
Center for Eukaryotic Structural Genomics
RnCD00313260

Price:  Login for Pricing
AVAILABLE
No restriction
Special MTA: PSI

 

Insert sequence: 831nts        
Open reading frame : 51 to 881

ATGAGCAATGCTTTTTTATAATGCCAACTTTGTACAAAAAAGCAGGCTCCGAAAACCTGT
ACTTCCAGTCCGGCAATACGAGCAGCGAGCGCGCCGCGCTGGAGCGGCAGGCTGGCCATA
AGACGCCGCGGAGGGACAGCTCGGGGGGCACCAAGGATGGGGACAGGCCCAAGATCCTGA
TGGACAGCCCCGAAGACGCCGACATCTTCCACACCGAGGAAATGAAGGCTCCAGAGAAGG
AGGAGTTCCTGGCGTGGCAGCACGACCTCGAGGTGAATGAGAAAGCCCCCGCCCAGGCTC
GGCCCACCGTATTTCGATGGACAGGGGGTGGAAAGGAGGTCTACTTGTCTGGATCCTTCA
ACAACTGGAGCAAATTGCCCCTCACTAGAAGCCAAAACAACTTCGTAGCCATCCTGGACC
TGCCGGAAGGAGAGCATCAGTACAAGTTCTTTGTGGATGGCCAGTGGACCCACGATCCTT
CCGAGCCAATAGTAACCAGCCAGCTTGGCACAGTTAACAACATCATTCAAGTGAAGAAAA
CTGACTTTGAAGTATTTGATGCTTTAATGGTGGATTCCCAAAAGTGCTCCGATGTATCTG
AGCTGTCCAGTTCCCCCCCAGGACCCTACCACCAGGAGCCTTACATCTCTAAACCAGAGG
AGCGGTTCAAGGCCCCGCCCATCCTCCCGCCTCACCTGCTGCAGGTCATCTTGAACAAGG
ACACGGGCATCTCTTGTGATCCAGCGCTGCTTCCGGAGCCCAACCACGTCATGCTGAACC
ACCTCTATGCACTCTCTATCAAGGATGGAGTGATGGTGCTCAGTGCGACCCATCGGTACA
AGAAAAAGTACGTCACCACCCTCCTCTACAAGCCCATATGATAGGACCCAGCTTTCTTGT
ACAAAGTTGGCATTATAAGAAAGCATTGCTTA


Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: Sequence Verification
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
CCAACTTTGTACAAAAAAGCAGGCTCC

3' Linker Sequence:
TAGGACCCAGCTTTCTTGTACAAAGTTGGC

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  kanamycin
Bacterial Selection Condition:  50ug/mL kanamycin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Conditions for Gateway-type vectors in recombined (with insert) form and other kanamycin resistant vectors.
Protein Expression Results: ProteinExpressed: Not_Applicable
ProteinPurified: Not_Applicable
SolubleProtein: Not_Applicable
Find experimental protocols in GO.59083
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pDONR221

pDONR221 in advanced viewed

Synonyms: ''
Sequencing Primer: Forward:  U19
Reverse:  AttP2
Description: Recombinational donor/master vector with M13 F and R primer sites; kanamycin resistance; recombinational cloning.
Comments: The position of features were determined for the unrecombined (empty) form of the vector, which is described in detail on the Invitrogen website.
Size (bp): 4762
Parent Vector: None
Empty Vector: None
Properties: Gateway, donor (entry), recombinational cloning
Author Name: Invitrogen
Publications: None
Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
bacterial origin ColE1 ColE1 (pUC-type) origin of replication 4086 4759
negative selection marker ccdB ccdB negative selection gene (death cassette), LOST in recombined (with insert) form 1502 1197
primer site U19 primer 517 535
primer site Att P2 Primer 3026 3043
primer site M13 forward primer M13 Forward priming site 537 552
primer site M13 reverse primer M13 Reverse priming site 3027 3034
recombination site attP1 attP recombination site 1 LOST in recombined (with insert) form 570 801
recombination site attL1 attL recombination site 1 present in recombined (with insert) form only, position is approximate 570 801
recombination site attP2 attP recombination site 2 LOST in recombined (with insert) form 2985 2754
recombination site attL2 attL recombination site 2 present in recombined (with insert) form only, position is approximate 2985 2754
selectable marker CmR chloramphenicol resistance gene, LOST in recombined (with insert) form 2506 1847
selectable marker KanR kanamycin resistance gene 3156 3965
trxn termination sequence rrnB T2 rrnB T2 transcription termination sequence 295 268
trxn termination sequence rrnB T1 rrnB T1 transcription termination sequence 470 427

 

  • Gene
  • Protein
  • Clone
  • Experimental
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : Prkab1
Symbol Nomenclature : Prkab1
Designation : 5'-AMP-activated protein kinase 40 kDa subunit|5'-AMP-activated protein kinase subunit beta-1|5'-AMP-activated protein kinase, beta subunit|5-AMP-activated protein kinase beta subunit|AMPK beta-1 chain|AMPK subunit beta-1|AMPKb
Full Nomenclature : protein kinase, AMP-activated, beta 1 non-catalytic subunit
GENEID : 83803
GI : 38541991
GenBank Accession : BC062008
Rat Genome Database : 71057
Target GenBank: BC062008

 

Protein

SMART domain : AMPKBI : 5'-AMP-activated protein kinase beta subunit, interation domain
Structural Annotation Wiki : TOPSAN
UniProt : P80386

Clone

Cloning Information : 512953
HIP Master Clone ID : 424120
Original Clone ID : 1234.1.77_GO.59083

Experimental

TargetTrack - Experimental data : GO.59083

Organism


TAX_ID : 10116
Species Specific ID: 83803

Genome

Chromosome : 12
Map Location : 12q16
Ensembl : ENSRNOG00000001142

Reagents

Labome : Prkab1-antibody