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UBB (Homo sapiens) in pDNR-Dual (Creator donor/master vector)

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Explanation of Terms


Gene: Gene Symbol:  UBB
Gene Name:  ubiquitin B
Sequence              Map: pDNR-Dual_with_human_insert.pdf
Original Clone ID: FLH021788.01X
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pDNR-Dual               Format:  CLOSED
Source: HIP
Description: None
Comments: None
Mutation/
Discrepancy :
No / Yes
Publications: None
Authors: HIP
HsCD00000332

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 690nts         Open reading frame : 1 to 690
Reference Sequence Alignment

ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT
GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG
CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAAC
ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTC
GTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAA
AATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTCATC
TTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAG
TCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTG
ACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCC
AAGATCCAAGATAAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG
CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCGACCCTGCAC
CTGGTCCTGCGCCTGAGGGGTGGCTGTTAG


Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: Sequence Verification
Reference Sequence Annotations:
End on reference sequence 784
Start on reference sequence 95
Mutations:
None
Discrepancy:
a504g; t567c; g645a
                                

5' Linker Sequence:
5P GCGGCCGCATAACTTCGTATAGCATACATTATACGAAGTTATCAGTC
GACACC(ATG-GOI)

3' Linker Sequence:
5p (goi-stop)GGAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  ampicillin
Bacterial Selection Condition:  100 ug/mL ampicillin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pDNR-Dual

pDNR-Dual in advanced viewed

Synonyms: None
Sequencing Primer: Forward:  M13F
Reverse:  Unknown
Description: Recombinational donor/master vector with 6xHN tag ORF, T7 and M13 primer sites; ampicillin resistance; restriction enzyme cloning (into) and recombinational cloning (from).
Comments: The position of features were detemined for the empty form of the vector, which is described in detail on the BD/Clontech website. Subcloning into the MCS was performed using the infusion reaction strategy and some restriction sites in the MCS may be lost after an insert is added.
Size (bp): 4938
Parent Vector: None
Empty Vector: None
Properties: Creator, donor (entry), loxP, multiple cloning site, recombinational cloning, with tag/fusion/marker
Author Name: BD Biosciences Clontech
Publications: None
Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
MCS MCS restriction enzyme-type multiple cloning site 45 129
bacterial origin ColE1 ColE1 (pUC-type) origin of replication 4111 4574
negative selection marker SacB SacB negative selection marker gene (sucrose sensitivity) 1057 2972
primer site M13 primer M13 primer sequencing site 4839 4855
primer site T7 primer T7 RNA Pol primer sequencing site 4865 4883
recombination site loxP site loxP recombination site 1015 1048
recombination site loxP site loxP recombination site 9 42
selectable marker CmR chloramphenicol resistance gene ORF (functional only after recombination of insert into vector with promoter) 986 327
selectable marker AmpR ampicillin resistance gene 3103 3963
splice donor site SD site splice donor site 132 136
tag HN 6xHN epitope tag 141 176

 

  • Gene
  • Pathways
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : UBB
Symbol Nomenclature : UBB
Designation : polyubiquitin B|polyubiquitin-B
Full Nomenclature : ubiquitin B
GENEID : 7314
GI : 61355409
GenBank Accession : AY888190
HGNC : 12463
MIM : 191339
Vega : OTTHUMG00000058987
Target GenBank: NM_018955

 

Reference Sequence Alignment

  

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         ATGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGT
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         GACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCAG
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         CAGAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGATGCAAATCTTC
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         GTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACCATCGAG
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         AACGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATC
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         TTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAG
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         TCTACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTG
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         ACTGGTAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCA
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         AAGATCCAAGATAAGGAAGGCATTCCTTCTGATCAGCAGAGGTTGATCTTTGCCGGAAAA
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         CAGCTGGAAGATGGTCGTACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCAC
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         CTGGTACTCCGTCTCAGAGGTGGGATGCAAATCTTCGTGAAGACACTCACTGGCAAGACC
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         ATCACCCTTGAGGTCGAGCCCAGTGACACTATCGAGAACGTCAAAGCAAAGATCCAAGAC
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         AAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGAT
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         GGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGT
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         CTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACTCTCGAA
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         GTGGAGCCGAGTGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATC
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         CCTCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACCCTG
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         TCTGACTACAACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGAGGTGGG
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACTCTCGAGGTGGAGCCGAGT
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------------------
NM_001281720.1      ------------------------------------------------------------
NM_001281718.1      ------------------------------------------------------------
NM_001281719.1      ------------------------------------------------------------
NM_021009.5         CAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC
NM_001281717.1      ------------------------------------------------------------
NM_001281716.1      ------------------------------------------------------------
NM_018955.3         ------------------------------------------------------------
                                                                                

