Patents, publications, theses, and dissertations referencing DNASU. Please click the links below to go directly to a category of interest.

Publications written by DNASU and the PSI:Biology-Materials Repository

PMID: 24225319
Seiler, C. Y., Park, J. G., Sharma, A., Hunter, P., Surapaneni, P., Sedillo, C., Field, J., Algar, R., Price, A., Steel, J., Throop, A., Fiacco, M., & LaBaer, J. (2013). DNASU plasmid and PSI:Biology-Materials repositories: resources to accelerate biological research. Nucleic acids research, 42(Database issue), D1253-D1260.

PMID: 21360289
Cormier, C. Y., Park, J. G., Fiacco, M., Steel, J., Hunter, P., Kramer, J., Singla, R., & LaBaer, J. (2011). PSI:Biology-materials repository: a biologist's resource for protein expression plasmids. Journal of structural and functional genomics, 12(2), 55-62.

PMID: 19906724
Cormier, C. Y., Mohr, S. E., Zuo, D., Hu, Y., Rolfs, A., Kramer, J., Taycher, E., Kelley, F., Fiacco, M., Turnbull, G., & LaBaer, J. (2010). Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community. Nucleic acids research, 38(Database issue), D743-D749.

*Please cite our most recent publication if you use a plasmid from DNASU in a publication

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Patents referencing DNASU

United States Patent Application US-20230201183-A1
Mazzulli, Joseph Robert (Chicago, IL, US), Stojkovska, Iva (Evanston, IL, US), Wani, Willayat Yousuf (Evanston, IL, US), June 29, 2023
Northwestern University (Evanston, IL, US)

United States Patent Application US-20230193322-A1
Standage-Beier, Kylie (Phoenix, AZ, US), Balachandran, Parithi (Coimbatore, IN), Brookhouser, Nicholas (Tempe, AZ, US), Brafman, David (Phoenix, AZ, US), Wang, Xiao (Chandler, AZ, US), June 22, 2023
CAS9 Fusion Proteins and Related Methods

United States Patent Application 20230165938-A1
Lucas, Robert (Manchester, Greater Manchester, GB), Rodgers, Jessica (Manchester, Greater Manchester, GB), Ballister, Edward Raymond (Manchester, Greater Manchester, GB), June 01, 2023
The University of Manchester (Manchester, GB)

United States Patent Application 20230159620-A1
Stitziel, Nathan (St. Louis, MO, US), Elenbaas, Jared (St. Louis, MO, US), Alisio, Arturo (St. Louis, MO, US), Jung, In-hyuk (St. Louis, MO, US), May 25, 2023
Washington University (St. Louis, MN, US)

United States Patent Application 20230101768-A1
Mukhopadhyay, Somshuvra (Austin, TX, US), Liu, Chunyi (Austin, TX, US), Smith, Donald (Santa Cruz, CA, US), March 30, 2023

United States Patent Application 11567088 B2
Labaer, Joshua (Chandler, AZ, US), Qiu, Ji (Chandler, AZ, US), Bian, Xiaofang (Mesa, AZ, US), Schatz, Desmond A. (Gainesville, FL, US), Wasserfall, Clive H. (Gainesville, FL, US), Atkinson, Mark A. (Gainesville, FL, US), January 31, 2023
Methods for diagnosis of type 1 diabetes

United States Patent Application 11543407 B2
Smith, Joseph (Tempe, AZ, US), Blain Christen, Jennifer (Chandler, AZ, US), Anderson, Karen (Scottsdale, AZ, US), Katchman, Benjamin (Tempe, AZ, US), January 3, 2023
Flexible optical biosensor for point of use multi-pathogen detection

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Publications referencing DNASU products and services

PMID: 37207905
Geddes, J. W., Bondada, V., Croall, D. E., Rodgers, D. W., & Gal, J. (2023). Impaired activity and membrane association of most calpain-5 mutants causal for neovascular inflammatory vitreoretinopathy. Biochimica et biophysica acta. Molecular basis of disease, 1869(6), 166747.

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Theses and Dissertations using specific plasmids from DNASU

Arizona State University
Sun, J. (2023). Cell Secreted Extracellular Vesicles Carrying Functional PSGL-1 Bind Activated Endothelial Cells and Platelets, and Co-Expression with tPA Promotes Thrombolytic Activity. ProQuest Dissertations Publishing

University of Tennessee
Elgin, Emily (2023). "Dental Calculus: Future in Forensics". Chancellor's Honors Program Projects.

Arizona State University
Lear, B. P. (2023). Adult Mammalian Central Nervous System Regeneration. ProQuest Dissertations Publishing

Arizona State University
Pitcairn, C. (2023). Autophagy Dysfunction in Parkinson's Disease and Related Synucleinopathies. ProQuest Dissertations Publishing

Harvard University
Yiu, S. P. T. (2023, May 1). Epstein–Barr virus evasion of intrinsic and innate immune pathways during the viral lytic cycle. Digital Access to Scholarship at Harvard.

Arizona State University
Standage-Beier, K. (2023). Engineering CRISPR Systems for Synthetic Biology. ProQuest Dissertations Publishing

Arizona State University
Pitcairn, C. (2023). Autophagy Dysfunction in Parkinson's Disease and Related Synucleinopathies. ProQuest Dissertations Publishing

Harvard University Graduate School of Arts and Sciences
Yiu, Stephanie Pei Tung. 2023. Epstein–Barr Virus Evasion of Intrinsic and Innate Immune Pathways During the Viral Lytic Cycle. ProQuest Dissertations Publishing

Arizona State University
Morton, H. (2023). Application of Lean Six Sigma on the Services of Dnasu Plasmid Repository (thesis). ProQuest Dissertations Publishing

Northeastern University
Kankanamge, L. S. P. (2023). Molecular approaches in identification of cancerous mutations and protein families. Doctoral dissertation, Northeastern University

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Surana R, Wang S, Xu W, Jablonski SA, Weiner LM (2014) IL4 Limits the Efficacy of Tumor-Targeted Antibody Therapy in a Murine Model. Cancer Immunol Res. 2014 Nov;2(11):1103-12. doi: 10.1158/2326-6066.CIR-14-0103. Epub 2014 Sep 9. PMID: 25204776

Karla Camacho-Soto , Javier Castillo-Montoya , Blake Tye , Luca O. Ogunleye , and Indraneel Ghosh (2014) Small Molecule Gated Split-Tyrosine Phosphatases and Orthogonal Split-Tyrosine Kinases. J. Am. Chem. Soc., November 19, 2014. PMID: 25409264

Chen Z-j and Ai H-w (2014). A Highly Responsive and Selective Fluorescent Probe for Imaging Physiological Hydrogen Sulfide. Biochemistry Biochemistry, 2014, 53 (37), pp 5966–5974 PMID: 25141269

Ghoshal A and Ghosh SS. (2014) Expression, Purification, and Therapeutic Implications of Recombinant sFRP1. Appl Biochem Biotechnol. 2014 Nov 30. [Epub ahead of print] PMID: 25432334

Ham H, Woolery AR, Tracy C, Stenesen D, Krämer H, Orth K. (2014) Unfolded protein response-regulated dFic reversibly AMPylates BiP during endoplasmic reticulum homeostasis. J Biol Chem. 2014 Nov 13. pii: jbc.M114.612515. [Epub ahead of print] PMID: 25395623

Yu X, Woolery AR, Luong P, Hao YH, Grammel M, Westcott N, Park J, Wang J, Bian X, Demirkan G, Hang HC, Orth K, LaBaer J. (2014) Copper-catalyzed azide-alkyne cycloaddition (click chemistry)-based Detection of Global Pathogen-host AMPylation on Self-assembled Human Protein Microarrays. Mol Cell Proteomics. 2014 Nov;13(11):3164-76. doi: 10.1074/mcp.M114.041103. Epub 2014 Jul 29. PMID: 25073739
GTPase clones

Anderson KS, Cramer DW, Sibani S, Wallstrom G, Wong J, Park J, Qiu J, Vitonis A, LaBaer J. (2014) An Autoantibody Signature for the Serologic Detection of Ovarian Cancer. J Proteome Res. 2014 Nov 3. [Epub ahead of print] PMID: 25365139
NAPPA Clones

Wen J, Xiao J, Rahdar M, Choudhury BP, Cui J, Taylor GS, Esko JD, Dixon JE.  (2014) Xylose phosphorylation functions as a molecular switch to regulate proteoglycan biosynthesis. Proc Natl Acad Sci U S A. 2014 Oct 20. pii: 201417993. [Epub ahead of print] PMID: 25331875

Brown LM, Rogers KE, Aroonsakool N, McCammon JA, Insel PA. (2014) Allosteric Inhibition of Epac: COMPUTATIONAL MODELING AND EXPERIMENTAL VALIDATION TO IDENTIFY ALLOSTERIC SITES AND INHIBITORS. J Biol Chem. 2014 Oct 17;289(42):29148-57. doi: 10.1074/jbc.M114.569319. Epub 2014 Sep 2. PMID: 25183009

Woolery AR, Yu X, LaBaer J, Orth K. (2014) AMPylation of Rho GTPases subverts multiple host signaling processes. J Biol Chem. 2014 Oct 9. pii: jbc.M114.601310. [Epub ahead of print] PMID: 25301945
GTPase plasmids

Shang J, Huang X, Du Z. (2014) The FP domains of PI31 and Fbxo7 have the same protein fold but very different modes of protein–protein interaction. J Biomol Struct Dyn. 2014 Sep 30:1-11. [Epub ahead of print] PMID: 25266262

