Gene:
Gene Symbol:
TM0308
Gene Name:
alpha-xylosidase YicI
Original Clone ID:
13545
Keyword:
full-length cds
Species:
Thermotoga maritima
Type:
cDNA
Vector Name:
pMH4
Format:
CLOSED
Source:
Joint Center for Structural Genomics
Description:
None
Comments:
None
Mutation / Discrepancy:
No / No
Publications:
None
Authors:
PSI
Joint Center for Structural Genomics
Joint Center for Structural Genomics
TmCD00530692
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AVAILABLE
No restriction
Special MTA: PSI
Special MTA: PSI
Insert sequence: 2295nts
Open reading frame: 51 to 2345
AGATATACATACCCATGGGATCTGATAAAATTCATCATCATCATCATCACATGCGTTTCA
CGGAAGGGCTTTGGAGATTGAGAGAGGGGGTACAGTTGTTCAGGCCAGAACAGGTGTACG
AATACTCCTGCGATGGAAAGAAACTGATCCTTCGATCGCCGTTTCGGAGGGTGGAGCACC
GGGGACAGACGCTTCAGGGTCCGGTCTTCGAGATCGAGATCTCCTCTCCGTTTGAAAACG
TAATAAGAATTCGGTTCAGACATTTCAAGGGAGTACTCGAAAAGCCCCCGTACTACGAAA
TCTACCAGGACGAAAGCTTCACACCGGATATCAAAGAAACAGAAGGAAGTTTTATCTTCA
CCTCAGGAAAGGCAAAAGCGATCATAAGGAAGAATCCCTTCGGTGTGGAATTCTTTTACG
AAGATCGTTTCCTCACGAAATCGGATCTGGGATACGCCGTGGCACCAGAAGGGAGGTTCT
GTCTTGAAAGACTCCATCTGAGCGTGGGAGAGATGATCTACGGTCTCGGAGAAAGATTCT
CAGCTTTCGTCAAAAACGCTCAGAGAGTTGTCATGTGGAACGAGGACGCCGGAACGATCT
CCGATATGACCTACAAGAACATCCCGTTCTATGTGAGCATCAGAAAATACGGTGTCTTTG
TGAACGATCCTGGAAAGGTGGACTTCGAAATCGCAACAGAACATGTGGAAAAGGTGCAGT
TCAGTGTGAAAGGAGAGACTCTGGACTATTTCATCATCGCCGGGAAAGATCTGAAAGAAG
TTCTGGAACGCTACACACTTCTCACAGGACGACCAGAACTTCCTCCTGCCTGGAGTTTCG
GACTCTGGCTCACCACATCCTTCACCACACAGTACGATGAGAGAACTGTGATGGAGTTCG
TGGATGGCATGAGAGAGCGTGACATACCCCTTCATGTCTTTCACTTCGACTGCTTCTGGA
TGAAGGAGTTTCACTGGGTGGATCTTGAGTGGAACAGGGAGAACTTCCCCGACCCTGAAG
GGTTGTTGAAACGTCTCAAAGAGAAGGGCCTGAAGGTGTGTGTCTGGATAAACCCCTATG
TCTCTCAGTTTTCGAGTCTCTTTGACGAGGGAAAAGAAAAGGGTTATTTCCTGAAAAAAC
CAGACGGAGATGTCTGGCAGACGGACGACTGGCAACCAGGAATGGCGATCATCGATTTCA
CGAATCCGGAAGTCAGAAAGTGGTTCGCTTCAAAACTGGAAAGATTGATAGATATGGGAG
TTGACTGTTTCAAGACGGACTTTGGAGAGAAGATTCCCACAGATGTGGTCTATTACGACG
GATCCGATCCTGAGAAGATGCACAACTACTACACCTATCTGTACAACAAAGTGGTCTTCG
AAACCATTGAGAGAAAACTCGGAAAGAGAAACGCTGTCGTCTTCGCAAGGTCTGCAACGG
CAGGGAGTCAGAAATTCCCGGTCCACTGGGGAGGAGATTGTCTGGCTTCCTATGAGTCCA
TGGCGGAAACCTTGAGAGGAGGTCTTTCTCTGGCACTGTGCGGTTTCGGTTTCTGGAGTC
ACGACATCGGAGGATTCGAGGACATCACAACACCGGATCTGTACAAGAGATGGGTGGCAT
TCGGTCTTCTGTCATCTCACAGCAGGCTCCACGGAAATTCGATGTACAAGGTTCCCTGGA
ACTTCGATGAGGAAGCGGTGGAGGTGCTCAGATTTTTCACGAAACTGAAGTGCAAGCTCA
TGCCCTATATATTCGCCAGCGCAGTCGAAGTACATGAGAGGGGAATCCCTGTCATGAGAC
CCATGATTCTTGAGTTTCCAGACGATCCCACCTGTCTCTATCTGGACAGACAGTACATGC
TGGGAGAATCACTCCTTGTCGCTCCGATCTTCAGCGAGACGGGAGAGGTGACCTACTACC
TTCCAGAGGGAGTCTGGACTCACTTTCTCACCGGCGAGAGGGTAGAAGGAGGAAGATGGA
GAACAGAAAAATACGACTACTTCGGACTCCCACTCTTTACAAGACCGAACTCCATAATTC
CGACAGGGTCCGTCGATGACAGGCCGGATTACGATTACGCAGACGGTGTCACATTGAACG
TTTTTGAAATTTCAAACAAAACAGCGCATGTTTACAACACACGGGGCGAGGTGGAATTGA
GTGTGAAAGTAGAGAGAAAAGGAAACGAGATACACGTTGAGGTCCTGAAGGACTCCAGAA