HsCD00000332        ------------------------------------------------ATGCAGATCTTC
NM_001281720.1      ------------------------------------------------ATGCAGATCTTC
NM_001281718.1      ------------------------------------------------ATGCAGATCTTC
NM_001281719.1      ------------------------------------------------ATGCAGATCTTC
NM_021009.5         ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGTCTTAGAGGTGGGATGCAGATCTTC
NM_001281717.1      ------------------------------------------------ATGCAGATCTTC
NM_001281716.1      ------------------------------------------------ATGCAGATCTTC
NM_018955.3         ------------------------------------------------ATGCAGATCTTC
                                                                    ************

HsCD00000332        GTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAA
NM_001281720.1      GTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAA
NM_001281718.1      GTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAA
NM_001281719.1      GTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAA
NM_021009.5         GTGAAGACCCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCGAGTGACACCATTGAG
NM_001281717.1      GTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAA
NM_001281716.1      GTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAA
NM_018955.3         GTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAA
                    *****.***** ** ** *********** ** **.******** *********** **.

HsCD00000332        AATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATC
NM_001281720.1      AATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATC
NM_001281718.1      AATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATC
NM_001281719.1      AATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATC
NM_021009.5         AATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATC
NM_001281717.1      AATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATC
NM_001281716.1      AATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATC
NM_018955.3         AATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATC
                    ***** *****.********.** *********** ** ** ************ * ***

HsCD00000332        TTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCCAGAAGGAG
NM_001281720.1      TTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCCAGAAGGAG
NM_001281718.1      TTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCCAGAAGGAG
NM_001281719.1      TTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCCAGAAGGAG
NM_021009.5         TTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAG
NM_001281717.1      TTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCCAGAAGGAG
NM_001281716.1      TTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCCAGAAGGAG
NM_018955.3         TTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCCAGAAGGAG
                    *****:** **.**************.** ** ** ********************.***

HsCD00000332        TCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTG
NM_001281720.1      TCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTG
NM_001281718.1      TCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTG
NM_001281719.1      TCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTG
NM_021009.5         TCCACCCTGCACCTGGTGCTCCGTCTTAGAGGTGGGATGCAGATCTTCGTGAAGACCCTG
NM_001281717.1      TCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTG
NM_001281716.1      TCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTG
NM_018955.3         TCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTG
                    ** ************** ** ***** ******** ************************

HsCD00000332        ACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCC
NM_001281720.1      ACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCC
NM_001281718.1      ACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCC
NM_001281719.1      ACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCC
NM_021009.5         ACTGGTAAGACCATCACTCTCGAAGTGGAGCCGAGTGACACCATTGAGAATGTCAAGGCA
NM_001281717.1      ACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCC
NM_001281716.1      ACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCC
NM_018955.3         ACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCC
                    ** ** *********** ** *********** *********** **.***** *****.

HsCD00000332        AAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG
NM_001281720.1      AAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG
NM_001281718.1      AAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG
NM_001281719.1      AAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG
NM_021009.5         AAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATCTTTGCTGGGAAA
NM_001281717.1      AAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG
NM_001281716.1      AAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG
NM_018955.3         AAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAG
                    ********.** **.************** ************ * ********:** **.

HsCD00000332        CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTGCAC
NM_001281720.1      CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTGCAC
NM_001281718.1      CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTGCAC
NM_001281719.1      CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTGCAC
NM_021009.5         CAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCCTGCAC
NM_001281717.1      CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTGCAC
NM_001281716.1      CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTGCAC
NM_018955.3         CAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTGCAC
                    **************.***** ** ********************.***** *********

HsCD00000332        CTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACC
NM_001281720.1      CTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACC
NM_001281718.1      CTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACC
NM_001281719.1      CTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACC
NM_021009.5         CTGGTGCTCCGTCTCAGAGGTGGGATGCAAATCTTCGTGAAGACCCTGACTGGTAAGACC
NM_001281717.1      CTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACC
NM_001281716.1      CTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACC
NM_018955.3         CTGGTCCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACC
                    ***** ** ***** ******** *****.******************** ** ******

