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LYSMD1 (Homo sapiens) in pANT7_cGST (GST-tagged in vitro expression vector)

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Explanation of Terms


Gene: Gene Symbol:  LYSMD1
Gene Name:  LysM, putative peptidoglycan-binding, domain containing 1
Sequence              Map: pANT7_cGST.doc
Original Clone ID: None
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pANT7_cGST               Format:  FUSION
Source: Center for Personalized Diagnostics
Description: None
Comments: generated from ORFeome entry clone (IMAGE:100070780)
Mutation/
Discrepancy :
No / No
Publications: None
Authors: Center for Personalized Diagnostics
HsCD00356934

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 681nts         Open reading frame : 1 to 681
Reference Sequence Alignment

ATGGCTTCCCCGTCTAGACAGCCCCCGCCAGGGGGGTCAGGACTGCTTCAAGGGAGCCGG
GCTCGTTCATATGGAAGCCTGGTGCAATCGGCCTGCTCCCCAGTGAGGGAAAGACGCCTG
GAGCATCAGTTGGAGCCCGGAGACACCCTGGCTGGACTAGCACTCAAATATGGGGTGACG
ATGGAACAGATTAAACGTGCAAACCGCCTTTATACTAATGACTCCATCTTCCTGAAGAAA
ACCCTCTACATCCCCATCCTGACAGAGCCCAGAGACCTGTTCAATGGTTTGGACTCTGAG
GAAGAGAAAGATGGAGAGGAAAAAGTACACCCAAGTAACAGTGAAGTTTGGCCACACTCA
ACTGAGAGGAAGAAACAAGAGACAGGAGCAGGACGTGCCAATGGTGAAGTCCTCCCCACA
CCTGGCCAGGAAACCCCCACGCCCATCCATGACCTCTCTGCCTCTGATTTCCTTAAGAAG
CTTGATTCACAGATCAGCCTGTCCAAGAAGGCTGCTGCTCAGAAGCTGAAAAAAGGGGAA
AATGGGGTACCTGGGGAGGATGCAGGTCTCCACCTGAGCTCCCCTTGGATGCAGCAACGA
GCAGTCCTAGGTCCTGTGCCGCTGACCCGTACCTCTCGGACCCGGACACTACGGGACCAG
GAGGATGAAATCTTCAAACTC


Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: Sequence Verification
Mutations:
None
Discrepancy:
None
5' Linker Sequence: None
3' Linker Sequence: None

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  ampicillin
Bacterial Selection Condition:  100 ug/mL ampicillin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pANT7_cGST

pANT7_cGST in advanced viewed

Synonyms: pANT7-cGST
Sequencing Primer: Forward:  NAP150
Reverse:  NAP138R
Description: with tag/fusion/marker assay, Gateway and reg, acceptor (destination), recombinational cloning clone, in vitro transcription expression with attR1 and NAP150 and ccdB and attR2 and GST and CmR and T7 and NAP138 and ColE and AmpR ampicillin resistance in bacterial
Comments: One in a series of pANT7 vectors made by A. Lau and N. Ramachandran for use with NAPPA arrays. Can be used for cell free expression of the gene insert using human IVTT from Thermo Fisher or rabbit reticulocyte systems
Size (bp): 5964
Parent Vector: None
Empty Vector: EvNO00023103
Properties: Gateway, acceptor (destination), in vitro transcription, recombinational cloning, with tag/fusion/marker
Author Name: Joshua LaBaer
Al Lau
Niroshan Ramachandran
Publications: PMID: 15232106
Title: Self-assembling protein microarrays

Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
bacterial origin ColE ColE1 bacterial origin of replication 3931 3249
death cassette ccdB ccdB death cassette present in 'empty vector' form only (replace with gene of interest) 1876 2085
primer NAP138 NAP138 reverse sequencing primer 5? TGTTTCGCCATTTATCACCTTC 3? 2405 2384
primer NAP150 Forward sequencing primer NAP150 5?-CCC ATT GTA TGG GAT CTG ATC-3? 388 408
promoter T7 T7 transcriptional start sequence 5940 5964
recombination site attR1 AttR1 site for recombination in empty vector 549 565
recombination site attR2 AttR2 site for recombination in empty vector 2236 2251
selectable marker CmR chloramphenicol resistance 782 1438
selectable marker AmpR ampicillin resistance gene 4688 4029
tag GST Glutathione transferase (GST) tag 2282 2950

 

