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SEC24D (Homo sapiens) in pDONR221 (Gateway donor/master vector)

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Explanation of Terms


Gene: Gene Symbol:  SEC24D
Gene Name:  SEC24 family member D
Sequence              Map: pDONR cofig.pdf
Original Clone ID: FLH170587.01L
Keyword: None
Species: Homo sapiens
Type: cDNA
Vector Name: pDONR221               Format:  FUSION
Source: HIP
Description: None
Comments: None
Mutation/
Discrepancy :
No / No
Publications: PMID: 23430259
Title: Role of C-terminal Membrane-Proximal Basic Residues in Cell Surface Trafficking of HIV Coreceptor GPR15
PMID: 23430259
Title: Role of C-terminal Membrane-Proximal Basic Residues in Cell Surface Trafficking of HIV Coreceptor GPR15
Authors: HIP
HsCD00040142

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AVAILABLE
No restriction
Special MTA: None

 

Insert sequence: 3102nts         Open reading frame : 1 to 3102
Reference Sequence Alignment

ATGAGTCAACAAGGTTACGTGGCTACACCTCCGTATTCTCAGCCTCAGCCTGGAATAGGC
CTTTCTCCACCTCATTATGGGCACTATGGGGATCCGTCGCACACAGCATCTCCAACAGGT
ATGATGAAGCCAGCAGGGCCTTTGGGGGCCACCGCCACTAGGGGAATGTTGCCTCCGGGT
CCCCCACCTCCTGGACCCCATCAGTTTGGTCAGAATGGAGCTCATGCCACTGGTCACCCT
CCCCAAAGATTTCCAGGCCCTCCACCTGTCAACAATGTGGCATCCTCACATGCACCATAC
CAACCCTCTGCACAATCTTCTTATCCAGGTCCTATATCCACTTCATCTGTCACCCAGCTG
GGCAGCCAGCTCAGTGCTATGCAAATCAACAGCTATGGTTCAGGCATGGCTCCTCCAAGC
CAGGGACCCCCTGGCCCTCTGTCAGCCACATCATTGCAGACTCCTCCACGACCTCCACAG
CCTTCCATTTTGCAGCCTGGATCTCAAGTTCTTCCACCACCACCCACCACACTCAATGGT
CCTGGTGCCTCACCTTTGCCTCTACCAATGTACAGACCAGATGGGCTCTCTGGGCCTCCT
CCTCCAAATGCCCAGTACCAGCCCCCACCTCTTCCAGGCCAGACCTTGGGTGCTGGATAT
CCTCCGCAGCAGGCAGCCAACTCTGGTCCCCAGATGGCAGGCGCACAACTGTCTTACCCA
GGAGGCTTCCCTGGAGGTCCTGCACAGATGGCTGGTCCGCCACAGCCCCAGAAGAAGCTG
GATCCTGACTCTATCCCTAGCCCAATCCAGGTGATTGAGAATGATAGAGCCAGCAGAGGA
GGACAAGTTTATGCCACCAACACCAGAGGCCAGATCCCTCCCCTGGTCACTACAGATTGC
ATGATACAAGACCAAGGAAATGCCAGTCCTCGATTCATCCGTTGTACAACATACTGTTTT
CCATGCACGTCAGATATGGCTAAGCAAGCTCAGATTCCATTAGCTGCTGTCATCAAGCCC
TTTGCCACCATTCCTTCAAATGAGAGTCCCCTTTACTTGGTAAATCACGGCGAGAGTGGA
CCAGTCAGATGCAACAGGTGCAAGGCCTACATGTGCCCATTTATGCAGTTCATCGAAGGA
GGAAGGAGATATCAGTGTGGATTTTGCAACTGTGTGAATGATGTTCCACCATTCTATTTC
CAACATCTGGACCACATTGGAAGAAGACTGGACCACTATGAGAAACCAGAGTTATCTCTA
GGATCTTATGAATATGTTGCCACTTTGGATTATTGCAGAAAGAGTAAGCCTCCCAACCCA
CCAGCCTTTATCTTCATGATTGATGTTTCATATAGTAACATAAAGAATGGACTTGTCAAG
CTCATATGTGAAGAACTGAAGACCATGCTGGAAAAAATTCCAAAGGAAGAGCAAGAAGAG
ACGTCTGCAATTCGAGTGGGTTTTATCACATATAACAAAGTTCTCCATTTCTTTAATGTG
AAGAGTAATCTGGCCCAGCCTCAGATGATGGTGGTGACTGATGTTGGAGAAGTCTTTGTT
CCTTTGTTGGATGGTTTCCTTGTCAACTATCAAGAATCCCAATCTGTGATTCATAATTTG
TTGGACCAGATTCCAGACATGTTTGCAGACTCTAATGAAAATGAGACTGTCTTTGCTCCT
GTCATCCAGGCTGGCATGGAAGCACTAAAGGCAGCAGACTGTCCTGGGAAGCTGTTCATC
TTCCATTCTTCCTTGCCAACTGCTGAAGCACCAGGGAAGCTCAAAAACAGAGATGACAAA
AAACTGGTTAATACAGACAAAGAGAAGATACTTTTCCAGCCCCAAACAAATGTCTATGAC
TCATTGGCCAAGGACTGCGTGGCTCACGGCTGCTCTGTGACACTCTTCCTCTTTCCTAGT
CAGTATGTGGACGTGGCCTCGCTGGGGCTGGTTCCTCAGCTCACTGGAGGAACCCTTTAC
AAATACAACAATTTCCAGATGCACTTGGATAGACAACAATTTTTGAACGACCTCAGAAAT
GATATTGAAAAGAAAATAGGCTTTGATGCTATTATGAGGGTTCGTACCAGCACAGGTTTC
AGAGCCACTGATTTCTTTGGTGGAATCTTGATGAACAACACCACCGATGTAGAAATGGCT
GCCATCGATTGTGACAAGGCAGTGACCGTGGAGTTCAAGCACGATGACAAACTCAGTGAA
GACAGTGGAGCCTTAATCCAGTGTGCTGTGCTTTACACGACAATCAGTGGTCAAAGAAGA
CTTCGGATTCACAATCTTGGCTTAAACTGCAGCTCTCAGCTAGCTGATCTTTATAAGAGC
TGTGAGACAGATGCTCTTATCAACTTCTTTGCCAAGTCAGCTTTTAAAGCAGTTCTTCAC
CAGCCTTTGAAGGTCATCCGGGAAATTCTAGTTAATCAGACTGCCCATATGTTGGCATGT
TACCGGAAGAATTGTGCAAGTCCTTCTGCAGCAAGCCAGCTTATTCTACCAGATTCCATG
AAAGTATTGCCAGTGTACATGAATTGCTTGTTGAAAAACTGTGTACTACTCAGCAGACCA
GAGATCTCAACTGATGAACGAGCATACCAGAGACAGCTGGTCATGACCATGGGTGTGGCT
GACTCTCAGCTTTTCTTCTACCCACAACTTCTGCCCATACACACGTTAGATGTCAAGAGT
ACAATGTTACCTGCTGCCGTTCGTTGCTCTGAGTCCCGTCTTTCAGAAGAAGGAATATTC
TTACTGGCTAATGGTCTACACATGTTCCTGTGGTTGGGAGTAAGCAGCCCACCAGAACTG
ATCCAAGGAATATTTAATGTGCCATCTTTTGCACATATCAACACAGATATGACATTGCTG
CCTGAAGTGGGAAACCCATACTCTCAACAACTCAGAATGATAATGGGTATTATCCAACAA
AAGAGGCCATATTCAATGAAGCTCACAATTGTAAAGCAGCGAGAACAACCAGAAATGGTT
TTCCGACAGTTCCTGGTAGAAGACAAAGGACTTTACGGAGGCTCTTCTTATGTGGATTTC
CTTTGTTGTGTTCACAAGGAGATCTGTCAGCTGCTTAATTTG