HsCD00000332        ATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGAT
NM_001281720.1      ATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGAT
NM_001281718.1      ATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGAT
NM_001281719.1      ATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGAT
NM_021009.5         ATCACCCTCGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATCCAAGAT
NM_001281717.1      ATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGAT
NM_001281716.1      ATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGAT
NM_018955.3         ATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGAT
                    ***** ** **************************.***** *****.************

HsCD00000332        AAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGAT
NM_001281720.1      AAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGAT
NM_001281718.1      AAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGAT
NM_001281719.1      AAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGAT
NM_021009.5         AAGGAAGGCATCCCTCCTGATCAGCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGAT
NM_001281717.1      AAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGAT
NM_001281716.1      AAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGAT
NM_018955.3         AAAGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGAT
                    **.*********** ** ** ********* * ********:** **.************

HsCD00000332        GGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGC
NM_001281720.1      GGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGC
NM_001281718.1      GGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGC
NM_001281719.1      GGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGC
NM_021009.5         GGACGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGC
NM_001281717.1      GGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGC
NM_001281716.1      GGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGC
NM_018955.3         GGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGC
                    **.***** ** ************************** ** ****** ***********

HsCD00000332        CTGAGGGGTGGCTGTTAG
NM_001281720.1      CTGAGGGGTGGCTGTTAA
NM_001281718.1      CTGAGGGGTGGCTGTTAA
NM_001281719.1      CTGAGGGGTGGCTGTTAA
NM_021009.5         TTGAGGGGGGGTGTCTAA
NM_001281717.1      CTGAGGGGTGGCTGTTAA
NM_001281716.1      CTGAGGGGTGGCTGTTAA
NM_018955.3         CTGAGGGGTGGCTGTTAA
                     ******* **    **.

