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NEUROG1 (H. sapiens ) in pLenti6.2/V5-DEST (V5-tagged lentiviral mammalian expression vector)

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Explanation of Terms


Gene: Gene Symbol:  NEUROG1
Gene Name:  neurogenin 1
Sequence             
Original Clone ID: FLH269166.01L
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pLenti6.2/V5-DEST               Format:  FUSION
Source: HIP
Description: None
Comments: None
Mutation/
Discrepancy :
No / No
Publications: None
Authors:
HsCD00329431

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 714nts         Open reading frame : 1 to 714
Reference Sequence Alignment

ATGCCAGCCCGCCTTGAGACCTGCATCTCCGACCTCGACTGCGCCAGCAGCAGCGGCAGT
GACCTATCCGGCTTCCTCACCGACGAGGAAGACTGTGCCAGACTCCAACAGGCAGCCTCC
GCTTCGGGGCCGCCCGCGCCGGCCCGCAGGGGCGCGCCCAATATCTCCCGGGCGTCTGAG
GTTCCAGGGGCACAGGACGACGAGCAGGAGAGGCGGCGGCGCCGCGGCCGGACGCGGGTC
CGCTCCGAGGCGCTGCTGCACTCGCTGCGCAGGAGCCGGCGCGTCAAGGCCAACGATCGC
GAGCGCAACCGCATGCACAACTTGAACGCGGCCCTGGACGCACTGCGCAGCGTGCTGCCC
TCGTTCCCCGACGACACCAAGCTCACCAAAATCGAGACGCTGCGCTTCGCCTACAACTAC
ATCTGGGCTCTGGCCGAGACACTGCGCCTGGCGGATCAAGGGCTGCCCGGAGGCGGTGCC
CGGGAGCGCCTCCTGCCGCCGCAGTGCGTCCCCTGCCTGCCCGGTCCCCCAAGCCCCGCC
AGCGACGCGGAGTCCTGGGGCTCAGGTGCCGCCGCCGCCTCCCCGCTCTCTGACCCCAGT
AGCCCAGCCGCCTCCGAAGACTTCACCTACCGCCCCGGCGACCCTGTTTTCTCCTTCCCA
AGCCTGCCCAAAGACTTGCTCCACACAACGCCCTGTTTCATTCCTTACCACTTG


Coding Sequence Details
Insert Sequence Verified?: N Verification Method: Insert was fully sequenced in parent vector
Reference Sequence Annotations:
End on reference sequence 973
Start on reference sequence 260
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
5p GTACAAAAAAGCAGGCTCCACC(atg-goi)

3' Linker Sequence:
5p (goi-stop)GACCCAGCTTTCTTGTAC

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  ampicillin
Host Type:  mammalian    Marker:  blasticidin
Bacterial Selection Condition:  100 ug/mL ampicillin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pLenti6.2/V5-DEST

pLenti6.2V5-DEST in advanced viewed

Synonyms: pLenti6.2/V5-DEST
Sequencing Primer: Forward:  CMV forward
Reverse:  V5 reverse
Description: Lentiviral mammalian expression vector;CMV promoter and C-terminal V5 tag; ampicillin resistance in bacteria; blasticidin resistance in mammalian cells; Gateway recombinational cloning.
Comments: None
Size (bp): 8813
Parent Vector: None
Empty Vector: None
Properties: Gateway, acceptor (destination), lentiviral infection, mammalian expression, recombinational cloning, with tag/fusion/marker
Author Name: Invitrogen
Publications: None
Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
bacterial origin pUC ori pUC origin of replication 7733 8406
death cassette ccdB ccdB death cassette (removed when insert is present) 3767 3976
packaging signal HIV-1 psi HIV-1 psi packaging signal 521 565
poly-A signal SV40 SV40 polyadenylation signal 5639 5770
promoter RSV RSV/5' LTR hybrid promoter 1 410
promoter CMV CMV promoter driving gene of interest 1809 2392
promoter PGK PGK promoter to drive selection marker in mammalian cells 4266 4771
recombination site attR2 attR2 recombinational cloning site 4127 4142
recombination site attR1 attR1 recombinational cloning site 2440 2456
response element HIV-1 RRE HIV-1 Rev response element (RRE) 1075 1308
selectable marker AmpR Ampicillin resistance gene for selection in bacteria 6728 7588
selectable marker BlastR Blasticidin resistance gene in mammalian cells 4849 5249
selectable marker CmR chloramphenicol resistance marker (removed in plasmids with insert) 2673 3329
splice acceptor site 3' splice acceptor two 3' splice acceptors at 1656 and 1684 1656 1656
splice donor site 5' splice donor 5' splice donor 520 520
tag V5 C-terminal V5 epitope tag 4197 4238

 

  • Gene
  • Pathways
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : NEUROG1
Symbol Nomenclature : NEUROG1
SYNONYM : AKA; Math4C; NEUROD3; bHLHa6; ngn1
Designation : NGN-1|class A basic helix-loop-helix protein 6|neurogenic basic-helix-loop-helix protein|neurogenic differentiation 3|neurogenic differentiation factor 3|neurogenin-1
Full Nomenclature : neurogenin 1
GENEID : 4762
HGNC : 7764
MIM : 601726
Vega : OTTHUMG00000129138
Target GenBank: BC008687