Coding Sequence Details
Insert Sequence Verified?: Y Verification Method: Sequence Verification
Reference Sequence Annotations:
End on reference sequence 3321
Start on reference sequence 220
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
5p GTACAAAAAAGCAGGCTCCACC(atg-goi)

3' Linker Sequence:
5p (goi-stop)GACCCAGCTTTCTTGTAC

 

 Recommended Growth Condition:

Distributed in bacterial strain : DH5-alpha T1 phage resistant
Antibiotic Selection: Host Type:  bacterial    Marker:  kanamycin
Bacterial Selection Condition:  50ug/mL kanamycin
Growth Condition:  Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:  Conditions for Gateway-type vectors in recombined (with insert) form and other kanamycin resistant vectors.
Protein Expression Results: None
Recommended expression in: Not Applicable
       DyNA Vector Map

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Vector Name: pDONR221

pDONR221 in advanced viewed

Synonyms: None
Sequencing Primer: Forward:  U19
Reverse:  AttP2
Description: Recombinational donor/master vector with M13 F and R primer sites; kanamycin resistance; recombinational cloning.
Comments: The position of features were determined for the unrecombined (empty) form of the vector, which is described in detail on the Invitrogen website.
Size (bp): 4762
Parent Vector: None
Empty Vector: None
Properties: Gateway, donor (entry), recombinational cloning
Author Name: Invitrogen
Publications: None
Vector Map:         Vector Sequence:
Sequence:

 



Vector Features:

Type Name Description Start Position End Position
bacterial origin ColE1 ColE1 (pUC-type) origin of replication 4086 4759
negative selection marker ccdB ccdB negative selection gene (death cassette), LOST in recombined (with insert) form 1502 1197
primer site M13 forward primer M13 Forward priming site 537 552
primer site M13 reverse primer M13 Reverse priming site 3027 3034
recombination site attP1 attP recombination site 1 LOST in recombined (with insert) form 570 801
recombination site attL1 attL recombination site 1 present in recombined (with insert) form only, position is approximate 570 801
recombination site attL2 attL recombination site 2 present in recombined (with insert) form only, position is approximate 2985 2754
recombination site attP2 attP recombination site 2 LOST in recombined (with insert) form 2985 2754
selectable marker CmR chloramphenicol resistance gene, LOST in recombined (with insert) form 2506 1847
selectable marker KanR kanamycin resistance gene 3156 3965
trxn termination sequence rrnB T2 rrnB T2 transcription termination sequence 295 268
trxn termination sequence rrnB T1 rrnB T1 transcription termination sequence 470 427

 

  • Gene
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  • Protein
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  • Organism
  • Genome
  • Reagents

Gene

 

Gene Symbol : SEC24D
Symbol Nomenclature : SEC24D
Designation : SEC24 family, member D|SEC24 related gene family, member D|SEC24-related protein D|protein transport protein Sec24D
Full Nomenclature : SEC24 family member D
GENEID : 9871
HGNC : 10706
MIM : 607186
Vega : OTTHUMG00000132957
Target GenBank: BC035761

 

Reference Sequence Alignment

  

HsCD00040142        ATGAGTCAACAAGGTTACGTGGCTACACCTCCGTATTCTCAGCCTCAGCCTGGAATAGGC
NM_014822.2         ATGAGTCAACAAGGTTACGTGGCTACACCTCCGTATTCTCAGCCTCAGCCTGGAATAGGC
XM_005263379.1      ATGAGTCAACAAGGTTACGTGGCTACACCTCCGTATTCTCAGCCTCAGCCTGGAATAGGC
XM_005263378.1      ATGAGTCAACAAGGTTACGTGGCTACACCTCCGTATTCTCAGCCTCAGCCTGGAATAGGC
                    ************************************************************

