Patents, publications, theses, and dissertations referencing DNASU. Please click the links below to go directly to a category of interest.
- Publications written by DNASU - please cite our most recent publication if you use a plasmid from DNASU in a publication
- Patents referencing DNASU
- Publications referencing DNASU products and services
- Theses and Dissertations using specific plasmids from DNASU
Publications written by DNASU and the PSI:Biology-Materials Repository
PMID: 24225319
Seiler, C. Y., Park, J. G., Sharma, A., Hunter, P., Surapaneni, P., Sedillo, C., Field, J., Algar, R., Price, A., Steel, J., Throop, A., Fiacco, M., & LaBaer, J. (2013). DNASU plasmid and PSI:Biology-Materials repositories: resources to accelerate biological research. Nucleic acids research, 42(Database issue), D1253-D1260. https://doi.org/10.1093/nar/gkt1060
PMID: 21360289
Cormier, C. Y., Park, J. G., Fiacco, M., Steel, J., Hunter, P., Kramer, J., Singla, R., & LaBaer, J. (2011). PSI:Biology-materials repository: a biologist's resource for protein expression plasmids. Journal of structural and functional genomics, 12(2), 55-62. https://doi.org/10.1007/s10969-011-9100-8
PMID: 19906724
Cormier, C. Y., Mohr, S. E., Zuo, D., Hu, Y., Rolfs, A., Kramer, J., Taycher, E., Kelley, F., Fiacco, M., Turnbull, G., & LaBaer, J. (2010). Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community. Nucleic acids research, 38(Database issue), D743-D749. https://doi.org/10.1093/nar/gkp999
Patents referencing DNASU
United States Patent Application 11567088 B2
Labaer, Joshua (Chandler, AZ, US), Qiu, Ji (Chandler, AZ, US), Bian, Xiaofang (Mesa, AZ, US), Schatz, Desmond A. (Gainesville, FL, US), Wasserfall, Clive H. (Gainesville, FL, US), Atkinson, Mark A. (Gainesville, FL, US), January 31, 2023
Methods for diagnosis of type 1 diabetes
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US), UNIVERSITY OF FLORIDA RESEARCH FOUNDATION INC. (Gainesville, FL, US)
United States Patent Application 11543407 B2
Smith, Joseph (Tempe, AZ, US), Blain Christen, Jennifer (Chandler, AZ, US), Anderson, Karen (Scottsdale, AZ, US), Katchman, Benjamin (Tempe, AZ, US), January 3, 2023
Flexible optical biosensor for point of use multi-pathogen detection
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US)
United States Patent Application 11525831 B2
Labaer, Joshua (Chandler, AZ, US), Wang, Jie (Glendale, AZ, US), Qui, Ji (Chandler, AZ, US), Wallstrom, Garrick (Mesa, AZ, US), Anderson, Karen (Scottsdale, AZ, US), Park, Jin (Phoenix, AZ, US), Figueroa, Jonine (Edinburgh, GB), December 13, 2022
Plasma autoantibody biomarkers for basal like breast cancer
Arizona Board of Regents on behalf of Arizona State University (Scottsdale, AZ, US)
United States Patent Application 20220387621
Leblanc, Roger (Miami, FL, US), Schatz, Jonathan (Miami, FL, US), Liyanage, Piumi (Miami, FL, US), Arumov, Artavazd (Miami, FL, US), December 8, 2022
TARGETED DELIVERY OF NANOCARRIER-CONJUGATED DOXORUBICIN
University Of Miami (Miami, FL, US)
United States Patent Application 11519007 B2
Kong, Wei (Phoenix, AZ, US) 2022
Tumor-navigating, self-eradicating, trail-armed salmonella for precision cancer therapy, December 6, 2022