Prados-Rosales R, Carreño LJ, Batista-Gonzalez A, Baena A, Venkataswamy MM, Xu J, Yu X, Wallstrom G, Magee DM, LaBaer J, Achkar JM, Jacobs WR Jr, Chan J, Porcelli SA, Casadevall A. (2014) Mycobacterial Membrane Vesicles Administered Systemically in Mice Induce a Protective Immune Response to Surface Compartments of Mycobacterium tuberculosis. MBio. 2014 Sep 30;5(5). pii: e01921-14. doi: 10.1128/mBio.01921-14. PMID: 25271291
Mycobacterium tuberculosis plasmids

Boswell-Casteel RC, Johnson JM, Duggan KD, Tsutsui Y, Hays FA. (2014) Overproduction and biophysical characterization of human HSP70 proteins. Protein Expr Purif. 2014 Sep 27. pii: S1046-5928(14)00210-1. doi: 10.1016/j.pep.2014.09.013. [Epub ahead of print] PMID: 25266791

Brown LM, Rogers KE, Aroonsakool N, McCammon JA, Insel PA. (2014)  Allosteric Inhibition of Epac: Computational Modeling and Experimental Validation to Identify Allosteric Sites and Inhibitors. J Biol Chem. 2014 Sep 2. pii: jbc.M114.569319. [Epub ahead of print] PMID: 25183009

Poirier V, Bach H, Av-Gay Y. (2014) Mycobacterium tuberculosis Promotes Anti-Apoptotic Activity of the Macrophage by PtpA-Dependent Dephosphorylation of Host GSK3α. . J Biol Chem. 2014 Sep 3. pii: jbc.M114.582502. [Epub ahead of print] PMID: 25187516

Zhou J, Deng Z, Chen Y, Gao Y, Wu D, Zhu G, Li L, Song W, Wang X, Wu K, He D. (2014) Overexpression of FABP7 promotes cell growth and predicts poor prognosis of clear cell renal cell carcinoma. Urol Oncol. 2014 Sep 2. pii: S1078-1439(14)00278-6. doi: 10.1016/j.urolonc.2014.08.001. [Epub ahead of print] PMID: 25192834

Heirbaut M, Beelen S, Strelkov SV, Weeks SD. (2014) Dissecting the Functional Role of the N-Terminal Domain of the Human Small Heat Shock Protein HSPB6. PLoS One. 2014 Aug 26;9(8):e105892. doi: 10.1371/journal.pone.0105892. eCollection 2014. PMID: 25157403

Chen ZJ, Ai HW. (2014) A Highly Responsive and Selective Fluorescent Probe to Image Physiological Hydrogen Sulfide. Biochemistry. 2014 Aug 20. [Epub ahead of print] PMID: 25141269

Petrosyan A, Holzapfel MS, Muirhead DE, Cheng PW. (2014) Restoration of Compact Golgi Morphology in Advanced Prostate Cancer Enhances Susceptibility to Galectin-1-induced Apoptosis by Modifying Mucin O-glycan Synthesis. Mol Cancer Res. 2014 Aug 1. pii: molcanres.0291.2014. [Epub ahead of print] PMID: 25086069

Satpute-Krishnan P, Ajinkya M, Bhat S, Itakura E, Hegde RS, Lippincott-Schwartz J. (2014) ER Stress-Induced Clearance of Misfolded GPI-Anchored Proteins via the Secretory Pathway. Cell. 2014 Jul 31;158(3):522-33. doi: 10.1016/j.cell.2014.06.026. PMID: 25083867

Sin C, Li H, Crawford DA. (2014) Transcriptional Regulation by FOXP1, FOXP2, and FOXP4 Dimerization. J Mol Neurosci. 2014 Jul 16. [Epub ahead of print] PMID: 25027557

Wolter JM, Kotagama K, Pierre-Bez AC, Firago M, Mangone M. (2014) 3'LIFE: a functional assay to detect miRNA targets in high-throughput. Nucleic Acids Res. 2014 Jul 29. pii: gku626. [Epub ahead of print] PMID: 25074381

Subramonian D, Raghunayakula S, Olsen JV, Beningo KA, Paschen W, Zhang XD. (2014) Analysis of Changes in SUMO-2/3 Modification during Breast Cancer Progression and Metastasis. J Proteome Res. 2014 Jul 29. [Epub ahead of print] PMID: 25072996

Yu X, Woolery AR, Luong P, Hao YH, Grammel M, Westcott N, Park J, Wang J, Bian X, Demirkan G, Hang HC, Orth K, LaBaer J. (2014) Click chemistry-based detection of global pathogen-host AMPylation on self-assembled human protein microarrays. Mol Cell Proteomics. 2014 Jul 29. pii: mcp.M114.041103. [Epub ahead of print] PMID: 25073739
NAPPA Clones

Cox N, Pilling D, Gomer RH. (2014) Distinct Fcγ Receptors Mediate the Effect of Serum Amyloid P on Neutrophil Adhesion and Fibrocyte Differentiation. J Immunol. 2014 Jul 14. pii: 1400281. [Epub ahead of print] PMID: 25024390

Valkevich EM, Sanchez NA, Ge Y, Strieter ER. (2014) Middle-Down Mass Spectrometry Enables Characterization of Branched Ubiquitin Chains. Biochemistry. 2014 Jul 14. [Epub ahead of print] PMID: 25023374

Renaudin X, Guervilly JH, Aoufouchi S, Rosselli F. (2014) Proteomic analysis unveils a FANCA-modulated neddylation pathway involved in CXCR5 membrane targeting and cell mobility. J Cell Sci. 2014 Jul 11. pii: jcs.150706. [Epub ahead of print] PMID: 25015289

Kirschke E, Goswami D, Southworth D, Griffin PR, Agard DA. (2014) Glucocorticoid Receptor Function Regulated by Coordinated Action of the Hsp90 and Hsp70 Chaperone Cycles. Cell. 2014 Jun 19;157(7):1685-97. doi: 10.1016/j.cell.2014.04.038. PMID: 24949977

Kastrati I, Canestrari E, Frasor J. (2014) PHLDA1 expression is controlled by an estrogen receptor-NFκB-miR-181 regulatory loop and is essential for formation of ER+ mammospheres. Oncogene. 2014 Jun 23. doi: 10.1038/onc.2014.180. [Epub ahead of print] PMID: 24954507

Bragazzi NL, Spera R, Pechkova E, Nicolini C (2014) NAPPA-Based Nanobiosensors for the Detection of Proteins and of Protein-Protein Interactions Relevant to Cancer. J Carcinog & Mutagen 5:166. doi: 10.4172/2157-2518.1000166

Aretz J, Wamhoff E, Hanske J, Heymann D and Rademacher C.  (2014) Computational and experimental prediction of human C-type lectin receptor druggability. Front. Immunol. 5:323. doi:10.3389/fimmu.2014.00323

Jarrett SG, Horrell EM, Christian PA, Vanover JC, Boulanger MC, Zou Y, D'Orazio JA. (2014) PKA-Mediated Phosphorylation of ATR Promotes Recruitment of XPA to UV-Induced DNA Damage. Mol Cell. 2014 Jun 19;54(6):999-1011. doi: 10.1016/j.molcel.2014.05.030. PMID: 24950377

Schulte T, Löfling J, Mikaelsson C, Kikhney A, Hentrich K, Diamante A, Ebel C, Normark S, Svergun D, Henriques-Normark B, Achour A. (2014) The basic keratin 10-binding domain of the virulence-associated pneumococcal serine-rich protein PsrP adopts a novel MSCRAMM fold. Open Biol. 2014 Jan 15;4:130090. doi: 10.1098/rsob.130090. PMID: 24430336

Ryu Y, Hall CP, Reynolds CP, Kang MH. (2014) Caspase-dependent Mcl-1 cleavage and effect of Mcl-1 phosphorylation in ABT-737-induced apoptosis in human acute lymphoblastic leukemia cell lines. Exp Biol Med (Maywood). 2014 Jun 20. pii: 1535370214538745. [Epub ahead of print] PMID: 24951472

Yu, X., Bian, X., Throop, A., Song, L., Del Moral, L., Park, J., Seiler, C., Fiacco, M., Steel, J., Hunter, P., Saul, J., Wang, J., Qiu, J., Pipas, J.M., and LaBaer, J. (2014) Exploration of Panviral Proteome: High-Throughput Cloning and Functional Implications in Virus-host Interactions. Theranostics 4(8): 808-822. doi: 10.7150/thno.8255

Brady OA, Zhou X, and Hu F. (2014) Regulated intramembrane proteolysis of the frontotemporal lobar degeneration (FTLD) risk factor,TMEM106B, bySignal Peptide Peptidase-like 2a (SPPL2a). J Biol Chem. 2014 May 28. pii: jbc.M113.515700. [Epub ahead of print] PMID: 24872421

Feng J, De Jesus PD, Su V, Han S, Gong D, Wu NC, Tian Y, Li X, Wu TT, Chanda SK, Sun R. (2014) RIOK3 is an adaptor protein required for IRF3-mediated antiviral type I interferon production. J Virol. May 7. [Epub ahead of print] PMID: 24807708

Saul J, Petritis B, Sau S, Rauf F, Gaskin M, Ober-Reynolds B, Mineyev I, Magee M, Chaput J, Qiu J, Labaer J. (2014) Development of a full-length human protein production pipeline. Protein Sci. 2014 May 8. doi: 10.1002/pro.2484. [Epub ahead of print] PMID: 24806540