HsCD00040142        CTTTCTCCACCTCATTATGGGCACTATGGGGATCCGTCGCACACAGCATCTCCAACAGGT
NM_014822.2         CTTTCTCCACCTCATTATGGGCACTATGGGGATCCGTCGCACACAGCATCTCCAACAGGT
XM_005263379.1      CTTTCTCCACCTCATTATGGGCACTATGGGGATCCGTCGCACACAGCATCTCCAACAGGT
XM_005263378.1      CTTTCTCCACCTCATTATGGGCACTATGGGGATCCGTCGCACACAGCATCTCCAACAGGT
                    ************************************************************

HsCD00040142        ATGATGAAGCCAGCAGGGCCTTTGGGGGCCACCGCCACTAGGGGAATGTTGCCTCCGGGT
NM_014822.2         ATGATGAAGCCAGCAGGGCCTTTGGGGGCCACCGCCACTAGGGGAATGTTGCCTCCGGGT
XM_005263379.1      ATGATGAAGCCAGCAGGGCCTTTGGGGGCCACCGCCACTAGGGGAATGTTGCCTCCGGGT
XM_005263378.1      ATGATGAAGCCAGCAGGGCCTTTGGGGGCCACCGCCACTAGGGGAATGTTGCCTCCGGGT
                    ************************************************************

HsCD00040142        CCCCCACCTCCTGGACCCCATCAGTTTGGTCAGAATGGAGCTCATGCCACTGGTCACCCT
NM_014822.2         CCCCCACCTCCTGGACCCCATCAGTTTGGTCAGAATGGAGCTCATGCCACTGGTCACCCT
XM_005263379.1      CCCCCACCTCCTGGACCCCATCAGTTTGGTCAGAATGGAGCTCATGCCACTGGTCACCCT
XM_005263378.1      CCCCCACCTCCTGGACCCCATCAGTTTGGTCAGAATGGAGCTCATGCCACTGGTCACCCT
                    ************************************************************

HsCD00040142        CCCCAAAGATTTCCAGGCCCTCCACCTGTCAACAATGTGGCATCCTCACATGCACCATAC
NM_014822.2         CCCCAAAGATTTCCAGGCCCTCCACCTGTCAACAATGTGGCATCCTCACATGCACCATAC
XM_005263379.1      CCCCAAAGATTTCCAGGCCCTCCACCTGTCAACAATGTGGCATCCTCACATGCACCATAC
XM_005263378.1      CCCCAAAGATTTCCAGGCCCTCCACCTGTCAACAATGTGGCATCCTCACATGCACCATAC
                    ************************************************************

HsCD00040142        CAACCCTCTGCACAATCTTCTTATCCAGGTCCTATATCCACTTCATCTGTCACCCAGCTG
NM_014822.2         CAACCCTCTGCACAATCTTCTTATCCAGGTCCTATATCCACTTCATCTGTCACCCAGCTG
XM_005263379.1      CAACCCTCTGCACAATCTTCTTATCCAGGTCCTATATCCACTTCATCTGTCACCCAGCTG
XM_005263378.1      CAACCCTCTGCACAATCTTCTTATCCAGGTCCTATATCCACTTCATCTGTCACCCAGCTG
                    ************************************************************

HsCD00040142        GGCAGCCAGCTCAGTGCTATGCAAATCAACAGCTATGGTTCAGGCATGGCTCCTCCAAGC
NM_014822.2         GGCAGCCAGCTCAGTGCTATGCAAATCAACAGCTATGGTTCAGGCATGGCTCCTCCAAGC
XM_005263379.1      GGCAGCCAGCTCAGTGCTATGCAAATCAACAGCTATGGTTCAGGCATGGCTCCTCCAAGC
XM_005263378.1      GGCAGCCAGCTCAGTGCTATGCAAATCAACAGCTATGGTTCAGGCATGGCTCCTCCAAGC
                    ************************************************************

HsCD00040142        CAGGGACCCCCTGGCCCTCTGTCAGCCACATCATTGCAGACTCCTCCACGACCTCCACAG
NM_014822.2         CAGGGACCCCCTGGCCCTCTGTCAGCCACATCATTGCAGACTCCTCCACGACCTCCACAG
XM_005263379.1      CAGGGACCCCCTGGCCCTCTGTCAGCCACATCATTGCAGACTCCTCCACGACCTCCACAG
XM_005263378.1      CAGGGACCCCCTGGCCCTCTGTCAGCCACATCATTGCAGACTCCTCCACGACCTCCACAG
                    ************************************************************

HsCD00040142        CCTTCCATTTTGCAGCCTGGATCTCAAGTTCTTCCACCACCACCCACCACACTCAATGGT
NM_014822.2         CCTTCCATTTTGCAGCCTGGATCTCAAGTTCTTCCACCACCACCCACCACACTCAATGGT
XM_005263379.1      CCTTCCATTTTGCAGCCTGGATCTCAAGTTCTTCCACCACCACCCACCACACTCAATGGT
XM_005263378.1      CCTTCCATTTTGCAGCCTGGATCTCAAGTTCTTCCACCACCACCCACCACACTCAATGGT
                    ************************************************************