Pathways

Reactome : APC-Cdc20 mediated degradation of Nek2A
Reactome : APC/C-mediated degradation of cell cycle proteins
Reactome : APC/C:Cdc20 mediated degradation of Cyclin B
Reactome : APC/C:Cdc20 mediated degradation of Securin
Reactome : APC/C:Cdc20 mediated degradation of mitotic proteins
Reactome : APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1
Reactome : AUF1 (hnRNP D0) destabilizes mRNA
Reactome : Activated NOTCH1 Transmits Signal to the Nucleus
Reactome : Activated TLR4 signalling
Reactome : Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins
Reactome : Activation of IRF3/IRF7 mediated by TBK1/IKK epsilon
Reactome : Activation of NF-kappaB in B cells
Reactome : Adaptive Immune System
Reactome : Antigen processing-Cross presentation
Reactome : Antigen processing: Ubiquitination & Proteasome degradation
Reactome : Antiviral mechanism by IFN-stimulated genes
Reactome : Apoptosis
Reactome : Assembly Of The HIV Virion
Reactome : Assembly of the pre-replicative complex
Reactome : Association of licensing factors with the pre-replicative complex
Reactome : Asymmetric localization of PCP proteins
Reactome : Attenuation phase
Reactome : Autodegradation of Cdh1 by Cdh1:APC/C
Reactome : Autodegradation of the E3 ubiquitin ligase COP1
Reactome : Budding and maturation of HIV virion
Reactome : CDK-mediated phosphorylation and removal of Cdc6
Reactome : CDT1 association with the CDC6:ORC:origin complex
Reactome : Cdc20:Phospho-APC/C mediated degradation of Cyclin A
Reactome : Cell Cycle
Reactome : Cell Cycle Checkpoints
Reactome : Cell Cycle, Mitotic
Reactome : Cell death signalling via NRAGE, NRIF and NADE
Reactome : Cellular Senescence
Reactome : Cellular response to heat stress
Reactome : Cellular response to hypoxia
Reactome : Cellular responses to stress
Reactome : Circadian Clock
Reactome : Class I MHC mediated antigen processing & presentation
Reactome : Constitutive Signaling by NOTCH1 HD Domain Mutants
Reactome : Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
Reactome : Constitutive Signaling by NOTCH1 PEST Domain Mutants
Reactome : Cyclin A:Cdk2-associated events at S phase entry
Reactome : Cyclin D associated events in G1
Reactome : Cyclin E associated events during G1/S transition
Reactome : Cytokine Signaling in Immune system
Reactome : Cytosolic sensors of pathogen-associated DNA
Reactome : DNA Repair
Reactome : DNA Replication
Reactome : DNA Replication Pre-Initiation
Reactome : Disease
Reactome : Downregulation of ERBB2:ERBB3 signaling
Reactome : Downregulation of ERBB4 signaling
Reactome : Downregulation of SMAD2/3:SMAD4 transcriptional activity
Reactome : Downregulation of TGF-beta receptor signaling
Reactome : Downstream signaling events of B Cell Receptor (BCR)
Reactome : EGFR downregulation
Reactome : ER-Phagosome pathway
Reactome : Endosomal Sorting Complex Required For Transport (ESCRT)
Reactome : FBXW7 Mutants and NOTCH1 in Cancer
Reactome : Fanconi Anemia pathway
Reactome : G1 Phase
Reactome : G1/S DNA Damage Checkpoints
Reactome : G1/S Transition
Reactome : G2/M Transition
Reactome : Gene Expression
Reactome : Generic Transcription Pathway
Reactome : Glucose metabolism
Reactome : Glycogen storage diseases
Reactome : Glycogen synthesis
Reactome : HIV Infection
Reactome : HIV Life Cycle
Reactome : HSF1 activation
Reactome : HSF1-dependent transactivation
Reactome : Host Interactions of HIV factors
Reactome : IKK complex recruitment mediated by RIP1
Reactome : IRAK2 mediated activation of TAK1 complex
Reactome : IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation
Reactome : ISG15 antiviral mechanism
Reactome : Immune System
Reactome : Innate Immune System
Reactome : Interferon Signaling
Reactome : Ion channel transport
Reactome : Late Phase of HIV Life Cycle
Reactome : Loss of Function of SMAD2/3 in Cancer
Reactome : Loss of Function of SMAD4 in Cancer
Reactome : Loss of Function of TGFBR1 in Cancer
Reactome : Loss of Function of TGFBR2 in Cancer
Reactome : M Phase
Reactome : M/G1 Transition
Reactome : Membrane Trafficking
Reactome : Membrane binding and targetting of GAG proteins
Reactome : Metabolism
Reactome : Metabolism of RNA
Reactome : Metabolism of carbohydrates
Reactome : Metabolism of mRNA
Reactome : Mitotic Anaphase
Reactome : Mitotic G1-G1/S phases
Reactome : Mitotic G2-G2/M phases
Reactome : Mitotic M-M/G1 phases
Reactome : Mitotic Metaphase and Anaphase
Reactome : MyD88 cascade initiated on plasma membrane
Reactome : MyD88 dependent cascade initiated on endosome
Reactome : MyD88-independent cascade
Reactome : MyD88:Mal cascade initiated on plasma membrane
Reactome : Myoclonic epilepsy of Lafora
Reactome : NF-kB is activated and signals survival
Reactome : NOTCH1 Intracellular Domain Regulates Transcription
Reactome : NOTCH2 Activation and Transmission of Signal to the Nucleus
Reactome : NRIF signals cell death from the nucleus
Reactome : Negative regulation of FGFR signaling
Reactome : Negative regulators of RIG-I/MDA5 signaling