Samasilp P, Lopin K, Chan SA, Ramachandran R, Smith C. (2014) Syndapin 3 Modulates Fusion Pore Expansion in Mouse Neuroendocrine Chromaffin Cells. Am J Physiol Cell Physiol. 2014 Feb 5. [Epub ahead of print] PMID: 24500282

Yang Yang, Guan Wang, Xiaolan Huang and Zhihua Dua. (2014) Expression, purification and crystallization of the SKICH domain of human TAX1BP1. Acta Crystallographica Section F Structural Biology Communications

Vörös J, Urbanek A, Rautureau GJ, O'Connor M, Fisher HC, Ashcroft AE, Ferguson N. (2014) Large-scale production and structural and biophysical characterizations of the human hepatitis B virus polymerase. J Virol. 2014 Mar;88(5):2584-99. doi: 10.1128/JVI.02575-13. Epub 2013 Dec 18. PMID: 24352439

Skibinski A, Breindel JL, Prat A, Galván P, Smith E, Rolfs A, Gupta PB, Labaer J, Kuperwasser C. (2014) The Hippo Transducer TAZ Interacts with the SWI/SNF Complex to Regulate Breast Epithelial Lineage Commitment. Cell Rep. 2014 Mar 5. pii: S2211-1247(14)00152-1. doi: 10.1016/j.celrep.2014.02.038. [Epub ahead of print]  PMID: 24613358
Transcription Factor Collection

Ito YA, Goping IS, Berry F, Walter MA. (2014)  Dysfunction of the stress-responsive FOXC1 transcription factor contributes to the earlier-onset glaucoma observed in Axenfeld-Rieger syndrome patients. Cell Death Dis. 2014 Feb 20;5:e1069. doi: 10.1038/cddis.2014.8. PMID: 24556684

Selyunin AS, Reddick LE, Weigele BA, Alto NM. (2014) Selective Protection of an ARF1-GTP Signaling Axis by a Bacterial Scaffold Induces Bidirectional Trafficking Arrest. Cell Rep. 2014 Feb 25. pii: S2211-1247(14)00074-6. doi: 10.1016/j.celrep.2014.01.040. [Epub ahead of print] PMID: 24582959

Morizono K, Chen IS. (2014) The role of phosphatidylserine receptors in enveloped virus infection. J Virol. 2014 Jan 29. [Epub ahead of print] PMID: 24478428

Bose SK, Kim H, Meyer K, Wolins N, Davidson NO, Ray R. (2014) FORKHEAD BOX TRANSCRIPTION FACTOR REGULATION AND LIPID ACCUMULATION BY HEPATITIS C VIRUS. J Virol. 2014 Jan 29. [Epub ahead of print] PMID: 24478438

Schulte T, Löfling J, Mikaelsson C, Kikhney A, Hentrich K, Diamante A, Ebel C, Normark S, Svergun D, Henriques-Normark B, Achour A. (2014)  The basic keratin 10-binding domain of the virulence-associated pneumococcal serine-rich protein PsrP adopts a novel MSCRAMM fold. Open Biol. Jan 15;4(1):130090. doi: 10.1098/rsob.130090. PMID: 24430336

Brodie SA, Li G, El-Kommos A, Kang H, Ramalingam SS, Behera M, Gandhi K, Kowalski J, Sica GL, Khuri FR, Vertino PM, Brandes JC. (2014) Class I HDACs are mediators of smoke-carcinogen induced stabilization of DNMT1 and serve as promising targets for chemoprevention of lung cancer.  Cancer Prev Res (Phila).  Jan 17. [Epub ahead of print] PMID: 24441677

Kincaid RP, Burke JM, Cox JC, de Villiers EM, Sullivan CS. (2013) A Human Torque Teno Virus Encodes a MicroRNA That Inhibits Interferon Signaling. PLoS Pathog. Dec;9(12):e1003818. doi: 10.1371/journal.ppat.1003818. Epub 2013 Dec 19. PMID: 24367263

Renaud SJ, Kubota K, Rumi MA, Soares MJ. (2013) The FOS Transcription Factor Family Differentially Controls Trophoblast Migration and Invasion. J Biol Chem. Dec 30. [Epub ahead of print] PMID: 24379408

Zhu F, Gamboa M, Farruggio AP, Hippenmeyer S, Tasic B, Schüle B, Chen-Tsai Y, Calos MP. (2013) DICE, an efficient system for iterative genomic editing in human pluripotent stem cells. Nucleic Acids Res. Dec 4. [Epub ahead of print] PMID: 24304893

Young E, Zheng ZY, Wilkins AD, Jeong HT, Li M, Lichtarge O, Chang EC. (2013) Regulation of Ras localization and cell transformation by evolutionarily conserved palmitoyltransferases.  Mol Cell Biol. 2013 Nov 18. [Epub ahead of print]  PMID: 24248599

Potts MB, Kim HS, Fisher KW, Hu Y, Carrasco YP, Bulut GB, Ou YH, Herrera-Herrera ML, Cubillos F, Mendiratta S, Xiao G, Hofree M, Ideker T, Xie Y, Huang LJ, Lewis RE, MacMillan JB, White MA. (2013) Using functional signature ontology (FUSION) to identify mechanisms of action for natural products. Sci Signal. 2013 Oct 15;6(297):ra90. doi: 10.1126/scisignal.2004657. PMID: 24129700

Jiyuan Ke, Kaleeckal G. Harikumar, Clara Erice, Chen Chen, Xin Gu, Liren Wang, Naomi Parker, Zhihong Cheng, Wenqing Xu, Bart O. Williams, Karsten Melcher, Laurence J. Miller and H. Eric Xu (2013). Structure and function of Norrin in assembly and activation of a Frizzled 4–Lrp5/6 complex. Genes & Dev. 27: 2305-2319 doi:10.1101/gad.228544.113 PMID: 24186977

Berre S, Gaudin R, Cunha de Alencar B, Desdouits M, Chabaud M, Naffakh N, Rabaza-Gairi M, Gobert FX, Jouve M, Benaroch P. (2013) CD36-specific antibodies block release of HIV-1 from infected primary macrophages and its transmission to T cells. J Exp Med. 2013 Oct 21. [Epub ahead of print] PMID: 24145510

Goichberg P, Kannappan R, Cimini M, Bai Y, Sanada F, Sorrentino A, Signore S, Kajstura J, Rota M, Anversa P, Leri A. (2013) Age-associated defects in EphA2 signaling impair the migration of human cardiac progenitor cells. Circulation. 2013 Nov 12;128(20):2211-23. doi: 10.1161/CIRCULATIONAHA.113.004698. Epub 2013 Oct 18. PMID: 24141256

Plummer JT, Evgrafov OV, Bergman MY, Friez M, Haiman CA, Levitt P, Aldinger KA. (2013) Transcriptional regulation of the MET receptor tyrosine kinase gene by MeCP2 and sex-specific expression in autism and Rett syndrome. Transl Psychiatry. 2013 Oct 22;3:e316. doi: 10.1038/tp.2013.91. PMID: 24150225

Miersch S, Bian X, Wallstrom G, Sibani S, Logvinenko T, Wasserfall CH, Schatz D, Atkinson M, Qiu J, Labaer J. (2013)  Serological autoantibody profiling of type 1 diabetes by protein arrays. J Proteomics. 2013 Oct 19. pii: S1874-3919(13)00530-7. doi: 10.1016/j.jprot.2013.10.018. [Epub ahead of print] PMID: 24148850
Various pANT7_cGST plasmids

Prokop JW, Rauscher Iii FJ, Peng H, Liu Y, Araujo FC, Watanabe I, Reis FM, Milsted A. (2013) MAS promoter regulation: a role of Sry and tyrosine nitration of the KRAB domain of ZNF274 as a feedback mechanism. Clin Sci (Lond). Oct 15. [Epub ahead of print] PMID: 24128372

Hildick-Smith GJ, Cooney JD, Garone C, Kremer LS, Haack TB, Thon JN, Miyata N, Lieber DS, Calvo SE, Akman HO, Yien YY, Huston NC, Branco DS, Shah DI, Freedman ML, Koehler CM, Italiano JE Jr, Merkenschlager A, Beblo S, Strom TM, Meitinger T, Freisinger P, Donati MA, Prokisch H, Mootha VK, Dimauro S, Paw BH. (2013) Macrocytic Anemia and Mitochondriopathy Resulting from a Defect in Sideroflexin. Am J Hum Genet. Oct 9. pii: S0002-9297(13)00424-2. doi: 10.1016/j.ajhg.2013.09.011. [Epub ahead of print] PMID: 24119684

Mohan S, Glushakov AV, Decurnou A, Narumiya S, Doré S. (2013)  Contribution of PGE2 EP1 receptor in hemin-induced neurotoxicity. Front Mol Neurosci. Oct 7;6:31. PMID: 24109429

Shang J, Wang G, Yang Y, Huang X, Du Z. (2013) Expression, purification and crystallization of the FP domain of the human F-box protein Fbxo7. Acta Crystallogr Sect F Struct Biol Cryst Commun. Oct 1;69(Pt 10):1097-1099. Epub 2013 Sep 28. PMID: 24100556

Mohit Narwal, Jarkko Koivunen, Teemu Haikarainen, Ezeogo Obaji, Ongey Elvis, Legala, Harikanth Venkannagari, Päivi Joensuu, Taina Pihlajaniemi , and Lari Lehtiö. (2013) Discovery of Tankyrase Inhibiting Flavones with Increased Potency and Isoenzyme Selectivity.  J Med Chem. Oct 11. [Epub ahead of print]PMID: 24116873