Arizona Board of Regents on behalf of Arizona State University (Scottsdale, AZ, US)
United States Patent Application 20220380407
Janetka, James W. (St. Louis, MO, US), Damalanka, Vishnu (St. Louis, MO, US), December 1, 2022
COMPOUNDS AND METHODS FOR TREATING CANCER, VIRAL INFECTIONS, AND ALLERGIC CONDITIONS
Washington University (St. Louis, MO, US)
United States Patent Application 20220373548
Labaer, Joshua (Chandler, AZ, US), Song, Lusheng (Tempe, AZ, US), Qiu, Ji (Chandler, AZ, US), Chung, Yunro (Chandler, AZ, US), November 24, 2022
NOVEL ANTIBODIES FOR DETECTING EPSTEIN BARR VIRUS-POSITIVE GASTRIC CANCER
Arizona Board of Regents on behalf of Arizona State University (Scottsdale, AZ, US)
United States Patent Application 20220251544
Johnston, Stephen Albert (Tempe, AZ, US), Shen, Luhui (Tempe, AZ, US), August 11, 2022
METHODS AND COMPOSITIONS FOR IDENTIFYING NEOANTIGENS FOR USE IN TREATING AND PREVENTING CANCER
Arizona Board of Regents on Behalf of Arizona State University (Scottsdale, AZ, US)
United States Patent Application 11407792
Silberg, Jonathan (Houston, TX, US), Atkinson, Joshua T. (Houston, TX, US), Campbell, Ian J. (Houston, TX, US), Bennett, George N. (Houston, TX, US), August 9, 2022
Regulating electron flow using fragmented proteins
WILLIAM MARSH RICE UNIVERSITY (Houston, TX, US)
United States Patent Application 20220233535
Yi, Chunling (Washington, DC, US), White, Shannon M. (Arlington, VA, US), Field, Jeffrey (Philadelphia, PA, US), July 28, 2022
USE OF INHIBITORS OF YAP/TAZ FOR THE TREATMENT OF CANCER
Georgetown University (Washington, DC, US)
United States Patent Application 20220218753
Zhu, Fangfang (Emeryville, CA, US), Weissman, Irving L. (Stanford, CA, US), July 14, 2022
GABA AGONISTS AND ANTAGONISTS AFFECT DIFFERENTIATION OF HEMATOPOIETIC STEM CELLS AND MEGAKARYOCYTE PROGENITORS
The Board of Trustees of the Leland Stanford Junior University (Stanford, CA, US)
United States Patent Application 20220127611
Yeo, Eugene (La Jolla, CA, US), Luo, En-ching (La Jolla, CA, US), Published April 28, 2022
METHODS OF MODULATING RNA TRANSLATION
The Regents of the University of California (La Jolla, CA, US)
United States Patent Application 20220089695
Wang, Jun (New York, NY, US), Lu, Qiao (New York, NY, US), Liu, Jia (New York, NY, US), Huang, Chao Bai (San Leandro, CA, US), Dong, Jianbo (Santa Clara, CA, US), Liu, Yue (Foster City, CA, US), Published March 24, 2022
Targeting SARS-CoV-2 Viral-immune Interaction for COVID-19 Therapy
NEW YORK UNIVERSITY (New York, NY, US), AB STUDIO INC. (Hayward, CA, US)
United States Patent Application 11261223 B2
Lengyel, Ernst (Chicago, IL, US), Mann, Matthias (Munich, DE), Curtis, Marion (Chicago, IL, US), Coscia, Fabian (Munich, DE), Published March 1, 2022
Methods of treating cancers with CT45 targeted therapies
The University of Chicago (Chicago, IL, US) ,Max-Planck-Gesellschaft Zur Forderung Der Wissenschaften E.V. (Munich, DE)
United States Patent Application 20220056535
Hendricks, William (Phoenix, AZ, US), Murtaza, Muhammed (Phoenix, AZ, US), Lorch, Gwendolen (Columbus, OH, US), Published February 24, 2022
IDENTIFICATION OF HER2 MUTATIONS IN LUNG CANCER AND METHODS OF TREATMENT