Reactome : Oncogene Induced Senescence
Reactome : Orc1 removal from chromatin
Reactome : Oxidative Stress Induced Senescence
Reactome : Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha
Reactome : PCP/CE pathway
Reactome : RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways
Reactome : Receptor-ligand binding initiates the second proteolytic cleavage of Notch receptor
Reactome : Regulation of APC/C activators between G1/S and early anaphase
Reactome : Regulation of Apoptosis
Reactome : Regulation of DNA replication
Reactome : Regulation of HSF1-mediated heat shock response
Reactome : Regulation of Hypoxia-inducible Factor (HIF) by oxygen
Reactome : Regulation of PLK1 Activity at G2/M Transition
Reactome : Regulation of activated PAK-2p34 by proteasome mediated degradation
Reactome : Regulation of innate immune responses to cytosolic DNA
Reactome : Regulation of mRNA stability by proteins that bind AU-rich elements
Reactome : Regulation of mitotic cell cycle
Reactome : Regulation of the Fanconi anemia pathway
Reactome : Removal of licensing factors from origins
Reactome : S Phase
Reactome : SCF(Skp2)-mediated degradation of p27/p21
Reactome : SCF-beta-TrCP mediated degradation of Emi1
Reactome : SMAD2/3 MH2 Domain Mutants in Cancer
Reactome : SMAD2/3 Phosphorylation Motif Mutants in Cancer
Reactome : SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
Reactome : SMAD4 MH2 Domain Mutants in Cancer
Reactome : Senescence-Associated Secretory Phenotype (SASP)
Reactome : Separation of Sister Chromatids
Reactome : Signal Transduction
Reactome : Signaling by EGFR
Reactome : Signaling by EGFR in Cancer
Reactome : Signaling by ERBB2
Reactome : Signaling by ERBB4
Reactome : Signaling by FGFR
Reactome : Signaling by FGFR in disease
Reactome : Signaling by NOTCH
Reactome : Signaling by NOTCH1
Reactome : Signaling by NOTCH1 HD Domain Mutants in Cancer
Reactome : Signaling by NOTCH1 HD+PEST Domain Mutants in Cancer
Reactome : Signaling by NOTCH1 PEST Domain Mutants in Cancer
Reactome : Signaling by NOTCH1 in Cancer
Reactome : Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant
Reactome : Signaling by NOTCH2
Reactome : Signaling by TGF-beta Receptor Complex
Reactome : Signaling by TGF-beta Receptor Complex in Cancer
Reactome : Signaling by Wnt
Reactome : Signaling by constitutively active EGFR
Reactome : Signaling by the B Cell Receptor (BCR)
Reactome : Signalling by NGF
Reactome : Spry regulation of FGF signaling
Reactome : Stabilization of p53
Reactome : Stimuli-sensing channels
Reactome : Switching of origins to a post-replicative state
Reactome : Synthesis of DNA
Reactome : TCF dependent signaling in response to WNT
Reactome : TGF-beta receptor signaling activates SMADs
Reactome : TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)
Reactome : TGFBR1 KD Mutants in Cancer
Reactome : TGFBR1 LBD Mutants in Cancer
Reactome : TGFBR2 Kinase Domain Mutants in Cancer
Reactome : TGFBR2 MSI Frameshift Mutants in Cancer
Reactome : TRAF6 Mediated Induction of proinflammatory cytokines
Reactome : TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
Reactome : TRAF6 mediated induction of TAK1 complex
Reactome : TRIF-mediated TLR3/TLR4 signaling
Reactome : Toll Like Receptor 10 (TLR10) Cascade
Reactome : Toll Like Receptor 2 (TLR2) Cascade
Reactome : Toll Like Receptor 3 (TLR3) Cascade
Reactome : Toll Like Receptor 4 (TLR4) Cascade
Reactome : Toll Like Receptor 5 (TLR5) Cascade
Reactome : Toll Like Receptor 7/8 (TLR7/8) Cascade
Reactome : Toll Like Receptor 9 (TLR9) Cascade
Reactome : Toll Like Receptor TLR1:TLR2 Cascade
Reactome : Toll Like Receptor TLR6:TLR2 Cascade
Reactome : Toll-Like Receptors Cascades
Reactome : Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer
Reactome : Transmembrane transport of small molecules
Reactome : Ubiquitin Mediated Degradation of Phosphorylated Cdc25A
Reactome : Ubiquitin-dependent degradation of Cyclin D
Reactome : Ubiquitin-dependent degradation of Cyclin D1
Reactome : Vif-mediated degradation of APOBEC3G
Reactome : Vpu mediated degradation of CD4
Reactome : beta-catenin independent WNT signaling
Reactome : deactivation of the beta-catenin transactivating complex
Reactome : degradation of AXIN
Reactome : degradation of DVL
Reactome : p53-Dependent G1 DNA Damage Response
Reactome : p53-Dependent G1/S DNA damage checkpoint
Reactome : p53-Independent DNA Damage Response
Reactome : p53-Independent G1/S DNA damage checkpoint
Reactome : p75 NTR receptor-mediated signalling
Reactome : p75NTR recruits signalling complexes
Reactome : p75NTR signals via NF-kB
Reactome : regulation of FZD by ubiquitination
WikiPathway : Proteasome Degradation

Protein

SMART domain : UBQ : Ubiquitin homologues
UniProt : Q5U5U6
UniProt : P0CG47
HPRD : 06771

Clone

Cloning Information : 21788
HIP Master Clone ID : 40348
Original Clone ID : FLH021788.01X

Organism


TAX_ID : 9606
Species Specific ID: 7314

Genome

Chromosome : 17
Map Location : 17p12-p11.2
Ensembl : ENSG00000170315

Reagents

Labome : ubiquitin-antibody