Davda D, El Azzouny MA, Tom CT, Hernandez JL, Majmudar JD, Kennedy RT, Martin BR. (2013) Profiling targets of the irreversible palmitoylation inhibitor 2-bromopalmitate. ACS Chem Biol. 2013 Sep 20;8(9):1912-7. doi: 10.1021/cb400380s. Epub 2013 Jul 25. PMID: 23844586

Wellensiek BP, Larsen AC, Flores J, Jacobs BL, Chaput JC. (2013) A leader sequence capable of enhancing RNA expression and protein synthesis in mammalian cells. Protein Sci. 2013 Aug 1. doi: 10.1002/pro.2325. [Epub ahead of print] PMID: 23908110

Goel RK, Miah S, Black K, Kalra N, Dai C, Lukong KE. (2013) The unique N-terminal region of SRMS regulates enzymatic activity and phosphorylation of its novel substrate Dok1. FEBS J. Jul 3. doi: 10.1111/febs.12420. [Epub ahead of print] PMID: 23822091

Nchoutmboube JA, Viktorova EG, Scott AJ, Ford LA, Pei Z, et al. (2013) Increased Long Chain acyl-Coa Synthetase Activity and Fatty Acid Import Is Linked to Membrane Synthesis for Development of Picornavirus Replication Organelles. PLoS Pathog 9(6): e1003401. doi:10.1371/journal.ppat.1003401 PMID: 23762027

Kampa-Schittenhelm KM, Heinrich MC, Akmut F, Rasp KH, Illing B, Döhner H, Döhner K, Schittenhelm MM. (2013) Cell cycle-dependent activity of the novel dual PI3K-MTORC1/2 inhibitor NVP-BGT226 in acute leukemia. Mol Cancer. 2013 May 24;12(1):46. [Epub ahead of print] PMID: 23705826

Soetedjo L, Glover DA and Jin H. (2013) Targeting of vasoactive intestinal peptide receptor 2, VPAC2, a secretin family G-protein coupled receptor, to primary cilia. Open Biology Posted Online
May 24, 2013; doi: 10.1242/​bio.20134747 PMID: 23862016

Emrick D, Ravichandran A, Gosai J, Lu S, Gordon DM, Smith L. (2013) The Antifungal Occidiofungin Triggers an Apoptotic Mechanism of Cell Death in Yeast. J Nat Prod. May 24;76(5):829-38. doi: 10.1021/np300678e. Epub 2013 May 14. PMID: 23672235

Yu X, Wallstrom G, Magee DM, Qiu J, Mendoza DE, Wang J, Bian X, Graves M, Labaer J. (2013) Quantifying antibody binding on protein microarrays using microarray nonlinear calibration. Biotechniques. May;54(5):257-64. doi: 10.2144/000114028. PMID: 23662896

Choi HK, Yoo JY, Jeong MH, Park SY, Shin DM, Jang SW, Yoon HG, Choi KC. (2013) Protein Kinase A phosphorylates NCoR to enhance its nuclear translocation and repressive function in human prostate cancer cells. J Cell Physiol. Jun;228(6):1159-65. doi: 10.1002/jcp.24269. PMID: 23129261

Kim E, Lu HC, Zoghbi HY, Song JJ. (2013) Structural basis of protein complex formation and reconfiguration by polyglutamine disease protein Ataxin-1 and Capicua. Genes Dev.  Mar 15;27(6):590-5. doi: 10.1101/gad.212068.112. PMID: 23512657

Kampa-Schittenhelm KM, Heinrich MC, Akmut F, Döhner H, Döhner K, Schittenhelm MM. (2013) Quizartinib (AC220) is a potent second generation class III tyrosine kinase inhibitor that displays a distinct inhibition profile against mutant-FLT3, -PDGFRA and -KIT isoforms. Mol Cancer. Mar 7;12(1):19. [Epub ahead of print] PMID: 23497317

Filippova EV, Weston LA, Kuhn ML, Geissler B, Gehring AM, Armoush N, Adkins CT, Minasov G, Dubrovska I, Shuvalova L, Winsor JR, Lavis LD, Satchell KJ, Becker DP, Anderson WF, Johnson RJ. (2013) J Biol Chem. 2013 Apr 12;288(15):10522-35. doi: 10.1074/jbc.M112.446625. Epub 2013 Feb 19. PMID: 23430251

Okamoto Y, Bernstein JD, Shikano S. (2013) Role of C-terminal Membrane-Proximal Basic Residues in Cell Surface Trafficking of HIV Coreceptor GPR15. J Biol Chem. Feb 19. [Epub ahead of print] PMID: 23430259

French JB, Zhao H, An S, Niessen S, Deng Y, Cravatt BF, Benkovic SJ. (2013) Hsp70/Hsp90 chaperone machinery is involved in the assembly of the purinosome. Proc Natl Acad Sci U S A. Feb 12;110(7):2528-33. doi: 10.1073/pnas.1300173110. Epub 2013 Jan 28. PMID: 23359685

Bansal N, Zhang M, Bhaskar A, Itotia P, Lee E, Shlyakhtenko LS, Lam TT, Fritz A, Berezney R, Lyubchenko YL, Stafford WF, Thapar R. (2013) Assembly of the SLIP1-SLBP Complex on Histone mRNA Requires Heterodimerization and Sequential Binding of SLBP Followed by SLIP1. Biochemistry Jan 22;52(3):520-36. doi: 10.1021/bi301074r. Epub 2013 Jan 11. PMID: 23286197

Brooks CL, Morrison M, Lemieux MJ. (2013) Rapid expression screening of eukaryotic membrane proteins in pichia pastoris. Protein Science Jan 22. doi: 10.1002/pro.2223. [Epub ahead of print] PMID: 23339074

Aras S, Pak O, Sommer N, Finley R Jr, Hüttemann M, Weissmann N, Grossman LI. (2013) Oxygen-dependent expression of cytochrome c oxidase subunit 4-2 gene expression is mediated by transcription factors RBPJ, CXXC5 and CHCHD2. Nucleic Acids Research 2013 Jan 8. [Epub ahead of print] PMID: 23303788

Chakrabarty A, Bhola NE, Sutton C, Ghosh R, Kuba MG, Dave B, Chang JC, Arteaga CL. (2013) Trastuzumab-Resistant Cells Rely on a HER2-PI3K-FoxO-Survivin Axis and Are Sensitive to PI3K Inhibitors. Cancer Research Feb 1;73(3):1190-200. doi: 10.1158/0008-5472.CAN-12-2440. Epub 2012 Nov 29. PMID: 23204226

Manzano-Román R, Díaz-Martín V, González-González M, Matarraz S, Álvarez-Prado AF, LaBaer J, Orfao A, Pérez-Sánchez R, Fuentes M. (2012)  Self-assembled protein arrays from an Ornithodoros moubata salivary gland expression library. Journal of Proteome Research Dec 7;11(12):5972-82. doi: 10.1021/pr300696h. Epub 2012 Nov 20. PMID: 23140423
pANT7_cGST clones

Patel D, Schultz LW, Umland TC. (2012)  Influenza A polymerase subunit PB2 possesses overlapping binding sites for polymerase subunit PB1 and human MAVS proteins. Virus Research  Dec 12. pii: S0168-1702(12)00465-0. doi: 10.1016/j.virusres.2012.12.003. [Epub ahead of print] PMID: 23246644

Wang J, Barker K, Steel J, Park J, Saul J, Festa F, Wallstrom G, Yu X, Bian X, Anderson KS, Figueroa J, Labaer J, Qiu J. (2012) A versatile protein microarray platform enabling antibody profiling against denatured proteins. Proteomics Clin Appl. Oct 2. doi: 10.1002/prca.201200062. [Epub ahead of print] PMID: 23027520
pANT7_cGST clones

Festa F, Rollins SM, Vattem K, Hathaway M, Lorenz P, Mendoza EA, Yu X, Qiu J, Kilmer G, Jensen P, Webb B, Ryan ET, LaBaer J. (2012) Robust microarray production of freshly expressed proteins in a human milieu. Proteomics Clin Appl.  Oct 2. doi: 10.1002/prca.201200063. [Epub ahead of print] PMID: 23027544
pANT7_cGST clones

Yoo JY, Choi HK, Choi KC, Park SY, Ota I, Yook JI, Lee YH, Kim K, Yoon HG. (2012) Nuclear hormone receptor corepressor promotes esophageal cancer cell invasion by transcriptional repression of interferon-γ-inducible protein 10 in a casein kinase 2-dependent manner. Mol Biol Cell.  Aug;23(15):2943-54. Epub 2012 Jun 6. PMID: 22675025

Kluza J, Corazao-Rozas P, Touil Y, Jendoubi M, Maire C, Guerreschi P, Jonneaux A, Ballot C, Balayssac S, Valable S, Corroyer-Dulmont A, Bernaudin M, Malet-Martino M, de Lassalle EM, Maboudou P, Formstecher P, Polakowska R, Mortier L, Marchetti P. (2012) Inactivation of the HIF-1α/PDK3 Signaling Axis Drives Melanoma toward Mitochondrial Oxidative Metabolism and Potentiates the Therapeutic Activity of Pro-Oxidants. Cancer Research.  Oct 1;72(19):5035-47. doi: 10.1158/0008-5472.CAN-12-0979. Epub 2012 Aug 3. PMID: 22865452