THE TRANSLATIONAL GENOMICS RESEARCH INSTITUTE (Phoenix, AZ, US), OHIO STATE UNIVERSITY (Columbus, OH, US)
United States Patent Application 20220049315
O'connor, Caitlin (Ann Arbor, MI, US), Narla, Goutham (Ann Arbor, MI, US), Published February 17, 2022
COMPOSITIONS AND METHODS FOR DETECTING AND TREATING HIGH GRADE SUBTYPES OF UTERINE CANCER
The Regents of the University of Michigan (Ann Arbor, MI, US)
United States Patent Application 11249071
Guttman, Mitchell (Los Angeles, CA, US), Chen, Chun-kan (Alhambra, CA, US), Mchugh, Colleen A. (Altadena, CA, US), Published February 15, 2022
Reactivation of X chromosome genes
CALIFORNIA INSTITUTE OF TECHNOLOGY (Pasadena, CA, US)
United States Patent Application 20220042982
Labaer, Joshua (Chandler, AZ, US), Petritis, Brianne (Peachtree Corners, GA, US), Published February 10, 2022
ADAPTATION OF NAPPA FOR SURFACE PLASMON RESONANCE IMAGING ANALYSES
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AR, US)
United States Patent Application 20220042046
Kong, Wei (Phoenix, AZ, US), Published February 10, 2022
TUMOR-NAVIGATING, SELF-ERADICATING, TRAIL-ARMED SALMONELLA FOR PRECISION CANCER THERAPY
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US)
United States Patent Application 20210389303
Brafman, David (Phoenix, AZ, US), Wang, Xiao (Chandler, AZ, US), Brookhouser, Nicholas (Tempe, AZ, US), Tekel, Stefan (Tempe, AZ, US), Standage-beier, Kylie (Phoenix, AZ, US), Published December 16, 2021
TRANSIENT REPORTERS AND METHODS FOR BASE EDITING ENRICHMENT
United States Patent Application 20210363588
Hai, Yan (Duham, NC, US), Diplas, Bill (Durham, NC, US), Published November 25, 2021
Addressing Treatments for Glioblastoma
Duke University (Durham, NC, US)
United States Patent Application 20210267939
Newgard, Christopher B. (Durham, NC, US), White, Phillip (Durham, NC, US), Grenier-larouche, Thomas (Durham, NC, US), Published September 2, 2021
COMPOSITIONS AND METHODS FOR TREATING NAFLD/NASH AND RELATED DISEASE PHENOTYPES
Duke University (Durham, NC, US)
United States Patent Application 20210228499
Ji, Ru-rong (Durham, NC, US), Bang, Sangsu (Durham, NC, US), Xu, Zhen-zhong (Durham, NC, US), Published July 29, 2021
COMPOSITIONS AND METHODS FOR TREATING PAIN, INFLAMMATION, INFECTION, MALARIA, AND SEPSIS
Duke University (Durham, NC, US)
United States Patent Application 20210206814
Chang, Xiu-bao (Scottsdale, AZ, US), Published July 8, 2021
METHODS AND MATERIALS FOR GENE EDITING
Mayo Foundation for Medical Education and Research (Rochester, MN, US)
United States Patent Application 20210147481
Holub, Justin M. (Athens, OH, US), Colvin, Robert A. (Athens, OH, US), Published May 20, 2021
PEPTIDE-BASED INHIBITORS OF MARK FAMILY PROTEINS
Ohio Universtiy (Athens, OH, US)
United States Patent Application 20210106586
Sedivy, John M. (Barrington, RI, US), De Cecco, Marco (Pawtucket, RI, US), Published April 15, 2021
COMPOSITIONS AND METHODS FOR TREATING, PREVENTING OR REVERSING AGE ASSOCIATED INFLAMMATION AND DISORDERS
Brown University (Providence, RI, US)
United States Patent Application 20210101924
Tor, Yitzhak (San Diego, CA, US), Li, Yao (San Diego, CA, US), Fin, Andrea (San Diego, CA, US), Published April 8, 2021