 

Reference Sequence Alignment

  

HsCD00329431      ATGCCAGCCCGCCTTGAGACCTGCATCTCCGACCTCGACTGCGCCAGCAGCAGCGGCAGT
NM_006161.2       ATGCCAGCCCGCCTTGAGACCTGCATCTCCGACCTCGACTGCGCCAGCAGCAGCGGCAGT
                  ************************************************************

HsCD00329431      GACCTATCCGGCTTCCTCACCGACGAGGAAGACTGTGCCAGACTCCAACAGGCAGCCTCC
NM_006161.2       GACCTATCCGGCTTCCTCACCGACGAGGAAGACTGTGCCAGACTCCAACAGGCAGCCTCC
                  ************************************************************

HsCD00329431      GCTTCGGGGCCGCCCGCGCCGGCCCGCAGGGGCGCGCCCAATATCTCCCGGGCGTCTGAG
NM_006161.2       GCTTCGGGGCCGCCCGCGCCGGCCCGCAGGGGCGCGCCCAATATCTCCCGGGCGTCTGAG
                  ************************************************************

HsCD00329431      GTTCCAGGGGCACAGGACGACGAGCAGGAGAGGCGGCGGCGCCGCGGCCGGACGCGGGTC
NM_006161.2       GTTCCAGGGGCACAGGACGACGAGCAGGAGAGGCGGCGGCGCCGCGGCCGGACGCGGGTC
                  ************************************************************

HsCD00329431      CGCTCCGAGGCGCTGCTGCACTCGCTGCGCAGGAGCCGGCGCGTCAAGGCCAACGATCGC
NM_006161.2       CGCTCCGAGGCGCTGCTGCACTCGCTGCGCAGGAGCCGGCGCGTCAAGGCCAACGATCGC
                  ************************************************************

HsCD00329431      GAGCGCAACCGCATGCACAACTTGAACGCGGCCCTGGACGCACTGCGCAGCGTGCTGCCC
NM_006161.2       GAGCGCAACCGCATGCACAACTTGAACGCGGCCCTGGACGCACTGCGCAGCGTGCTGCCC
                  ************************************************************

HsCD00329431      TCGTTCCCCGACGACACCAAGCTCACCAAAATCGAGACGCTGCGCTTCGCCTACAACTAC
NM_006161.2       TCGTTCCCCGACGACACCAAGCTCACCAAAATCGAGACGCTGCGCTTCGCCTACAACTAC
                  ************************************************************

HsCD00329431      ATCTGGGCTCTGGCCGAGACACTGCGCCTGGCGGATCAAGGGCTGCCCGGAGGCGGTGCC
NM_006161.2       ATCTGGGCTCTGGCCGAGACACTGCGCCTGGCGGATCAAGGGCTGCCCGGAGGCGGTGCC
                  ************************************************************

HsCD00329431      CGGGAGCGCCTCCTGCCGCCGCAGTGCGTCCCCTGCCTGCCCGGTCCCCCAAGCCCCGCC
NM_006161.2       CGGGAGCGCCTCCTGCCGCCGCAGTGCGTCCCCTGCCTGCCCGGTCCCCCAAGCCCCGCC
                  ************************************************************

HsCD00329431      AGCGACGCGGAGTCCTGGGGCTCAGGTGCCGCCGCCGCCTCCCCGCTCTCTGACCCCAGT
NM_006161.2       AGCGACGCGGAGTCCTGGGGCTCAGGTGCCGCCGCCGCCTCCCCGCTCTCTGACCCCAGT
                  ************************************************************

HsCD00329431      AGCCCAGCCGCCTCCGAAGACTTCACCTACCGCCCCGGCGACCCTGTTTTCTCCTTCCCA
NM_006161.2       AGCCCAGCCGCCTCCGAAGACTTCACCTACCGCCCCGGCGACCCTGTTTTCTCCTTCCCA
                  ************************************************************

HsCD00329431      AGCCTGCCCAAAGACTTGCTCCACACAACGCCCTGTTTCATTCCTTACCACTTG
NM_006161.2       AGCCTGCCCAAAGACTTGCTCCACACAACGCCCTGTTTCATTCCTTACCACTAG
                  ****************************************************:*

Pathways

NCI : Regulation of nuclear beta catenin signaling and target gene transcription
WikiPathway : Neural Crest Differentiation

Protein

SMART domain : HLH : helix loop helix domain
UniProt : F1T0H3
UniProt : Q92886
HPRD : 03430

Clone

Cloning Information : 269166
HIP Master Clone ID : 152892
Original Clone ID : FLH269166.01L

Organism


TAX_ID : 9606
Species Specific ID: 4762

Genome

Chromosome : 5
Map Location : 5q23-q31
Ensembl : ENSG00000181965

Reagents

Labome : NEUROG1-antibody