Tagliabracci VS, Engel JL, Wen J, Wiley SE, Worby CA, Kinch LN, Xiao J, Grishin NV, Dixon JE. (2012) Secreted kinase phosphorylates extracellular proteins that regulate biomineralization. Science. Jun 1;336(6085):1150-3. doi: 10.1126/science.1217817. Epub 2012 May 10. PMID: 22582013

Gibson DS, Qiu J, Mendoza EA, Barker K, Rooney ME, Labaer J. (2012) Circulating and synovial antibody profiling of juvenile arthritis patients by nucleic acid programmable protein arrays. Arthritis Res Ther. Apr 17;14(2):R77.  PMID: 22510425
pANT7_cGST clones

Bislev SL, Kusebauch U, Codrea MC, Beynon RJ, Harman VM, Røntved CM, Aebersold R, Moritz RL, Bendixen E. (2012) Quantotypic properties of QconCAT peptides targeting bovine host response to Streptococcus uberis. J Proteome Res. Mar 2;11(3):1832-43. Epub 2012 Feb 8. PMID: 22256911

Griffiths S, Byrne RT, Antson AA, Whelan F. (2012)  Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of human dihydrouridine synthase. Acta Crystallogr Sect F Struct Biol Cryst Commun. Mar 1;68(Pt 3):333-6. Epub 2012 Feb 22. PMID: 22442237

Gorbacheva MA, Yarosh AG, Dorovatovskii PV, Rakitina TV, Boiko KM, Korzhenevskii DA, Lipkin AV, Popov VO and Shumilin IA. (2012)  A new approach to studying the structural and functional properties of proteins with unknown functions. Russian Journal of Bioorganic Chemistry.  Jan-Feb 38(1): 83-88. PMID: 22792712

Stergachis AB, MacLean B, Lee K, Stamatoyannopoulos JA, MacCoss MJ. (2011) Rapid empirical discovery of optimal peptides for targeted proteomics. Nature Methods Nov 6;8(12):1041-3. doi: 10.1038/nmeth.1770. PMID: 22056677
pANT7_cGST clones

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Publications using or referencing PSI:Biology-MR Plasmids

Elshahawi SI, Ramelot TA, Seetharaman J, Chen J, Singh S, Yang Y, Pederson K, Kharel MK, Xiao R, Lew S, Yennamalli RM, Miller MD, Wang F, Tong L, Montelione GT, Kennedy MA, Bingman CA, Zhu H, Phillips GN Jr, Thorson JS. (2014) Structure-guided functional characterization of enediyne self-sacrifice resistance proteins, CalU16 and CalU19. ACS Chem Biol. 2014 Oct 17;9(10):2347-58. doi: 10.1021/cb500327m. Epub 2014 Aug 13. PMID: 25079510

Ticak T, Kountz DJ, Girosky KE, Krzycki JA, Ferguson DJ Jr (2014). A nonpyrrolysine member of the widely distributed trimethylamine methyltransferase family is a glycine betaine methyltransferase. Proc Natl Acad Sci U S A. 2014 Oct 13. pii: 201409642. [Epub ahead of print] PMID: 25313086

Driggers CM, Hartman SJ, Karplus PA. (2014) Structures of - and Gln-type bacterial cysteine dioxygenase homologs. Protein Sci. 2014 Oct 11. doi: 10.1002/pro.2587. [Epub ahead of print] PMID: 25307852

Gong Z1, Kessans SA, Song L, Dörner K, Lee HH, Meador LR, LaBaer J, Hogue BG, Mor TS, Fromme P. (2014) Recombinant expression, purification and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41. Protein Sci. 2014 Aug 23. doi: 10.1002/pro.2540. [Epub ahead of print] PMID: 25155369

*Bruno AE, Ruby AM, Luft JR, Grant TD, Seetharaman J, Montelione GT, Hunt JF, Snell EH.  (2014) Comparing chemistry to outcome: the development of a chemical distance metric, coupled with clustering and hierarchal visualization applied to macromolecular crystallography. PLoS One. 2014 Jun 27;9(6):e100782. doi: 10.1371/journal.pone.0100782. eCollection 2014. PMID: 24971458

Manjasettya BA, Chancec MR, Burley SK, Panjikarf S, Almo SC. (2014) Crystal structure of Clostridium acetobutylicum aspartate kinase (CaAk): An important allosteric enzyme for amino acids production. Biotechnology Reports Volume 3, September 2014, Pages 73–85. PMID: 25170437

Harbers M. (2014) Wheat Germ Systems for Cell-Free Protein Expression. FEBS Lett. Jun 12. pii: S0014-5793(14)00471-2. doi: 10.1016/j.febslet.2014.05.061. [Epub ahead of print] PMID: 24931374
Wheat Germ Expression Vectors

Liu EY, Russ J, Wu K, Neal D, Suh E, McNally AG, Irwin DJ, Van Deerlin VM, Lee EB. (2014)  C9orf72 hypermethylation protects against repeat expansion-associated pathology in ALS/FTD. Acta Neuropathol. 2014 May 8. [Epub ahead of print] PMID: 24806409

Hauke Drechsler, Toni McHugh, Martin R Singleton, Nicholas J Carter, Andrew D McAinsh. (2014) The Kinesin-12 Kif15 is a processive track-switching tetramer. March 25, 2014 eLife 2014;3:e01724 PMID: 24668168

Cragle C, Macnicol AM. (2014) Musashi-directed translational activation of target mRNAs is mediated by the poly[A] polymerase, Germline Development-2.  J Biol Chem. 2014 Mar 18. [Epub ahead of print] PMID: 24644291

Hilde Lysvand, Lars Hagen, Lidija Klubick, Geir Slupphaug, Ole-Jan Iversen (2014) Psoriasis pathogenesis — Pso p27 is generated from SCCA1 with chymase. PMID: 24560885

Stark JL, Mehla K, Chaika N, Acton TB, Xiao R, Singh PK, Montelione GT, Powers R. (2014) The Structure and Function of Human DnaJ Homolog Subfamily A Member 1 (DNAJA1) and Its Relationship to Pancreatic Cancer. Biochemistry. 2014 Feb 10. [Epub ahead of print] PMID: 24512202

Gall DL, Kim H, Lu F, Donohue TJ, Noguera DR, Ralph J. (2014) Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway. J Biol Chem. 2014 Feb 7. [Epub ahead of print] PMID: 24509858

Guest Editors: Alessandro Paiardini, Barbara Cellini, Ashley M. Buckle, and Roberto Contestabile . PLP-Dependent Enzymes. BioMed Research International Volume 2014 (2014), Article ID 856076, 2 pages PMID: 24527459

Bo Kong, and Grace L. Guo. (2014) Soluble Expression of Disulfide Bond Containing Proteins FGF15 and FGF19 in the Cytoplasm of Escherichia coli. PLOS One. DOI: 10.1371/journal.pone.0085890 PMID: 24465767

Tatyana A. Lyakhova, Jefferson D. Knight. (2013) The C2 domains of granuphilin are high-affinity sensors for plasma membrane lipids. Chem Phys Lipids. Oct 31. pii: S0009-3084(13)00137-0. doi: 10.1016/j.chemphyslip.2013.10.009. [Epub ahead of print] PMID: 24184645

Octavia Y. Goodwin, Maggie S. Thomasson, Aaron J. Lin, Michelle M. Sweeney, Megan A. Macnaughtan (2013) E. coli sabotages the in vivo production of O-linked β-N-acetylglucosamine-modified proteins, Journal of Biotechnology, Available online 16 October 2013, PMID: 24140293

Barba M, Dutoit R, Legrain C, Labedan B. (2013) Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism. BMC Syst Biol. Oct 5;7(1):99. [Epub ahead of print] PMID: 24093154

Alessandra Astegno, Alejandro Giorgetti, Alessandra Allegrini, Barbara Cellini, and Paola Dominici. (2013) Characterization of C-S Lyase from C. diphtheriae: A Possible Target for New Antimicrobial Drugs. BioMed Research International. Volume 2013 (2013), Article ID 701536, 13 pages PMID: 24106714

Da Fonseca I, Kizjakina K, Sobrado P. (2013) UDP-galactopyranose mutases from Leishmania species that cause 4 visceral and cutaneous leishmaniasis. Arch Biochem Biophys. Sep 3. pii: S0003-9861(13)00257-9. doi: 10.1016/ [Epub ahead of print] PMID: 24012809

Andre C, Kim SW, Yu XH, Shanklin J. (2013) Fusing catalase to an alkane-producing enzyme maintains enzymatic activity by converting the inhibitory byproduct H2O2 to the cosubstrate O2. Proc Natl Acad Sci U S A.  Feb 19;110(8):3191-6. doi: 10.1073/pnas.1218769110. Epub 2013 Feb 7. PMID: 23391732

Liu J, Li F, Rozovsky S. (2013) The intrinsically disordered membrane protein selenoprotein s is a reductase in vitro. Biochemistry. May 7;52(18):3051-61. doi: 10.1021/bi4001358. Epub 2013 Apr 24. PMID: 23566202

Thompson J, Pikis A, Rich J, Hall BG, Withers SG. (2013) α-Galacturonidase(s): A new class of Family 4 glycoside hydrolases with strict specificity and a unique CHEV active site motif. FEBS Lett. Mar 18;587(6):799-803. doi: 10.1016/j.febslet.2013.02.004. Epub 2013 Feb 14. PMID: 23416295