CYCLIC DINUCLEOTIDE COMPOUNDS AS STING AGONISTS
The Regents of the University of California (Oakland, CA, US)
United States Patent Application 20210069295
Deretic, Vojo P. (Placitas, NM, US), Jia, Jingyue (Albuquerque, NM, US), Published March 11, 2021
GALECTINS CONTROL MTOR IN RESPONSE TO ENDOMEMBRANE DAMAGE AND PROVIDE A MECHANISM AND TARGET FOR THE TREATMENT OF AUTOPHAGY-RELATED DISEASES
STC. UNM (Albuquerque, NM, US)
United States Patent Application 20210008225
Vogel, Kara Rain (Madison, WI, US), Gibson, Kenneth Michael (Spokane, WA, US), Ainslie, Garrett Robert (Burlingame, CA, US), Published January 14, 2021
COMPOSITIONS AND METHODS FOR TREATING SUCCINIC SEMIALDEHYDE DEHYDROGENASE DEFICIENCY (SSADHD)
WASHINGTON STATE UNIVERSITY (Pullman, WA, US)
United States Patent Application 20210003580
Bishop, Alexander James (Houston, TX, US), Gorthi, Aparna (Houston, TX, US), Romero, July Carolina (Houston, TX, US), Lawrence, Liesl A. (Houston, TX, US), Published January 7, 2021
METHODS OF DETECTION AND TREATMENT OF HYPER TRANSCRIPTION DISEASES
BOARD OF REGENTS OF THE UNIVERSITY OF TEXAS SYSTEM (Austin, TX, US)
United States Patent Application 20210002677
Gonzalez, Ramon (Tampa, FL, US), Cheong, Seokjung (Emeryville, CA, US), Clomburg, James M. (Tampa, FL, US), Published January 7, 2021
SYNTHESIS OF OMEGA FUNCTIONALIZED PRODUCTS
United States Patent Application 20210002702
Yan, Hai (Durham, NC, US), Diplas, Bill H. (Durham, NC, US), Published January 7, 2021
Directing Treatments For Glioblastoma
Duke University (Durham, NC, US)
United States Patent Application 20200400671
Labaer, Joshua (Chandler, AZ, US), Anderson, Karen Sue (Chestnut Hill, MA, US), Wallstrom, Garrick (Mesa, AZ, US), Sibani, Sahar (Revere, MA, US), Ramachandran, Niroshan (San Marcos, CA, US), Published December 24, 2020
Biomarkers for the early detection of breast cancer
ARIZONA BOARD OF REGENTS, a body corporate acting for and on behalf of Arizona State University (Scottsdale, AZ, US), DANA-FARBER CANCER INSTITUTE, INC. (Boston, MA, US), PRESIDENT AND FELLOWS OF HARVARD COLLEGE (Cambridge, MA, US)
United States Patent Application 20200386754
Labaer, Joshua (Chandler, AZ, US), Qiu, Ji (Chandler, AZ, US), Karthikeyan, Kailash (Gilbert, AZ, US), Buckner, Jane (Seattle, WA, US), Nepom, Gerold (Seattle, WA, US), Published December 10, 2020
IDENTIFICATION AND MEDICAL APPLICATIONS OF ANTI-CITRULLINATED-PROTEIN ANTIBODIES IN RHEUMATOID ARTHRITIS
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US), BENAROYA RESEARCH INSTITURE AT VIRGINIA MASON (Seattle, WA, US)
United States Patent Application 20200368234
Reh, Thomas A. (Seattle, WA, US), Nakamura, Paul (Seattle, WA, US), Shimchuk, Andy (Seattle, WA, US), Tang, Shibing (Guangzhou, CN), Ding, Sheng (Orinda, CA, US), Published November 26, 2020
PHOTORECEPTOR GENE MODULATOR PHOTOREGULIN 3 FOR TREATMENT OF RETINAL DISEASE
University of Washington (Seattle, WA, US),THE J. DAVID GLADSTONE INSTITUTES (San Francisco, CA, US)
United States Patent Application 20200352999
Rao, Anjana (La Jolla, CA, US), Scott-browne, James (La Jolla, CA, US), Chen, Joyce (La Jolla, CA, US), Seo, Hyungseok (La Jolla, CA, US), Published November 12, 2020