HsCD00040142        CCTGGTGCCTCACCTTTGCCTCTACCAATGTACAGACCAGATGGGCTCTCTGGGCCTCCT
NM_014822.2         CCTGGTGCCTCACCTTTGCCTCTACCAATGTACAGACCAGATGGGCTCTCTGGGCCTCCT
XM_005263379.1      CCTGGTGCCTCACCTTTGCCTCTACCAATGTACAGACCAGATGGGCTCTCTGGGCCTCCT
XM_005263378.1      CCTGGTGCCTCACCTTTGCCTCTACCAATGTACAGACCAGATGGGCTCTCTGGGCCTCCT
                    ************************************************************

HsCD00040142        CCTCCAAATGCCCAGTACCAGCCCCCACCTCTTCCAGGCCAGACCTTGGGTGCTGGATAT
NM_014822.2         CCTCCAAATGCCCAGTACCAGCCCCCACCTCTTCCAGGCCAGACCTTGGGTGCTGGATAT
XM_005263379.1      CCTCCAAATGCCCAGTACCAGCCCCCACCTCTTCCAGGCCAGACCTTGGGTGCTGGATAT
XM_005263378.1      CCTCCAAATGCCCAGTACCAGCCCCCACCTCTTCCAGGCCAGACCTTGGGTGCTGGATAT
                    ************************************************************

HsCD00040142        CCTCCGCAGCAGGCAGCCAACTCTGGTCCCCAGATGGCAGGCGCACAACTGTCTTACCCA
NM_014822.2         CCTCCGCAGCAG---GCCAACTCTGGTCCCCAGATGGCAGGCGCACAACTGTCTTACCCA
XM_005263379.1      CCTCCGCAGCAGGCAGCCAACTCTGGTCCCCAGATGGCAGGCGCACAACTGTCTTACCCA
XM_005263378.1      CCTCCGCAGCAGGCAGCCAACTCTGGTCCCCAGATGGCAGGCGCACAACTGTCTTACCCA
                    ************   *********************************************

HsCD00040142        GGAGGCTTCCCTGGAGGTCCTGCACAGATGGCTGGTCCGCCACAGCCCCAGAAGAAGCTG
NM_014822.2         GGAGGCTTCCCTGGAGGTCCTGCACAGATGGCTGGTCCGCCACAGCCCCAGAAGAAGCTG
XM_005263379.1      GGAGGCTTCCCTGGAGGTCCTGCACAGATGGCTGGTCCGCCACAGCCCCAGAAGAAGCTG
XM_005263378.1      GGAGGCTTCCCTGGAGGTCCTGCACAGATGGCTGGTCCGCCACAGCCCCAGAAGAAGCTG
                    ************************************************************

HsCD00040142        GATCCTGACTCTATCCCTAGCCCAATCCAGGTGATTGAGAATGATAGAGCCAGCAGAGGA
NM_014822.2         GATCCTGACTCTATCCCTAGCCCAATCCAGGTGATTGAGAATGATAGAGCCAGCAGAGGA
XM_005263379.1      GATCCTGACTCTATCCCTAGCCCAATCCAGGTGATTGAGAATGATAGAGCCAGCAGAGGA
XM_005263378.1      GATCCTGACTCTATCCCTAGCCCAATCCAGGTGATTGAGAATGATAGAGCCAGCAGAGGA
                    ************************************************************

HsCD00040142        GGACAAGTTTATGCCACCAACACCAGAGGCCAGATCCCTCCCCTGGTCACTACAGATTGC
NM_014822.2         GGACAAGTTTATGCCACCAACACCAGAGGCCAGATCCCTCCCCTGGTCACTACAGATTGC
XM_005263379.1      GGACAAGTTTATGCCACCAACACCAGAGGCCAGATCCCTCCCCTGGTCACTACAGATTGC
XM_005263378.1      GGACAAGTTTATGCCACCAACACCAGAGGCCAGATCCCTCCCCTGGTCACTACAGATTGC
                    ************************************************************

HsCD00040142        ATGATACAAGACCAAGGAAATGCCAGTCCTCGATTCATCCGTTGTACAACATACTGTTTT
NM_014822.2         ATGATACAAGACCAAGGAAATGCCAGTCCTCGATTCATCCGTTGTACAACATACTGTTTT
XM_005263379.1      ATGATACAAGACCAAGGAAATGCCAGTCCTCGATTCATCCGTTGTACAACATACTGTTTT
XM_005263378.1      ATGATACAAGACCAAGGAAATGCCAGTCCTCGATTCATCCGTTGTACAACATACTGTTTT
                    ************************************************************

HsCD00040142        CCATGCACGTCAGATATGGCTAAGCAAGCTCAGATTCCATTAGCTGCTGTCATCAAGCCC
NM_014822.2         CCATGCACGTCAGATATGGCTAAGCAAGCTCAGATTCCATTAGCTGCTGTCATCAAGCCC
XM_005263379.1      CCATGCACGTCAGATATGGCTAAGCAAGCTCAGATTCCATTAGCTGCTGTCATCAAGCCC
XM_005263378.1      CCATGCACGTCAGATATGGCTAAGCAAGCTCAGATTCCATTAGCTGCTGTCATCAAGCCC
                    ************************************************************

HsCD00040142        TTTGCCACCATTCCTTCAAATGAGAGTCCCCTTTACTTGGTAAATCACGGCGAGAGTGGA
NM_014822.2         TTTGCCACCATTCCTTCAAATGAGAGTCCCCTTTACTTGGTAAATCACGGCGAGAGTGGA
XM_005263379.1      TTTGCCACCATTCCTTCAAATGAGAGTCCCCTTTACTTGGTAAATCACGGCGAGAGTGGA
XM_005263378.1      TTTGCCACCATTCCTTCAAATGAGAGTCCCCTTTACTTGGTAAATCACGGCGAGAGTGGA
                    ************************************************************