Xu A, Desai AM, Brenner SE, Kirsch JF. (2013) A continuous fluorescence assay for the characterization of Nudix hydrolases. Anal Biochem. Jun 15;437(2):178-84. doi: 10.1016/j.ab.2013.02.023. Epub 2013 Mar 7. PMID: 23481913

Singh S, Chang A, Helmich KE, Bingman CA, Wrobel RL, Beebe ET, Makino SI, Aceti DJ, Dyer K, Hura GL, Sunkara M, Morris AJ, Phillips GN, Thorson JS. (2013) Structural and functional characterization of CalS11, the TDPrhamnose 3’-O-methyltransferase involved in calicheamicin biosynthesis. ACS Chem Biol.  May 10. [Epub ahead of print] PMID: 23662776

Das D, Lee WS, Grant JC, Chiu HJ, Farr CL, Vance J, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Kornfeld S, Wilson IA. (2013)  Structure and function of the DUF2233 domain in bacteria and in the human mannose 6-phosphate uncovering enzyme. J Biol Chem. Apr 9. [Epub ahead of print] PMID: 23572527

Deka RK, Brautigam CA, Liu WZ, Tomchick DR, Norgard MV. (2013) The TP0796 lipoprotein of Treponema pallidum is a bimetal-dependent FAD pyrophosphatase with a potential role in flavin homeostasis. J Biol Chem. Feb 27. [Epub ahead of print] PMID: 23447540

Durmaz E, Kuyucak S, Sezerman UO. (2013) Modifying the catalytic preference of tributyrin in Bacillus thermocatenulatus lipase through in-silico modeling of enzyme-substrate complex.  Protein Eng Des Sel. Feb 18. [Epub ahead of print] PMID: 23424251

Jarecki BW, Makino S, Beebe ET, Fox BG, Chanda B. (2013) Function of Shaker potassium channels produced by cell-free translation upon injection into Xenopus oocytes. Sci Rep.;3:1040. doi: 10.1038/srep01040. Epub 2013 Jan 8. PMID: 23301161

Schaefer SA, Dong M, Rubenstein RP, Wilkie WA, Bahnson BJ, Thorpe C, Rozovsky S. (2013) (77)Se enrichment of proteins expands the biological NMR toolbox. J Mol Biol. Jan 23;425(2):222-31. doi: 10.1016/j.jmb.2012.11.011. Epub 2012 Nov 15. PMID: 23159557

Dutoit R, Brandt N, Legrain C, Bauvois C. (2013) Functional characterization of two M42 aminopeptidases erroneously annotated as cellulases. PLoS One 7(11):e50639. doi: 10.1371/journal.pone.0050639. Epub 2012 Nov 30. PMID: 23226342

Hedge MK, Gehring AM, Adkins CT, Weston LA, Lavis LD, Johnson RJ. (2012) The structural basis for the narrow substrate specificity of an acetyl esterase from Thermotoga maritima. Biochim Biophys Acta Sep;1824(9):1024-30. doi: 10.1016/j.bbapap.2012.05.009. Epub 2012 Jun 1. PMID: 22659119

Mishra S, Bhagavat R, Chandra N, Vijayarangan N, Rajeswari H, Ajitkumar P. (2012) Cloning, expression, purification, and biochemical characterisation of the FIC motif containing protein of Mycobacterium tuberculosis. Protein Expr Purif. Nov;86(1):58-67. doi: 10.1016/j.pep.2012.08.020. Epub 2012 Sep 13. PMID: 22982230

Fang H, Caranto JD, Mendoza R, Taylor AB, Hart PJ, Kurtz DM Jr. (2012) Histidine ligand variants of a flavo-diiron protein: effects on structure and activities. J Biol Inorg Chem. Sep 19. [Epub ahead of print] PMID: 22990880

 J, Srinivasan P, Pham DN, and Rozovsky S. (2012) Expression and purification of the membrane enzyme selenoprotein K.  Protein Expr Purif. Nov;86(1):27-34. doi: 10.1016/j.pep.2012.08.014. Epub 2012 Aug 31. PMID: 22963794

Steere AN, Roberts SE, Byrne SL, Dennis Chasteen N, Bobst CE, Kaltashov IA, Smith VC, MacGillivray RT, Mason AB. (2010) Properties of a homogeneous C-lobe prepared by introduction of a TEV cleavage site between the lobes of human transferrin. Protein Expr Purif. Jul;72(1):32-41. doi: 10.1016/j.pep.2010.01.008. Epub 2010 Jan 11. PMID: 20064616

Wang L, Huang H, Nguyen HH, Allen KN, Mariano PS, Dunaway-Mariano D. (2010) Divergence of biochemical function in the HAD superfamily: D-glycero-D-manno-heptose-1,7-bisphosphate phosphatase (GmhB). Biochemistry. Feb 16;49(6):1072-81. doi: 10.1021/bi902018y. PMID: 20050615

Hillmann F, Riebe O, Fischer RJ, Mot A, Caranto JD, Kurtz DM Jr, Bahl H. (2009) Reductive dioxygen scavenging by flavo-diiron proteins of Clostridium acetobutylicum.  FEBS Lett. Jan 5;583(1):241-5. doi: 10.1016/j.febslet.2008.12.004. Epub 2008 Dec 11. PMID: 19084524

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Publications citing plasmids deposited to DNASU or the PSI:Biology-MR

Qingping Xu2, Dominique Mengin-Lecreulx , Delphine Patin4, Joanna C. Grant5, Hsiu-Ju Chiu, Lukasz Jaroszewski, Mark W. Knuth5, Adam Godzik7, Scott A. Lesley8, Marc-André Elsliger, Ashley M. Deacon, Ian A. Wilson. (2014) Structure-Guided Functional Characterization of DUF1460 Reveals a Highly Specific NlpC/P60 Amidase Family. Dec 2;22(12):1799-809. doi: 10.1016/j.str.2014.09.018. Epub 2014 Nov 20. PMID: 25465128

Troy G. Hammerstrom, Lori B. Horton, Michelle C. Swick, Andrzej Joachimiak, Jerzy Osipiuk and Theresa M. Koehler (2014) Crystal structure of Bacillus anthracis virulence regulator AtxA and effects of phosphorylated histidines on multimerization and activity. DOI: 10.1111/mmi.12867 PMID: 25402841

Fabio Parmeggiani, Po-Ssu Huang, Sergey Vorobiev, Rong Xiao, Keunwan Park, Silvia Caprari, Min Su, Seetharaman Jayaraman, Lei Mao, Haleema Janjua, Gaetano T. Montelione, John Hunt, David Baker. (2014) A general computational approach for repeat protein design. J Mol Biol. 2014 Nov 14. pii: S0022-2836(14)00582-8. doi: 10.1016/j.jmb.2014.11.005. [Epub ahead of print] PMID: 25451037

Nilsson CL, Mostovenko E, Lichti CF, Ruggles K, Fenyo D, Rosenbloom KR, Hancock WS, Paik YK, Omenn GS, LaBaer J, Kroes RA, Uhlén M, Hober S, Vegvari A, Andrén PE, Sulman EP, Lang FF, Fuentes M, Carlsohn E, Emmett MR, Moskal JR, Berven FS, Fehniger TE, Marko-Varga G. (2014) Use of ENCODE Resources to Characterize Novel Proteoforms and Missing Proteins in the Human Proteome. J Proteome Res. 2014 Nov 4. [Epub ahead of print]  PMID: 25369122

* Elshahawi SI, Ramelot TA, Seetharaman J, Chen J, Singh S, Yang Y, Pederson K, Kharel MK, Xiao R, Lew S, Yennamalli RM, Miller MD, Wang F, Tong L, Montelione GT, Kennedy MA, Bingman CA, Zhu H, Phillips GN, Thorson JS. (2014) Structure-guided functional characterization of enediyne self-sacrifice resistance proteins CalU16 and CalU19. ACS Chem Biol. 2014 Jul 31. [Epub ahead of print] PMID: 25079510

* Korczynska M, Xiang DF, Zhang Z, Xu C, Narindoshvili T, Kamat SS, Williams HJ, Chang SS, Kolb P, Hillerich B, Sauder JM, Burley SK, Almo SC, Swaminathan S, Shoichet BK, Raushel FM. (2014) Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate. Biochemistry. 2014 Jul 22;53(28):4727-38. doi: 10.1021/bi500595c. Epub 2014 Jul 9. PMID: 24955762

* Eletsky A, Michalska K, Houliston S, Zhang Q, Daily MD, Xu X, Cui H, Yee A, Lemak A, Wu B, Garcia M, Burnet MC4, Meyer KM, Aryal UK, Sanchez O, Ansong C, Xiao R, Acton TB, Adkins JN, Montelione GT, Joachimiak A, Arrowsmith CH, Savchenko A, Szyperski T, Cort JR. (2014) Structural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO. PLoS One. 2014 Jul 10;9(7):e101787. doi: 10.1371/journal.pone.0101787. eCollection 2014. PMID: 25010333

*Pulavarti SV, Huang YJ, Pederson K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Szyperski T. (2014) Solution NMR structures of immunoglobulin-like domains 7 and 12 from obscurin-like protein 1 contribute to the structural coverage of the human cancer protein interaction network. J Struct Funct Genomics. 2014 Jul 3. [Epub ahead of print] PMID: 24989974

* Xu X, Pulavarti SV, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. (2014) Solution NMR structures of homeodomains from human proteins ALX4, ZHX1, and CASP8AP2 contribute to the structural coverage of the Human Cancer Protein Interaction Network. J Struct Funct Genomics. 2014 Jun 19. [Epub ahead of print] PMID: 24941917