USE AND PRODUCTION OF ENGINEERED IMMUNE CELLS TO DISRUPT NFAT-AP1 PATHWAY TRANSCRIPTION FACTORS
La Jolla Institute for Allergy and Immunology (La Jolla, CA, US)
United States Patent Application 20200348305
Insel, Paul A. (San Diego, CA, US), Lowy, Andrew M. (San Diego, CA, US), Wiley, Shu (Temecula, CA, US), French, Randall (San Diego, CA, US), Sriram, Krishna (San Diego, CA, US), Published November 5, 2020
GPCRs in Cancer-Associated Fibroblasts
The Regents of the University of California (Oakland, CA, US)
United States Patent Application 20200330595
Mor, Adam (Cresskill, NJ, US), Neel, Ben (New York, NY, US), Published October 22, 2020
PD-1 RELATED CANCER THERAPY
New York University (New York, NY, US)
United States Patent Application 20200325502
Gonzalez, Ramon (Tampa, FL, US), Clomburg, James M. (Houston, TX, US), Cheong, Seokjung (Emeryville, CA, US), Published October 15, 2020
ITERATIVE PLATFORM FOR THE SYNTHESIS OF ALPHA FUNCTIONALIZED PRODUCTS
United States Patent Application 20200308573
Labaer, Joshua (Chandler, AZ, US), Published October 1, 2020
NUCLEIC ACID-TAGGED COMPOSITIONS AND METHODS FOR MULTIPLEXED PROTEIN-PROTEIN INTERACTION PROFILING
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US)
United States Patent Application 20200289658
Stephanopoulos, Nicholas (Scottsdale, AZ, US), Xu, Yang (Chandler, AZ, US), Published September 17, 2020
TUNABLE NANOSCALE CAGES FROM SELF-ASSEMBLING DNA AND PROTEIN BUILDING BLOCKS
Arizona Board of Regents on Behalf of Arizona State University (Scottsdale, AZ, US)
United States Patent Application 20200277638
Gonzalez, Ramon (Tampa, FL, US), Clomburg, James M. (Tampa, FL, US), Published September 3, 2020
MODIFIED FATTY ACID BIOSYNTHESIS WITH ACP-DEPENDENT THIOLASES
United States Patent Application 20200262916
GDeretic, Vojo P. (Placitas, NM, US), Gu, Yuexi (Albuquerque, NM, US), Timmins, Graham (Albuquerque, NM, US), Published August 20, 2020
Mammalian Atg8 Proteins Control Autolysosomal Biogenesis Through SNARES
STC. UNM (ALBUQUERQUE, NM, US)
United States Patent Application 20200239921
Burgos, Emmanuel Sebastien (Bronx, NY, US), Shechter, David (New Rochells, NY, US), Published July 30, 2020
CHEMOENZYMATIC SYNTHESIS OF S-NUCLEOSYL AMINO ACIDS (SNA), ANALOGS OF S-ADENOSYL-L-METHIONINE AND S-ADENOSYL-L- HOMOCYSTEINE AND USES THEREOF
ALBERT EINSTEIN COLLEGE OF MEDICINE (Bronx, NY, US)
United States Patent Application 20200206198
Maiuri, Luigi (Napoli (NA), IT), Published July 2, 2020
CFTR CHANNEL ACTIVATOR FOR USE IN THE TREATMENT AND/OR PREVENTION OF GLUTEN SENSITIVITY CONDITIONS
United States Patent Application 20190324030
Tareen, Semih U. (Seattle, WA, US), Sissons, James (Seattle, WA, US), Frohlich, Mark (Mercer Island, WA, US), Ebens, Allen (San Carlos, CA, US), Published October 24, 2019
MHC-E RESTRICTED EPITOPES, BINDING MOLECULES AND RELATED METHODS AND USES
Juno Therapeutics, Inc. (Seattle, WA, US)
United States Patent Application 20190302122
Katchman, Benjamin (Tempe, AZ, US), Anderson, Karen (Scottsdale, AZ, US), Wallstrom, Garrick (Mesa, AZ, US), Labaer, Joshua (Chandler, AZ, US), Cramer, Daniel (Chestnut Hill, MA, US), Published October 3, 2019
