Gene:
Gene Symbol:
Gene Name:
Original Clone ID:
None
Keyword:
Full length: Yes; NT position: 1--3177; aa position: 1-1059; copied from sequenceID: 507137
Species:
Human alphaherpesvirus 1
Type:
cDNA
Vector Name:
pDONR221
Format:
FUSION
Source:
CPD
Description:
None
Comments:
None
Mutation / Discrepancy:
No / No
Publications:
None
Authors:
Center for Personalized Diagnostics
HaCD00816331
Price:
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AVAILABLE
No restriction
Special MTA: None
Special MTA: None
Insert sequence: 3174nts
Open reading frame: 1 to 3174
ATGGGGCAGGAAGACGGGAACCGCGGGGAGAGGCGGGCGGCCGGGACTCCCGTGGAGGTG
ACCGCGCTTTATGCGACCGACGGGTGCGTTATTACCTCTTCGATCGCCCTCCTCACAAAC
TCTCTACTGGGGGCCGAGCCGGTTTATATATTCAGCTACGACGCATACACGCACGATGGC
CGTGCCGACGGGCCCACGGAGCAAGACAGGTTCGAAGAGAGTCGGGCGCTCTACCAAGCG
TCGGGCGGGCTAAATGGCGACTCCTTCCGAGTAACCTTTTGTTTATTGGGGACGGAAGTG
GGTGGGACCCACCAGGCCCGCGGGCGAACCCGACCCATGTTCGTCTGTCGCTTCGAGCGA
GCGGACGACGTCGCCGCGCTACAGGACGCCCTGGCGCACGGGACCCCGCTACAACCGGAC
CACATCGCCGCCACCCTGGACGCGGAGGCCACGTTCGCGCTGCATGCGAACATGATCCTG
GCTCTCACCGTGGCCATCAACAACGCCAGCCCCCGCACCGGACGCGACGCCGCCGCGGCG
CAGTATGATCAGGGCGCGTCCCTACGCTCGCTCGTGGGGCGCACGTCCCTGGGACAACGC
GGCCTTACCACGCTATACGTCCACCACGAGGTGCGCGTGCTTGCCGCGTACCGCAGGGCG
TATTATGGAAGCGCGCAGAGTCCCTTCTGGTTTCTTAGCAAATTCGGGCCGGACGAAAAA
AGCCTGGTGCTCACCACTCGGTACTACCTGCTTCAGGCCCAGCGTCTGGGGGGCGCGGGG
GCCACGTACGACCTGCAGGCCATCAAGGACATCTGCGCCACCTACGCGATTCCCCACGCC
CCCCGCCCCGACACCGTCAGCGCTGCGTCCCTGACCTCGTTTGCCGCCATCACGCGGTTC
TGTTGCACGAGCCAGTACGCCCGCGGGGCCGCGGCGGCCGGGTTTCCGCTTTACGTGGAG
CGCCGTATTGCGGCCGACGTCCGCGAGACCAGTGCGCTGGAGAAGTTCATAACCCACGAT
CGCAGTTGCCTGCGCGTGTCCGACCGTGAATTCATTACGTACATCTACCTGGCCCATTTT
GAGTGTTTCAGCCCCCCGCGCCTAGCCACGCATCTTCGGGCCGTGACGACCCACGACCCC
AACCCCGCGGCCAGCACGGAGCAGCCCTCGCCCCTGGGCAGGGAGGCCGTGGAACAATTT
TTTTGTCACGTGCGCGCCCAACTGAATATCGGGGAGTACGTCAAACACAACGTGACCCCC
CGGGAGACCGTCCTGGATGGCGATACGGCCAAGGCCTACCTGCGCGCTCGCACGTACGCG
CCCGGGGCCCTGACGCCCGCCCCCGCGTATTGCGGGGCCGTGGACTCCGCCACCAAAATG
ATGGGGCGTTTGGCGGACGCCGAAAAGCTCCTGGTCCCCCGCGGGTGGCCCGCGTTTGCG
CCCGCCAGTCCCGGGGAGGACACGGCGGGCGGCACGCCGCCCCCACAGACCTGCGGAATT
GTCAAGCGCCTCCTGAGACTGGCCGCCACGGAACAGCAGGGCCCCACACCCCCGGCGATC
GCGGCGCTTATCCGTAATGCGGCGGTGCAGACTCCCCTGCCCGTCTACCGGATATCCATG
GTCCCCACGGGACAGGCATTTGCCGCGCTGGCCTGGGACGACTGGGCCCGCATAACGCGG
GACGCTCGCCTGGCCGAAGCGGTCGTGTCCGCCGAAGCGGCGGCGCACCCCGACCACGGC