*Li J, Zhuo M, Pei L, Rajagopal M, Yu AS. (2014) Comprehensive cysteine-scanning mutagenesis reveals Claudin-2 pore-lining residues with different intrapore locations. J Biol Chem. Mar 7;289(10):6475-84. doi: 10.1074/jbc.M113.536888. Epub 2014 Jan 16. PMID: 24436330
Plasmids from TJMP

*Pulavarti SV1, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. (2014) Polypeptide backbone, Cβ and methyl group resonance assignments of the 24 kDa plectin repeat domain 6 from human protein plectin. Biomol NMR Assign. 2014 Apr 11. [Epub ahead of print] PMID: 24722902

*Rajagopalan S, Wang 2, Yu K, Kuzin AP, Richter F, Lew S, Miklos AE, Matthews ML, Seetharaman J, Su M, Hunt JF, Cravatt BF, Baker D. (2014) Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat Chem Biol. 2014 Apr 6. doi: 10.1038/nchembio.1498. [Epub ahead of print] PMID: 24705591

*Makowska-Grzyska, Magdalena, et al. "Protein Production for Structural Genomics Using E. coli Expression." Methods in molecular biology (Clifton, NJ) 1140 (2014): 89. PMID: 24590711

Makino S, Beebe ET, Markley JL, Fox BG. (2014) Cell-free protein synthesis for functional and structural studies. Methods Mol Biol. 1091:161-78. doi: 10.1007/978-1-62703-691-7_11. PMID: 24203331

Renato Bruni and Brian Kloss (2013) High-Throughput Cloning and Expression of Integral Membrane Proteins in Escherichia coli. Current Protocls in Protein Science. Nov 5; Unit 29.6, DOI: 10.1002/0471140864.ps2906s74 PMID: 24510647

Nicole Monroe, Han Han, Malgorzata D. Gonciarz, Debra M. Eckert, Mary Anne Karren, Frank G. Whitby, Wesley I. Sundquist, Christopher P. Hill, The oligomeric state of the active Vps4 AAA ATPase, Journal of Molecular Biology, Available online 23 October 2013, ISSN 0022-2836, PMID: 24161953

* Netra Joshi, Eric K. Hoobler, Steven Perry, Giovanni Diaz, Brian Grant Fox, and Theodore Russell Holman. (2013). Kinetic and Structural Investigations into the allosteric and pH effect on Substrate Specificity of Human Epithelial 15-Lipoxygenase-2. Biochemistry  

*Das D, Hervé M, Elsliger MA, Kadam RU, Grant J, Chiu HJ, Knuth MW, Klock HE, Miller MD, Godzik A, Lesley SA, Deacon AM, Mengin-Lecreulx D, Wilson IA. (2013) Structure and function of a novel LD-carboxypeptidase A involved in peptidoglycan recycling. J Bacteriol. Oct 11. [Epub ahead of print] PMID: 24123814

*Odokonyero D, Ragumani S, Swaminathan S, Lopez MS, Bonanno JB, Ozerova ND, Woodard DR, Machala BW, Burley SK, Almo SC, Glasner ME. Divergent Evolution of Ligand Binding in the o-Succinylbenzoate Synthase Family. (2013) Biochemistry. Sep 24. [Epub ahead of print] PMID: 24060347

*Eschenfeldt WH, Makowska-Grzyska M, Stols L, Donnelly MI, Jedrzejczak R, Joachimiak A. (2013) New LIC vectors for production of proteins from genes containing rare codons. J Struct Funct Genomics. 2013 Sep 22. [Epub ahead of print] PMID: 24057978

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*Zhang Y, Thiele I, Weekes D, Li Z, Jaroszewski L, Ginalski K, Deacon AM, Wooley J, Lesley SA, Wilson IA, Palsson B, Osterman A, Godzik A. (2009) Three-dimensional structural view of the central metabolic network of Thermotoga maritima. Science. Sep 18;325(5947):1544-9. doi: 10.1126/science.1174671. PMID: 19762644

*Bitto E, Bingman CA, Bittova L, Frederick RO, Fox BG, Phillips GN Jr. (2009) X-ray structure of Danio rerio secretagogin: A hexa-EF-hand calcium sensor. Proteins. 2009 Aug 1;76(2):477-83. doi: 10.1002/prot.22362. PMID: 19241471

*Berman HM, Westbrook JD, Gabanyi MJ, Tao W, Shah R, Kouranov A, Schwede T, Arnold K, Kiefer F, Bordoli L, Kopp J, Podvinec M, Adams PD, Carter LG, Minor W, Nair R, La Baer J. (2009)  The protein structure initiative structural genomics knowledgebase. Nucleic Acids Res. Jan;37(Database issue):D365-8. Epub 2008 Nov 14.

*Xu Q, McMullan D, Abdubek P, Astakhova T, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Elsliger MA, Feuerhelm J, Hale J, Han GW, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Sri Krishna S, Kumar A, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Trame C, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2009) A structural basis for the regulatory inactivation of DnaA. J Mol Biol. Jan 16;385(2):368-80. doi: 10.1016/j.jmb.2008.10.059. Epub 2008 Oct 30. PMID: 19000695

*Jaakola VP, Griffith MT, Hanson MA, Cherezov V, Chien EY, Lane JR, Ijzerman AP, Stevens RC. (2008) The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.Science. Nov 21;322(5905):1211-7. doi: 10.1126/science.1164772. Epub 2008 Oct 2. PMID: 18832607

*Bitto E, Bingman CA, Bittova L, Kondrashov DA, Bannen RM, Fox BG, Markley JL, Phillips GN Jr. (2008) Structure of human J-type co-chaperone HscB reveals a tetracysteine metal-binding domain. J Biol Chem. Oct 31;283(44):30184-92. doi: 10.1074/jbc.M804746200. Epub 2008 Aug 19. PMID: 18713742
Tyagi R, Eswaramoorthy S, Burley SK, Raushel FM, Swaminathan S. (2008) A common catalytic mechanism for proteins of the HutI family. Biochemistry. May 20;47(20):5608-15. doi: 10.1021/bi800180g. Epub 2008 Apr 29. PMID: 18442260

*Madegowda M, Eswaramoorthy S, Burley SK, Swaminathan S. (2008) X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus. Proteins. May 1;71(2):534-40. doi: 10.1002/prot.21888. PMID: 18175317

* Hayes PL, Lytle BL, Volkman BF, Peterson FC. (2008) The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominantly unstructured protein. Protein Sci. Mar;17(3):571-6. doi: 10.1110/ps.073290408. PMID: 18287285

*Cherezov V, Rosenbaum DM, Hanson MA, Rasmussen SG, Thian FS, Kobilka TS, Choi HJ, Kuhn P, Weis WI, Kobilka BK, Stevens RC. (2007) High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor. Science. Nov 23;318(5854):1258-65. Epub 2007 Oct 25. PMID: 17962520

*Tyagi R, Kumaran D, Burley SK, Swaminathan S. (2007) X-ray structure of imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution. Proteins. Nov 15;69(3):652-8. PMID: 17640072

*Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK. (2007) Structural genomics of protein phosphatases. J Struct Funct Genomics. Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID: 18058037

*Bitto E, Bingman CA, Wesenberg GE, McCoy JG, Phillips GN Jr. (2007) Structure of aspartoacylase, the brain enzyme impaired in Canavan disease. Proc Natl Acad Sci U S A. Jan 9;104(2):456-61. Epub 2006 Dec 28. PMID: 17194761

*Schwarzenbacher R, McMullan D, Krishna SS, Xu Q, Miller MD, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, McPhillips TM, Morse AT, Quijano K, Spraggon G, Stevens RC, van den Bedem H, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2006) Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 A resolution reveals a new fold. Proteins. Oct 1;65(1):243-8. PMID: 16865707

*Shen N, Guo L, Yang B, Jin Y, Ding J. (2006) Structure of human tryptophanyl-tRNA synthetase in complex with tRNATrp reveals the molecular basis of tRNA recognition and specificity. Nucleic Acids Res. Jun 23;34(11):3246-58. Print 2006. PMID: 16798914

*Yang Z, Savchenko A, Yakunin A, Zhang R, Edwards A, Arrowsmith C, Tong L. (2003) Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643. J Biol Chem. Mar 7;278(10):8804-8. Epub 2002 Dec 21. PMID: 12496312

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Publications citing or mentioning DNASU or the PSI:Biology-MR (does not include reviews or editorials)

* indicates publication from a PSI center

* Berman, H. M., Gabanyi, M. J., Groom, C. R., Johnson, J. E., Murshudov, G. N., Nicholls, R. A., Reddy, V., Schwede, T., Zimmerman, M. D., Westbrook, J. & Minor, W. (2015). Data to knowledge: how to get meaning from your result. IUCrJ 2. Volume 2 Part 1 doi:10.1107/S2052252514023306

Kamens J. (2014) Addgene: making materials sharing "science as usual". PLoS Biol. 2014 Nov 11;12(11):e1001991. doi: 10.1371/journal.pbio.1001991. eCollection 2014. PMID: 25387006

Kamens J. (2014) The Addgene repository: an international nonprofit plasmid and data resource. Nucleic Acids Res. 2014 Nov 11. pii: gku893. [Epub ahead of print]  PMID: 25392412

Lourido, L., Diez, P., Dasilva, N., Gonzalez-Gonzalez, M., Ruiz-Romero, C., Blanco, F., Orfao, A., LaBaer, J. and Fuentes, M. (2014) In Marko-Varga, G. (ed.), Genomics and Proteomics for Clinical Discovery and Development. Springer Netherlands, Vol. 6, pp. 147-173.