HsCD00040142        CCAGTCAGATGCAACAGGTGCAAGGCCTACATGTGCCCATTTATGCAGTTCATCGAAGGA
NM_014822.2         CCAGTCAGATGCAACAGGTGCAAGGCCTACATGTGCCCATTTATGCAGTTCATCGAAGGA
XM_005263379.1      CCAGTCAGATGCAACAGGTGCAAGGCCTACATGTGCCCATTTATGCAGTTCATCGAAGGA
XM_005263378.1      CCAGTCAGATGCAACAGGTGCAAGGCCTACATGTGCCCATTTATGCAGTTCATCGAAGGA
                    ************************************************************

HsCD00040142        GGAAGGAGATATCAGTGTGGATTTTGCAACTGTGTGAATGATGTTCCACCATTCTATTTC
NM_014822.2         GGAAGGAGATATCAGTGTGGATTTTGCAACTGTGTGAATGATGTTCCACCATTCTATTTC
XM_005263379.1      GGAAGGAGATATCAGTGTGGATTTTGCAACTGTGTGAATGATGTTCCACCATTCTATTTC
XM_005263378.1      GGAAGGAGATATCAGTGTGGATTTTGCAACTGTGTGAATGATGTTCCACCATTCTATTTC
                    ************************************************************

HsCD00040142        CAACATCTGGACCACATTGGAAGAAGACTGGACCACTATGAGAAACCAGAGTTATCTCTA
NM_014822.2         CAACATCTGGACCACATTGGAAGAAGACTGGACCACTATGAGAAACCAGAGTTATCTCTA
XM_005263379.1      CAACATCTGGACCACATTGGAAGAAGACTGGACCACTATGAGAAACCAGAGTTATCTCTA
XM_005263378.1      CAACATCTGGACCACATTGGAAGAAGACTGGACCACTATGAGAAACCAGAGTTATCTCTA
                    ************************************************************

HsCD00040142        GGATCTTATGAATATGTTGCCACTTTGGATTATTGCAGAAAGAGTAAGCCTCCCAACCCA
NM_014822.2         GGATCTTATGAATATGTTGCCACTTTGGATTATTGCAGAAAGAGTAAGCCTCCCAACCCA
XM_005263379.1      GGATCTTATGAATATGTTGCCACTTTGGATTATTGCAGAAAGAGTAAGCCTCCCAACCCA
XM_005263378.1      GGATCTTATGAATATGTTGCCACTTTGGATTATTGCAGAAAGAGTAAGCCTCCCAACCCA
                    ************************************************************

HsCD00040142        CCAGCCTTTATCTTCATGATTGATGTTTCATATAGTAACATAAAGAATGGACTTGTCAAG
NM_014822.2         CCAGCCTTTATCTTCATGATTGATGTTTCATATAGTAACATAAAGAATGGACTTGTCAAG
XM_005263379.1      CCAGCCTTTATCTTCATGATTGATGTTTCATATAGTAACATAAAGAATGGACTTGTCAAG
XM_005263378.1      CCAGCCTTTATCTTCATGATTGATGTTTCATATAGTAACATAAAGAATGGACTTGTCAAG
                    ************************************************************

HsCD00040142        CTCATATGTGAAGAACTGAAGACCATGCTGGAAAAAATTCCAAAGGAAGAGCAAGAAGAG
NM_014822.2         CTCATATGTGAAGAACTGAAGACCATGCTGGAAAAAATTCCAAAGGAAGAGCAAGAAGAG
XM_005263379.1      CTCATATGTGAAGAACTGAAGACCATGCTGGAAAAAATTCCAAAGGAAGAGCAAGAAGAG
XM_005263378.1      CTCATATGTGAAGAACTGAAGACCATGCTGGAAAAAATTCCAAAGGAAGAGCAAGAAGAG
                    ************************************************************

HsCD00040142        ACGTCTGCAATTCGAGTGGGTTTTATCACATATAACAAAGTTCTCCATTTCTTTAATGTG
NM_014822.2         ACGTCTGCAATTCGAGTGGGTTTTATCACATATAACAAAGTTCTCCATTTCTTTAATGTG
XM_005263379.1      ACGTCTGCAATTCGAGTGGGTTTTATCACATATAACAAAGTTCTCCATTTCTTTAATGTG
XM_005263378.1      ACGTCTGCAATTCGAGTGGGTTTTATCACATATAACAAAGTTCTCCATTTCTTTAATGTG
                    ************************************************************

HsCD00040142        AAGAGTAATCTGGCCCAGCCTCAGATGATGGTGGTGACTGATGTTGGAGAAGTCTTTGTT
NM_014822.2         AAGAGTAATCTGGCCCAGCCTCAGATGATGGTGGTGACTGATGTTGGAGAAGTCTTTGTT
XM_005263379.1      AAGAGTAATCTGGCCCAGCCTCAGATGATGGTGGTGACTGATGTTGGAGAAGTCTTTGTT
XM_005263378.1      AAGAGTAATCTGGCCCAGCCTCAGATGATGGTGGTGACTGATGTTGGAGAAGTCTTTGTT
                    ************************************************************

HsCD00040142        CCTTTGTTGGATGGTTTCCTTGTCAACTATCAAGAATCCCAATCTGTGATTCATAATTTG
NM_014822.2         CCTTTGTTGGATGGTTTCCTTGTCAACTATCAAGAATCCCAATCTGTGATTCATAATTTG
XM_005263379.1      CCTTTGTTGGATGGTTTCCTTGTCAACTATCAAGAATCCCAATCTGTGATTCATAATTTG
XM_005263378.1      CCTTTGTTGGATGGTTTCCTTGTCAACTATCAAGAATCCCAATCTGTGATTCATAATTTG
                    ************************************************************