GCGCTGGGCAGGCGGCTCACGGATCGCATCCGCGCCCAGGGCCCCGTGATGCCCCCTGGC
GGCCTGGATGCCGGGGGGCAGATGTACGTGAATCGCAACGAGATATTCAACGGCGCGCTG
GCAATCACAAACATCATCCTGGATCTCGACATCGCCCTGAAGGAGCCCGTCCCCTTTCGC
CGGCTCCACGAGGCCCTGGGCCACTTTAGGCGCGGGGCTCTGGCTGCGGTTCAGCTCCTG
TTTCCCGCGGCCCGCGTGGACCCCGACGCATATCCCTGTTATTTTTTCAAAAGCGCATGT
CGGCCCGGCCCGGCGTCCGTGGGTTCCGGCAGCGGACTCGGCAACGACGACGACGGGGAC
TGGTTTCCCTGCTACGACGACGCCGGTGATGAGGAGTGGGCGGAGGACCCGGGCGCCATG
GACACATCCCACGATCCCCCGGACGACGAGGTTGCCTACTTTGACCTGTGCCACGAAGTC
GGCCCCACGGCGGAACCTCGCGAAACGGATTCGCCCGTGTGTTCCTGCACCGACAAGATC
GGACTGCGGGTGTGCATGCCCGTCCCCGCCCCGTACGTCGTCCACGGTTCTCTAACGATG
CGGGGGGTGGCACGGGTCATCCAGCAGGCGGTGCTGTTGGACCGAGATTTTGTGGAGGCC
ATCGGGAGCTACGTAAAAAACTTCCTGTTGATCGATACGGGGGTGTACGCCCACGGCCAC
AGCCTGCGCTTGCCGTATTTTGCCAAAATCGCCCCCGACGGGCCTGCGTGCGGAAGGCTG
CTGCCAGTGTTTGTGATCCCCCCCGCCTGCAAAGACGTTCCGGCGTTTGTCGCCGCGCAC
GCCGACCCGCGGCGCTTCCATTTTCACGCCCCGCCCACCTATCTCGCTTCCCCCCGGGAG
ATCCGTGTCCTGCACAGCCTGGGTGGGGACTATGTGAGCTTCTTTGAAAGGAAGGCGTCC
CGCAACGCGCTGGAACACTTTGGGCGACGCGAGACCCTGACGGAGGTCCTGGGTCGGTAC
AACGTACAGCCGGATGCGGGGGGGACCGTCGAGGGGTTCGCATCGGAACTGCTGGGGCGG
ATAGTCGCGTGCATCGAAACCCACTTTCCCGAACACGCCGGCGAATATCAGGCCGTATCC
GTCCGGCGGGCCGTCAGTAAGGACGACTGGGTCCTCCTACAGCTAGTCCCCGTTCGCGGT
ACCCTGCAGCAAAGCCTGTCGTGTCTGCGCTTTAAGCACGGCCGGGCGAGTCGCGCCACG
GCGCGGACATTCGTCGCGCTGAGCGTCGGGGCCAACAACCGCCTGTGCGTGTCCTTGTGT
CAGCAGTGCTTTGCCGCCAAATGCGACAGCAACCGCCTGCACACGCTGTTTACCATTGAC
GCCGGCACGCCATGCTCGCCGTCCGTTCCCTGCAGCACCTCTCAACCGTCGTCT
Protein sequence predicted based on nucleotide sequence
MGQEDGNRGERRAAGTPVEVTALYATDGCVITSSIALLTNSLLGAEPVYIFSYDAYTHDG RADGPTEQDRFEESRALYQASGGLNGDSFRVTFCLLGTEVGGTHQARGRTRPMFVCRFER ADDVAALQDALAHGTPLQPDHIAATLDAEATFALHANMILALTVAINNASPRTGRDAAAA QYDQGASLRSLVGRTSLGQRGLTTLYVHHEVRVLAAYRRAYYGSAQSPFWFLSKFGPDEK SLVLTTRYYLLQAQRLGGAGATYDLQAIKDICATYAIPHAPRPDTVSAASLTSFAAITRF CCTSQYARGAAAAGFPLYVERRIAADVRETSALEKFITHDRSCLRVSDREFITYIYLAHF ECFSPPRLATHLRAVTTHDPNPAASTEQPSPLGREAVEQFFCHVRAQLNIGEYVKHNVTP RETVLDGDTAKAYLRARTYAPGALTPAPAYCGAVDSATKMMGRLADAEKLLVPRGWPAFA PASPGEDTAGGTPPPQTCGIVKRLLRLAATEQQGPTPPAIAALIRNAAVQTPLPVYRISM VPTGQAFAALAWDDWARITRDARLAEAVVSAEAAAHPDHGALGRRLTDRIRAQGPVMPPG GLDAGGQMYVNRNEIFNGALAITNIILDLDIALKEPVPFRRLHEALGHFRRGALAAVQLL FPAARVDPDAYPCYFFKSACRPGPASVGSGSGLGNDDDGDWFPCYDDAGDEEWAEDPGAM DTSHDPPDDEVAYFDLCHEVGPTAEPRETDSPVCSCTDKIGLRVCMPVPAPYVVHGSLTM RGVARVIQQAVLLDRDFVEAIGSYVKNFLLIDTGVYAHGHSLRLPYFAKIAPDGPACGRL LPVFVIPPACKDVPAFVAAHADPRRFHFHAPPTYLASPREIRVLHSLGGDYVSFFERKAS RNALEHFGRRETLTEVLGRYNVQPDAGGTVEGFASELLGRIVACIETHFPEHAGEYQAVS VRRAVSKDDWVLLQLVPVRGTLQQSLSCLRFKHGRASRATARTFVALSVGANNRLCVSLC QQCFAAKCDSNRLHTLFTIDAGTPCSPSVPCSTSQPSS