Marx V. (2014) Plasmids: shopping in the age of plenty. Nat Methods. 2014 Jul 30;11(8):795-798. doi: 10.1038/nmeth.3034.
PMID: 25075905

Mohr SE, Hu Y, Kim K, Housden BE, Perrimon N. (2014) Resources for Functional Genomics Studies in Drosophila melanogaster. Genetics. 2014 Mar 20. [Epub ahead of print] PMID: 24653003

Khafizov K1, Madrid-Aliste C, Almo SC, Fiser A. (2014) Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative. Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3733-8. doi: 10.1073/pnas.1321614111. Epub 2014 Feb 24. PMID: 24567391

Zimmerman, Matthew D., et al. "Data management in the modern structural biology and biomedical research environment." Methods in molecular biology (Clifton, NJ) 1140 (2014): 1. PMID: 24590705

Elkins, Jonathan M. "Case Study—Structural Genomics and Human Protein Kinases." Methods in molecular biology (Clifton, NJ) 1140 (2014): 325. PMID: 24590728

Khafizov K, Madrid-Aliste C, Almo SC, Fiser A. (2014)  Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative. Proc Natl Acad Sci U S A. 2014 Feb 24. [Epub ahead of print] PMID: 24567391

*Taichi E. Takasuka, Johnnie A. Walker, Lai F. Bergeman, Kirk A. Vander Meulen, Shin-ichi Makino, Nathaniel L. Elsen, Brian G. Fox (2014) Cell-Free Translation of Biofuel Enzymes.  Methods in Molecular Biology Volume 1118, 2014, pp 71-95. PMID: 24395410

* Pieper U, Webb BM, Dong GQ, Schneidman-Duhovny D, Fan H, Kim SJ, Khuri N, Spill YG, Weinkam P, Hammel M, Tainer JA, Nilges M, Sali A. (2014) ModBase, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. Jan 1;42(1):D336-46. doi: 10.1093/nar/gkt1144. Epub 2013 Nov 23. PMID: 24271400

* Depietro PJ, Julfayev ES, McLaughlin WA. (2013) Quantification of the impact of PSI:Biology according to the annotations of the determined structures. BMC Struct Biol. Oct 21;13(1):24. [Epub ahead of print] PMID: 24139526

Geiling B, Vandal G, Posner AR, de Bruyns A, Dutchak KL, et al. (2013) A Modular Lentiviral and Retroviral Construction System to Rapidly Generate Vectors for Gene Expression and Gene Knockdown In Vitro and In Vivo. PLoS ONE 8(10): e76279. doi:10.1371/journal.pone.0076279 PMID: 24146852

Wolfson, W. (2013) Addgene: the bank that gives points for (plasmid) deposits. Chem Biol. Jul 25;20(7):857-8. doi: 10.1016/j.chembiol.2013.07.002. PMID: 23890002

Lee JR, Magee DM, Gaster RS, LaBaer J, Wang SX. (2013) Expert Rev Proteomics. Feb;10(1):65-75. doi: 10.1586/epr.12.67.  PMID: 23414360

Kahl LJ, and Endy D. (2013) A survey of enabling technologies in synthetic biology. J Biol Eng. May 10;7(1):13. [Epub ahead of print] PMID: 23663447

Im H, Snyder M. (2013) Preparation of recombinant protein spotted arrays for proteome-wide identification of kinase targets. Curr Protoc Protein Sci. Apr;Chapter 27:Unit27.4. doi: 10.1002/0471140864.ps2704s72. PMID: 23546622

Festa F, Steel J, Bian X, Labaer J. (2013) High-throughput cloning and expression library creation for functional proteomics. Proteomics. Mar 4. doi: 10.1002/pmic.201200456. [Epub ahead of print] PMID: 23457047

Wilson ML, Cai Y, Hanlon R, Taylor S, Chevreux B, Setubal JC, Tyler BM, Peccoud J. (2013) Sequence verification of synthetic DNA by assembly of sequencing reads. Nucleic Acids Res. Jan 7;41(1):e25. doi: 10.1093/nar/gks908. Epub 2012 Oct 4. PMID: 23042248

Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ. (2013) Spanish human proteome project: dissection of chromosome 16. J Proteome Res. Jan 4;12(1):112-22. doi: 10.1021/pr300898u. Epub 2012 Dec 12. PMID: 23234512

Nilsson CL, Berven F, Selheim F, Liu H, Moskal JR, Kroes RA, Sulman EP, Conrad CA, Lang FF, Andrén PE, Nilsson A, Carlsohn E, Lilja H, Malm J, Fenyö D, Subramaniyam D, Wang X, Gonzales-Gonzales M, Dasilva N, Diez P, Fuentes M, Végvári Á, Sjödin K, Welinder C, Laurell T, Fehniger TE, Lindberg H, Rezeli M, Edula G, Hober S, Marko-Varga G. (2013) Chromosome 19 annotations with disease speciation: a first report from the Global Research Consortium.  J Proteome Res. Jan 4;12(1):135-50. doi: 10.1021/pr3008607. Epub 2012 Dec 18. PMID: 23249167

Linshiz G, Goldberg A, Konry T, Hillson NJ. (2012) The fusion of biology, computer science, and engineering: towards efficient and successful synthetic biology. Perspect Biol Med. 2012;55(4):503-20. doi: 10.1353/pbm.2012.0044. PMID: 23502561

Ham TS, Dmytriv Z, Plahar H, Chen J, Hillson NJ, Keasling JD. (2012) Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools. Nucleic Acids Res. Oct;40(18):e141. doi: 10.1093/nar/gks531. Epub 2012 Jun 19. PMID: 22718978

Takulapalli BR, Qiu J, Magee DM, Kahn P, Brunner A, Barker K, Means S, Miersch S, Bian X, Mendoza A, Festa F, Syal K, Park JG, LaBaer J, Wiktor P. (2012) High density diffusion-free nanowell arrays. J Proteome Res. Aug 3;11(8):4382-91. Epub 2012 Jul 13. PMID: 22742968

Miersch S, Sidhu SS. (2012) Synthetic antibodies: Concepts, potential and practical considerations. Methods.  Aug;57(4):486-98. doi: 10.1016/j.ymeth.2012.06.012. Epub 2012 Jun 27. PMID: 22750306

*Gifford LK, Carter LG, Gabanyi MJ, Berman HM, Adams PD. (2012) The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource. J Struct Funct Genomics. Jun;13(2):57-62. doi: 10.1007/s10969-012-9133-7. Epub 2012 Apr 6. PMID: 22527514

Bray JE. (2012) Target selection for structural genomics based on combining fold recognition and crystallisation prediction methods: application to the human proteome. J Struct Funct Genomics.
Mar;13(1):37-46. Epub 2012 Feb 22. PMID: 22354707

Durani V, Sullivan BJ, Magliery TJ. (2012) Simplifying protein expression with ligation-free, traceless and tag-switching plasmids. Protein Expr Purif. Sep;85(1):9-17. doi: 10.1016/j.pep.2012.06.007. Epub 2012 Jun 21. PMID: 22728767

Waugh DS (2011). An overview of enzymatic reagents for the removal of affinity tags. Protein Expr Purif. 2011 Dec;80(2):283-93. doi: 10.1016/j.pep.2011.08.005. Epub 2011 Aug 19. PMID: 21871965

Nicolini C, Sivozhelezov  V , Bavastrello  V, Bezzerra T , Scudieri D, Spera R and Pechkova E. (2011) Matrices for Sensors from Inorganic, Organic, and Biological Nanocomposites. Materials  4(8), 1483-1518; doi:10.3390/ma4081483

Qiu J, LaBaer J. (2011) Nucleic acid programmable protein array a just-in-time multiplexed protein expression and purification platform.  Methods Enzymol. 500:151-63. doi: 10.1016/B978-0-12-385118-5.00009-8.PMID: 21943897

*Gabanyi MJ, Adams PD, Arnold K, Bordoli L, Carter LG, Flippen-Andersen J, Gifford L, Haas J, Kouranov A, McLaughlin WA, Micallef DI, Minor W, Shah R, Schwede T, Tao YP, Westbrook JD, Zimmerman M, Berman HM. (2011) The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. J Struct Funct Genomics. Jul;12(2):45-54. doi: 10.1007/s10969-011-9106-2. Epub 2011 Apr 7. PMID: 21472436

Miersch S, LaBaer J. (2011) Nucleic Acid programmable protein arrays: versatile tools for array-based functional protein studies. Curr Protoc Protein Sci. Apr; Chapter 27:Unit27.2.PMID: 21488044

Matarraz S, González-González M, Jara M, Orfao A, Fuentes M. (2011) New technologies in cancer. Protein microarrays for biomarker discovery. Clin Transl Oncol. Mar;13(3):156-61.PMID: 21421460

Anderson KS, Sibani S, Wallstrom G, Qiu J, Mendoza EA, Raphael J, Hainsworth E, Montor WR, Wong J, Park JG, Lokko N, Logvinenko T, Ramachandran N, Godwin AK, Marks J, Engstrom P, Labaer J. (2011) Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer. J Proteome Res.  Jan 7;10(1):85-96. Epub 2010 Nov 23.

*Grabowski M, Chruszcz M, Zimmerman MD, Kirillova O, Minor W. (2009) Benefits of structural genomics for drug discovery research. Infect Disord Drug Targets. Nov;9(5):459-74.PMID: 20977275

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