HsCD00040142        TTGGACCAGATTCCAGACATGTTTGCAGACTCTAATGAAAATGAGACTGTCTTTGCTCCT
NM_014822.2         TTGGACCAGATTCCAGACATGTTTGCAGACTCTAATGAAAATGAGACTGTCTTTGCTCCT
XM_005263379.1      TTGGACCAGATTCCAGACATGTTTGCAGACTCTAATGAAAATGAGACTGTCTTTGCTCCT
XM_005263378.1      TTGGACCAGATTCCAGACATGTTTGCAGACTCTAATGAAAATGAGACTGTCTTTGCTCCT
                    ************************************************************

HsCD00040142        GTCATCCAGGCTGGCATGGAAGCACTAAAGGCAGCAGACTGTCCTGGGAAGCTGTTCATC
NM_014822.2         GTCATCCAGGCTGGCATGGAAGCACTAAAGGCAGCAGACTGTCCTGGGAAGCTGTTCATC
XM_005263379.1      GTCATCCAGGCTGGCATGGAAGCACTAAAGGCAGCAGACTGTCCTGGGAAGCTGTTCATC
XM_005263378.1      GTCATCCAGGCTGGCATGGAAGCACTAAAGGCAGCAGACTGTCCTGGGAAGCTGTTCATC
                    ************************************************************

HsCD00040142        TTCCATTCTTCCTTGCCAACTGCTGAAGCACCAGGGAAGCTCAAAAACAGAGATGACAAA
NM_014822.2         TTCCATTCTTCCTTGCCAACTGCTGAAGCACCAGGGAAGCTCAAAAACAGAGATGACAAA
XM_005263379.1      TTCCATTCTTCCTTGCCAACTGCTGAAGCACCAGGGAAGCTCAAAAACAGAGATGACAAA
XM_005263378.1      TTCCATTCTTCCTTGCCAACTGCTGAAGCACCAGGGAAGCTCAAAAACAGAGATGACAAA
                    ************************************************************

HsCD00040142        AAACTGGTTAATACAGACAAAGAGAAGATACTTTTCCAGCCCCAAACAAATGTCTATGAC
NM_014822.2         AAACTGGTTAATACAGACAAAGAGAAGATACTTTTCCAGCCCCAAACAAATGTCTATGAC
XM_005263379.1      AAACTGGTTAATACAGACAAAGAGAAGATACTTTTCCAGCCCCAAACAAATGTCTATGAC
XM_005263378.1      AAACTGGTTAATACAGACAAAGAGAAGATACTTTTCCAGCCCCAAACAAATGTCTATGAC
                    ************************************************************

HsCD00040142        TCATTGGCCAAGGACTGCGTGGCTCACGGCTGCTCTGTGACACTCTTCCTCTTTCCTAGT
NM_014822.2         TCATTGGCCAAGGACTGCGTGGCTCACGGCTGCTCTGTGACACTCTTCCTCTTTCCTAGT
XM_005263379.1      TCATTGGCCAAGGACTGCGTGGCTCACGGCTGCTCTGTGACACTCTTCCTCTTTCCTAGT
XM_005263378.1      TCATTGGCCAAGGACTGCGTGGCTCACGGCTGCTCTGTGACACTCTTCCTCTTTCCTAGT
                    ************************************************************

HsCD00040142        CAGTATGTGGACGTGGCCTCGCTGGGGCTGGTTCCTCAGCTCACTGGAGGAACCCTTTAC
NM_014822.2         CAGTATGTGGACGTGGCCTCGCTGGGGCTGGTTCCTCAGCTCACTGGAGGAACCCTTTAC
XM_005263379.1      CAGTATGTGGACGTGGCCTCGCTGGGGCTGGTTCCTCAGCTCACTGGAGGAACCCTTTAC
XM_005263378.1      CAGTATGTGGACGTGGCCTCGCTGGGGCTGGTTCCTCAGCTCACTGGAGGAACCCTTTAC
                    ************************************************************

HsCD00040142        AAATACAACAATTTCCAGATGCACTTGGATAGACAACAATTTTTGAACGACCTCAGAAAT
NM_014822.2         AAATACAACAATTTCCAGATGCACTTGGATAGACAACAATTTTTGAACGACCTCAGAAAT
XM_005263379.1      AAATACAACAATTTCCAGATGCACTTGGATAGACAACAATTTTTGAACGACCTCAGAAAT
XM_005263378.1      AAATACAACAATTTCCAGATGCACTTGGATAGACAACAATTTTTGAACGACCTCAGAAAT
                    ************************************************************

HsCD00040142        GATATTGAAAAGAAAATAGGCTTTGATGCTATTATGAGGGTTCGTACCAGCACAGGTTTC
NM_014822.2         GATATTGAAAAGAAAATAGGCTTTGATGCTATTATGAGGGTTCGTACCAGCACAGGTTTC
XM_005263379.1      GATATTGAAAAGAAAATAGGCTTTGATGCTATTATGAGGGTTCGTACCAGCACAGGTTTC
XM_005263378.1      GATATTGAAAAGAAAATAGGCTTTGATGCTATTATGAGGGTTCGTACCAGCACAGGTTTC
                    ************************************************************

HsCD00040142        AGAGCCACTGATTTCTTTGGTGGAATCTTGATGAACAACACCACCGATGTAGAAATGGCT
NM_014822.2         AGAGCCACTGATTTCTTTGGTGGAATCTTGATGAACAACACCACCGATGTAGAAATGGCT
XM_005263379.1      AGAGCCACTGATTTCTTTGGTGGAATCTTGATGAACAACACCACCGATGTAGAAATGGCT
XM_005263378.1      AGAGCCACTGATTTCTTTGGTGGAATCTTGATGAACAACACCACCGATGTAGAAATGGCT
                    ************************************************************