  • Gene
  • Protein
  • Clone
  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : LYSMD1
Symbol Nomenclature : LYSMD1
SYNONYM : RP11-68I18.5
Designation : lysM and putative peptidoglycan-binding domain-containing protein 1
Full Nomenclature : LysM, putative peptidoglycan-binding, domain containing 1
GENEID : 388695
Locus Tag : SB145
GenBank Accession : 569179
HGNC : 32070
Vega : OTTHUMG00000012260
Target GenBank: HQ447451

 

Reference Sequence Alignment

  

HsCD00356934      ATGGCTTCCCCGTCTAGACAGCCCCCGCCAGGGGGGTCAGGACTGCTTCAAGGGAGCCGG
NM_212551.4       ATGGCTTCCCCGTCTAGACAGCCCCCGCCAGGGGGGTCAGGACTGCTTCAAGGGAGCCGG
                  ************************************************************

HsCD00356934      GCTCGTTCATATGGAAGCCTGGTGCAATCGGCCTGCTCCCCAGTGAGGGAAAGACGCCTG
NM_212551.4       GCTCGTTCATATGGAAGCCTGGTGCAATCGGCCTGCTCCCCAGTGAGGGAAAGACGCCTG
                  ************************************************************

HsCD00356934      GAGCATCAGTTGGAGCCCGGAGACACCCTGGCTGGACTAGCACTCAAATATGGGGTGACG
NM_212551.4       GAGCATCAGTTGGAGCCCGGAGACACCCTGGCTGGACTAGCACTCAAATATGGGGTGACG
                  ************************************************************

HsCD00356934      ATGGAACAGATTAAACGTGCAAACCGCCTTTATACTAATGACTCCATCTTCCTGAAGAAA
NM_212551.4       ATGGAACAGATTAAACGTGCAAACCGCCTTTATACTAATGACTCCATCTTCCTGAAGAAA
                  ************************************************************

HsCD00356934      ACCCTCTACATCCCCATCCTGACAGAGCCCAGAGACCTGTTCAATGGTTTGGACTCTGAG
NM_212551.4       ACCCTCTACATCCCCATCCTGACAGAGCCCAGAGACCTGTTCAATGGTTTGGACTCTGAG
                  ************************************************************

HsCD00356934      GAAGAGAAAGATGGAGAGGAAAAAGTACACCCAAGTAACAGTGAAGTTTGGCCACACTCA
NM_212551.4       GAAGAGAAAGATGGAGAGGAAAAAGTACACCCAAGTAACAGTGAAGTTTGGCCACACTCA
                  ************************************************************

HsCD00356934      ACTGAGAGGAAGAAACAAGAGACAGGAGCAGGACGTGCCAATGGTGAAGTCCTCCCCACA
NM_212551.4       ACTGAGAGGAAGAAACAAGAGACAGGAGCAGGACGTGCCAATGGTGAAGTCCTCCCCACA
                  ************************************************************

HsCD00356934      CCTGGCCAGGAAACCCCCACGCCCATCCATGACCTCTCTGCCTCTGATTTCCTTAAGAAG
NM_212551.4       CCTGGCCAGGAAACCCCCACGCCCATCCATGACCTCTCTGCCTCTGATTTCCTTAAGAAG
                  ************************************************************

HsCD00356934      CTTGATTCACAGATCAGCCTGTCCAAGAAGGCTGCTGCTCAGAAGCTGAAAAAAGGGGAA
NM_212551.4       CTTGATTCACAGATCAGCCTGTCCAAGAAGGCTGCTGCTCAGAAGCTGAAAAAAGGGGAA
                  ************************************************************

HsCD00356934      AATGGGGTACCTGGGGAGGATGCAGGTCTCCACCTGAGCTCCCCTTGGATGCAGCAACGA
NM_212551.4       AATGGGGTACCTGGGGAGGATGCAGGTCTCCACCTGAGCTCCCCTTGGATGCAGCAACGA
                  ************************************************************

HsCD00356934      GCAGTCCTAGGTCCTGTGCCGCTGACCCGTACCTCTCGGACCCGGACACTACGGGACCAG
NM_212551.4       GCAGTCCTAGGTCCTGTGCCGCTGACCCGTACCTCTCGGACCCGGACACTACGGGACCAG
                  ************************************************************

HsCD00356934      GAGGATGAAATCTTCAAACTC---
NM_212551.4       GAGGATGAAATCTTCAAACTCTGA
                  *********************   

Protein

SMART domain : LysM : Lysin motif
UniProt : Q96S90
HPRD : 18017

Clone

Cloning Information : 569179

Organism


TAX_ID : 9606
Species Specific ID: 388695

Genome

Chromosome : 1
Map Location : 1q21.3
Ensembl : ENSG00000163155

Reagents

Labome : LYSMD1-antibody