AUTOANTIBODY BIOMARKERS FOR THE EARLY DETECTION OF OVARIAN CANCER
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US), THE BRIGHAM AND WOMEN'S HOSPITAL, INC. (Boston, MA, US)
United States Patent Application 20190285620
Green, Alexander (Scottsdale, AZ, US), Ma, Duo (Tempe, AZ, US), Shen, Luhui (Tempe, AZ, US), Diehnelt, Chris (Chandler, AZ, US), Published September 19, 2019
Low-Cost Detection of Norovirus Using Paper-Based Cell-Free Systems And Synbody-Based Viral Enrichment
Arizona Board of Regents on behalf of Arizona State University (Scottsdale, AZ, US)
United States Patent Application 20190275040
Strittmatter, Stephen (Durham, CT, US), Gunther, Erik (Branford, CT, US), Published September 12, 2019
COMPOUNDS AND METHODS FOR TREATING OR PREVENTING ALZHEIMER'S DISEASE
YALE UNIVERSITY (New Haven, CT, US)
United States Patent Application 20190225989
Cheng, Tao (Tianjin, CN), Zhang, Jianping (Tianjin, CN), LI, Xiaolan (Tianjin, CN), Zhang, Xiao-bing (Loma Linda, CA, US), Published July 25, 2019
GENE KNOCKIN METHOD AND KIT FOR GENE KNOCKIN
Institute of Hematology and Blood Disease Hospital, CAMS & PUMC (Tianjin, CN)
United States Patent Application 20190144898
San, Ka-yiu (Houston, TX, US), LI, Zhilin (Houston, TX, US), Zhang, Xian (Houston, TX, US), Published May 16, 2019
IMPROVED MICROBIAL PRODUCTION OF FATS
William Marsh Rice University (HOUSTON, TX, US)
United States Patent Application 20190144516
Lengyel, Ernst (Chicago, IL, US), Mann, Matthias (Munchen, DE), Curtis, Marion (Chicago, IL, US), Coscia, Fabian (München, DE), Published May 16, 2019
METHODS OF TREATING CANCERS WITH CT45 TARGETED THERAPIES
The University of Chicago (Chicago, IL, US), Max-Planck-Gesellschaft Zur Forderung Der Wissenschaften E.V. (Munchen, DE)
United States Patent Application 20190135878
Silberg, Jonathan (Houston, TX, US), Atkinson, Joshua T. (Houston, TX, US), Campbell, Ian J. (Houston, TX, US), Bennett, George N. (Houston, TX, US), Published May 9, 2019
REGULATING ELECTRON FLOW USING FRAGMENTED PROTEINS
WILLIAM MARSH RICE UNIVERSITY (Houston, TX, US)
United States Patent Application 20190127711
Tabor, Jeffrey J. (Houston, TX, US), Schmidl, Sebastian (Houston, TX, US), Sheth, Ravi (Houston, TX, US), Ekness, Felix (Houston, TX, US), Landry, Brian (Houston, TX, US), Dyuglyarov, Nikola (Houston, TX, US), Published May 2, 2019
IDENTIFYING LIGANDS FOR BACTERIAL SENSORS
William Marsh Rice University (Houston, TX, US)
United States Patent Application 20190119686
San, Ka-yiu (Houston, TX, US), Liu, Ping (Houston, TX, US), LI, Sha (Houston, TX, US), Published April 25, 2019
IMPROVED GALACTOSE UTILIZATION
WILLIAM MARSH RICE UNIVERSITY (Houston, TX, US)
United States Patent Application 20190100741
Gonzalez, Ramon (Houston, TX, US), Chou, Alexander (Houston, TX, US), Clomburg, James (Houston, TX, US), Published April 4, 2019
BIOSYNTHESIS OF PRODUCTS FROM 1-CARBON COMPOUNDS
United States Patent Application 20190078092
Alt, Eckhard (New Orleans, LA, US), Izadpanah, Reza (New Orleans, LA, US), Published March 14, 2019
PREVENTING TUMOR DEVELOPMENT AND METASTASIS
The Administrators of the Tulane Educational Fund (New Orleans, LA, US)