HsCD00040142        GCCATCGATTGTGACAAGGCAGTGACCGTGGAGTTCAAGCACGATGACAAACTCAGTGAA
NM_014822.2         GCCATCGATTGTGACAAGGCAGTGACCGTGGAGTTCAAGCACGATGACAAACTCAGTGAA
XM_005263379.1      GCCATCGATTGTGACAAGGCAGTGACCGTGGAGTTCAAGCACGATGACAAACTCAGTGAA
XM_005263378.1      GCCATCGATTGTGACAAGGCAGTGACCGTGGAGTTCAAGCACGATGACAAACTCAGTGAA
                    ************************************************************

HsCD00040142        GACAGTGGAGCCTTAATCCAGTGTGCTGTGCTTTACACGACAATCAGTGGTCAAAGAAGA
NM_014822.2         GACAGTGGAGCCTTAATCCAGTGTGCTGTGCTTTACACGACAATCAGTGGTCAAAGAAGA
XM_005263379.1      GACAGTGGAGCCTTAATCCAGTGTGCTGTGCTTTACACGACAATCAGTGGTCAAAGAAGA
XM_005263378.1      GACAGTGGAGCCTTAATCCAGTGTGCTGTGCTTTACACGACAATCAGTGGTCAAAGAAGA
                    ************************************************************

HsCD00040142        CTTCGGATTCACAATCTTGGCTTAAACTGCAGCTCTCAGCTAGCTGATCTTTATAAGAGC
NM_014822.2         CTTCGGATTCACAATCTTGGCTTAAACTGCAGCTCTCAGCTAGCTGATCTTTATAAGAGC
XM_005263379.1      CTTCGGATTCACAATCTTGGCTTAAACTGCAGCTCTCAGCTAGCTGATCTTTATAAGAGC
XM_005263378.1      CTTCGGATTCACAATCTTGGCTTAAACTGCAGCTCTCAGCTAGCTGATCTTTATAAGAGC
                    ************************************************************

HsCD00040142        TGTGAGACAGATGCTCTTATCAACTTCTTTGCCAAGTCAGCTTTTAAAGCAGTTCTTCAC
NM_014822.2         TGTGAGACAGATGCTCTTATCAACTTCTTTGCCAAGTCAGCTTTTAAAGCAGTTCTCCAC
XM_005263379.1      TGTGAGACAGATGCTCTTATCAACTTCTTTGCCAAGTCAGCTTTTAAAGCAGTTCTCCAC
XM_005263378.1      TGTGAGACAGATGCTCTTATCAACTTCTTTGCCAAGTCAGCTTTTAAAGCAGTTCTCCAC
                    ******************************************************** ***

HsCD00040142        CAGCCTTTGAAGGTCATCCGGGAAATTCTAGTTAATCAGACTGCCCATATGTTGGCATGT
NM_014822.2         CAGCCTTTGAAGGTCATCCGGGAAATTCTAGTTAATCAGACTGCCCATATGTTGGCATGT
XM_005263379.1      CAGCCTTTGAAGGTCATCCGGGAAATTCTAGTTAATCAGACTGCCCATATGTTGGCATGT
XM_005263378.1      CAGCCTTTGAAGGTCATCCGGGAAATTCTAGTTAATCAGACTGCCCATATGTTGGCATGT
                    ************************************************************

HsCD00040142        TACCGGAAGAATTGTGCAAGTCCTTCTGCAGCAAGCCAGCTTATTCTACCAGATTCCATG
NM_014822.2         TACCGGAAGAATTGTGCAAGTCCTTCTGCAGCAAGCCAGCTTATTCTACCAGATTCCATG
XM_005263379.1      TACCGGAAGAATTGTGCAAGTCCTTCTGCAGCAAGCCAGCTTATTCTACCAGATTCCATG
XM_005263378.1      TACCGGAAGAATTGTGCAAGTCCTTCTGCAGCAAGCCAGCTTATTCTACCAGATTCCATG
                    ************************************************************

HsCD00040142        AAAGTATTGCCAGTGTACATGAATTGCTTGTTGAAAAACTGTGTACTACTCAGCAGACCA
NM_014822.2         AAAGTATTGCCAGTGTACATGAATTGCTTGTTGAAAAACTGTGTACTACTCAGCAGACCA
XM_005263379.1      AAAGTATTGCCAGTGTACATGAATTGCTTGTTGAAAAACTGTGTACTACTCAGCAGACCA
XM_005263378.1      AAAGTATTGCCAGTGTACATGAATTGCTTGTTGAAAAACTGTGTACTACTCAGCAGACCA
                    ************************************************************

HsCD00040142        GAGATCTCAACTGATGAACGAGCATACCAGAGACAGCTGGTCATGACCATGGGTGTGGCT
NM_014822.2         GAGATCTCAACTGATGAACGAGCATACCAGAGACAGCTGGTCATGACCATGGGTGTGGCT
XM_005263379.1      GAGATCTCAACTGATGAACGAGCATACCAGAGACAGCTGGTCATGACCATGGGTGTGGCT
XM_005263378.1      GAGATCTCAACTGATGAACGAGCATACCAGAGACAGCTGGTCATGACCATGGGTGTGGCT
                    ************************************************************

HsCD00040142        GACTCTCAGCTTTTCTTCTACCCACAACTTCTGCCCATACACACGTTAGATGTCAAGAGT
NM_014822.2         GACTCTCAGCTTTTCTTCTACCCACAACTTCTGCCCATACACACGTTAGATGTCAAGAGT
XM_005263379.1      GACTCTCAGCTTTTCTTCTACCCACAACTTCTGCCCATACACACGTTAGATGTCAAGAGT
XM_005263378.1      GACTCTCAGCTTTTCTTCTACCCACAACTTCTGCCCATACACACGTTAGATGTCAAGAGT
                    ************************************************************