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
kanamycin
Bacterial Selection Condition:
50ug/mL kanamycin
Growth Condition:
Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:
Conditions for Gateway-type vectors in recombined (with insert) form and other kanamycin resistant vectors.
Protein Expression Results:
None
Recommended expression in:
Not Applicable
Vector Name:
pDONR221
Synonyms:
''
Description:
Gateway®, donor (entry), recombinational cloning clone, bacterial expression expression with rrnB T2 and rrnB T1 and M13 forward and attP1 and ccdB and CmR and cat_promoter-var002 and attP2 and T7 promoter and M13 reverse and KanR and ori; 50ug/mL of Kanamycin resistance in Pichia;
Comments:
The position of features were determined for the unrecombined (empty) form of the vector, which is described in detail on the Invitrogen website.
Size (bp):
4762
Parent Vector:
None
Properties:
Gateway, bacterial expression, donor (entry), recombinational cloning
Author Name:
Invitrogen
Publications:
None
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
CDS
ccdB
CcdB, a bacterial toxin that poisons DNA gyrase
1197
1502
CDS
CmR
confers resistance to chloramphenicol
1847
2506
CDS
KanR
confers resistance to kanamycin in bacteria or G418 (Geneticin) in eukaryotes
3156
3965
Terminator
rrnB T2
transcription terminator T2 from the E. coli rrnB gene
268
295
Terminator
rrnB T1
transcription terminator T1 from the E. coli rrnB gene
387
473
primer_bind
M13 forward
common sequencing primer, one of multiple similar variants
537
553
primer_bind
M13 reverse
common sequencing primer, one of multiple similar variants
3027
3043
promoter
cat_promoter-var002
promoter of the E. coli cat gene encoding chloramphenicol acetyltransferase
2507
2609
promoter
T7 promoter
promoter for bacteriophage T7 RNA polymerase
3004
3022
protein binding site
attP1
recombination site for the Gateway BP reaction
570
801
protein binding site
attP2
recombination site for the Gateway BP reaction
2754
2985
rep_origin
ori
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
4112
4700