AACCATGGAAGCTGCTGTTCTGGAACGAAAGGCTTGAAGCTGTGGAAGGAGCTGAGACAA
GAGAACTAGAAAAAGGAACAGAGGTGGTTCTCAGCTTCCAGAGAGCGATTTTAAAGACAA
AATAACGCGACTTAATTAACTCTAGATAACTGAGAAGGAGATATACATACCCGGGT
Protein sequence predicted based on nucleotide sequence
MRFTEGLWRLREGVQLFRPEQVYEYSCDGKKLILRSPFRRVEHRGQTLQGPVFEIEISSP FENVIRIRFRHFKGVLEKPPYYEIYQDESFTPDIKETEGSFIFTSGKAKAIIRKNPFGVE FFYEDRFLTKSDLGYAVAPEGRFCLERLHLSVGEMIYGLGERFSAFVKNAQRVVMWNEDA GTISDMTYKNIPFYVSIRKYGVFVNDPGKVDFEIATEHVEKVQFSVKGETLDYFIIAGKD LKEVLERYTLLTGRPELPPAWSFGLWLTTSFTTQYDERTVMEFVDGMRERDIPLHVFHFD CFWMKEFHWVDLEWNRENFPDPEGLLKRLKEKGLKVCVWINPYVSQFSSLFDEGKEKGYF LKKPDGDVWQTDDWQPGMAIIDFTNPEVRKWFASKLERLIDMGVDCFKTDFGEKIPTDVV YYDGSDPEKMHNYYTYLYNKVVFETIERKLGKRNAVVFARSATAGSQKFPVHWGGDCLAS YESMAETLRGGLSLALCGFGFWSHDIGGFEDITTPDLYKRWVAFGLLSSHSRLHGNSMYK VPWNFDEEAVEVLRFFTKLKCKLMPYIFASAVEVHERGIPVMRPMILEFPDDPTCLYLDR QYMLGESLLVAPIFSETGEVTYYLPEGVWTHFLTGERVEGGRWRTEKYDYFGLPLFTRPN SIIPTGSVDDRPDYDYADGVTLNVFEISNKTAHVYNTRGEVELSVKVERKGNEIHVEVLK DSRKPWKLLFWNERLEAVEGAETRELEKGTEVVLSFQRAILKTK*
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Mutations:
None
Discrepancy:
None
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
ampicillin
Bacterial Selection Condition:
100 ug/mL ampicillin
Growth Condition:
Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:
Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results:
ProteinExpressed: Not_Applicable
ProteinPurified: Protein_Purified
SolubleProtein: Tested_Not_Soluble
Find experimental protocols in 282184
Recommended expression in:
Not Applicable
Vector Name:
pMH4
Synonyms:
pMH-4
Sequencing Primer:
Forward:
pBAD forward
Reverse:
alt_bad_rev
Description:
Bacterial expression vector, arabinose or T7 induced expression, adds N-terminal MGSDKIHHHHHH tag; amp resistance; restriction enyzme (Pml I/Pac I) or PIPE cloning.
Comments:
None
Size (bp):
5489
Parent Vector:
None
Properties:
PIPE cloning, bacterial expression, in vitro transcription, inducible expression, with tag/fusion/marker
Author Name:
Joint Center for Structural Genomics
Publications:
None
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
bacterial origin
ori
ColE1 bacterial origin of replication
3331
4013
inducible trxn activator protein gene
araC
araC cds
5463
4585
negative selection marker
ccdB
ccdB negative selection gene (may be gone in with-insert form)
1576
1785
promoter
T7
T7 promoter
290
310
promoter
araC
araC promoter
153
124
selectable marker
CmR
chloramphenicol resistance gene (CmR)
484
1140
selectable marker
AmpR
ampicillin resistance gene
2574
3233
tag
His
N-terminal 6xHis tag
364
381
trxn regulatory element
arabinose O1 operator
arabinose O1 operator
161
182
trxn regulatory element
arabinose O2 operator
arabinose O2 operator
5
23
trxn termination sequence
rrnB
rrnB T2 transcription terminator
2238
2264