HsCD00040142        ACAATGTTACCTGCTGCCGTTCGTTGCTCTGAGTCCCGTCTTTCAGAAGAAGGAATATTC
NM_014822.2         ACAATGTTACCTGCTGCCGTTCGTTGCTCTGAGTCCCGTCTTTCAGAAGAAGGAATATTC
XM_005263379.1      ACAATGTTACCTGCTGCCGTTCGTTGCTCTGAGTCCCGTCTTTCAGAAGAAGGAATATTC
XM_005263378.1      ACAATGTTACCTGCTGCCGTTCGTTGCTCTGAGTCCCGTCTTTCAGAAGAAGGAATATTC
                    ************************************************************

HsCD00040142        TTACTGGCTAATGGTCTACACATGTTCCTGTGGTTGGGAGTAAGCAGCCCACCAGAACTG
NM_014822.2         TTACTGGCTAATGGTCTACACATGTTCCTGTGGTTGGGAGTAAGCAGCCCACCAGAACTG
XM_005263379.1      TTACTGGCTAATGGTCTACACATGTTCCTGTGGTTGGGAGTAAGCAGCCCACCAGAACTG
XM_005263378.1      TTACTGGCTAATGGTCTACACATGTTCCTGTGGTTGGGAGTAAGCAGCCCACCAGAACTG
                    ************************************************************

HsCD00040142        ATCCAAGGAATATTTAATGTGCCATCTTTTGCACATATCAACACAGATATGACATTGCTG
NM_014822.2         ATCCAAGGAATATTTAATGTGCCATCTTTTGCACATATCAACACAGATATGACATTGCTG
XM_005263379.1      ATCCAAGGAATATTTAATGTGCCATCTTTTGCACATATCAACACAGATATGACATTGCTG
XM_005263378.1      ATCCAAGGAATATTTAATGTGCCATCTTTTGCACATATCAACACAGATATGACATTGCTG
                    ************************************************************

HsCD00040142        CCTGAAGTGGGAAACCCATACTCTCAACAACTCAGAATGATAATGGGTATTATCCAACAA
NM_014822.2         CCTGAAGTGGGAAACCCATACTCTCAACAACTCAGAATGATAATGGGTATTATCCAACAA
XM_005263379.1      CCTGAAGTGGGAAACCCATACTCTCAACAACTCAGAATGATAATGGGTATTATCCAACAA
XM_005263378.1      CCTGAAGTGGGAAACCCATACTCTCAACAACTCAGAATGATAATGGGTATTATCCAACAA
                    ************************************************************

HsCD00040142        AAGAGGCCATATTCAATGAAGCTCACAATTGTAAAGCAGCGAGAACAACCAGAAATGGTT
NM_014822.2         AAGAGGCCATATTCAATGAAGCTCACAATTGTAAAGCAGCGAGAACAACCAGAAATGGTT
XM_005263379.1      AAGAGGCCATATTCAATGAAGCTCACAATTGTAAAGCAGCGAGAACAACCAGAAATGGTT
XM_005263378.1      AAGAGGCCATATTCAATGAAGCTCACAATTGTAAAGCAGCGAGAACAACCAGAAATGGTT
                    ************************************************************

HsCD00040142        TTCCGACAGTTCCTGGTAGAAGACAAAGGACTTTACGGAGGCTCTTCTTATGTGGATTTC
NM_014822.2         TTCCGACAGTTCCTGGTAGAAGACAAAGGACTTTACGGAGGCTCTTCTTATGTGGATTTC
XM_005263379.1      TTCCGACAGTTCCTGGTAGAAGACAAAGGACTTTACGGAGGCTCTTCTTATGTGGATTTC
XM_005263378.1      TTCCGACAGTTCCTGGTAGAAGACAAAGGACTTTACGGAGGCTCTTCTTATGTGGATTTC
                    ************************************************************

HsCD00040142        CTTTGTTGTGTTCACAAGGAGATCTGTCAGCTGCTTAATTTG
NM_014822.2         CTTTGTTGTGTTCACAAGGAGATCTGTCAGCTGCTTAATTAA
XM_005263379.1      CTTTGTTGTGTTCACAAGGAGATCTGTCAGCTGCTTAATTAA
XM_005263378.1      CTTTGTTGTGTTCACAAGGAGATCTGTCAGCTGCTTAATTAA
                    ****************************************:.

Pathways

Reactome : Adaptive Immune System
Reactome : Antigen Presentation: Folding, assembly and peptide loading of class I MHC
Reactome : Asparagine N-linked glycosylation
Reactome : COPII (Coat Protein 2) Mediated Vesicle Transport
Reactome : Class I MHC mediated antigen processing & presentation
Reactome : ER to Golgi Transport
Reactome : Immune System
Reactome : MHC class II antigen presentation
Reactome : Membrane Trafficking
Reactome : Metabolism
Reactome : Metabolism of lipids and lipoproteins
Reactome : Metabolism of proteins
Reactome : Post-translational protein modification
Reactome : Regulation of cholesterol biosynthesis by SREBP (SREBF)
Reactome : Transport to the Golgi and subsequent modification
WikiPathway : SREBP signalling

Protein

UniProt : A8K6V0
UniProt : O94855
HPRD : 06218

Clone

Cloning Information : 170587
HIP Master Clone ID : 144053
Original Clone ID : FLH170587.01L

Organism


TAX_ID : 9606
Species Specific ID: 9871

Genome

Chromosome : 4
Map Location : 4q26
Ensembl : ENSG00000150961

Reagents

Labome : SEC24D-antibody