United States Patent Application 20190004051
Labaer, Joshua (Chandler, AZ, US), Qiu, Ji (Chandler, AZ, US), Wang, Jie (Tempe, AZ, US), Wallstrom, Garrick (Mesa, AZ, US), Park, Jin (Phoenix, AZ, US), Rom, William (New York, NY, US), Pass, Harvey (New York, NY, US), Published January 3, 2019
PLASMA AUTOANTIBODY BIOMARKERS FOR DIAGNOSIS OF LUNG CANCER
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US), NEW YORK UNIVERSITY (New York, NY, US)
United States Patent Application 20180371508
San, Ka-yiu (Houston, TX, US), Bennett, George N. (Houston, TX, US), Martinez, Irene (Houston, TX, US), Published December 27, 2018
MICROBIAL PRODUCTION OF SUCCINATE DERIVED PRODUCTS
WILLIAM MARSH RICE UNIVERSITY (Houston, TX, US)
United States Patent Application 20180363025
Tabor, Jeffrey J. (Houston, TX, US), Daeffler, Kristina N. M. (US, TX, US), Sheth, Ravi (Houston, TX, US), Published December 20, 2018
THIOSULFATE BIOSENSOR FOR GUT INFLAMMATION
William Marsh Rice University (Houston, TX, US)
United States Patent Application 20180355394
Gonzales, Ramon (Houston, TX, US), Published December 13, 2018
BIOCONVERSION OF SHORT-CHAIN HYDROCARBONS TO FUELS AND CHEMICALS
United States Patent Application 10137143 B1
Alt, Eckhard (New Orleans, LA, US), Izadpanah, Reza (New Orleans, LA, US), Published November 27, 2018
Preventing tumor development and metastasis
The Administrators of the Tulane Educational Fund (New Orleans, LA, US)
United States Patent Application 20180282701
Kim, Kitai (New York, NY, US), Skamagki, Maria (New York, NY, US), Dogan, Yildirim (New York, NY, US), October 4, 2018
METHOD TO REDUCE ONCOGENIC POTENTIAL OF INDUCED PLURIPOTENT STEM CELLS FROM AGED DONORS
MEMORIAL SLOAN-KETTERING CANCER CENTER (New York, NY, US)
United States Patent Application 20180258459
Tabor, Jeffrey J. (Houston, TX, US), Landry, Brian (Houston, TX, US), Dyulgyarov, Nikola (Houston, TX, US), Published September 13, 2018
NITRATE BIOSENSOR
William Marsh Rice University (Houston, TX, US)
United States Patent Application 20180236024
Deretic, Vojo P. (Placitas, NM, US), Kimura, Tomonori (Minoh City, JP), Published August 23, 2018
IRGM AND PRECISION AUTOPHAGY CONTROLS FOR ANTIMICROBIAL AND INFLAMMATORY DISEASE STATES AND METHODS OF DETECTION OF AUTOPHAGY
STC.UNM (Albuqerque, NM, US)
United States Patent Application 20180224448
Wang, Haoyu (New York, NY, US), Qiu, Ji (Chandler, AZ, US), Labaer, Joshua (Chandler, AZ, US), Leighton, Jonathan (Scottsdale, AZ, US), Pasha, Shabana (Scottsdale, AZ, US), Published August 9, 2018
METHODS FOR DETECTING NOVEL AUTOANTIBODIES IN CROHN'S DISEASE
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US), MAYO FOUNDATION FOR MEDICAL EDUCATION AND RESEARCH (Rochester, MN, US)
United States Patent Application 20180148746
San, Ka-yiu (Houston, TX, US), Zhang, Xian (Houston, TX, US), WU, Hui (Houston, TX, US), Wang, Dan (Houston, TX, US), Published May 31, 2018
KAS-III FREE FA SYNTHESIS
WILLIAM MARSH RICE UNIVERSITY (Houston, TX, US)
United States Patent Application 20180148492
Rothenberg, Marc E. (Cincinnati, OH, US), Caldwell, Julie (Cincinnati, OH, US), Published May 31, 2018
CDH26 BASED THERAPEUTIC AGENTS AND THEIR USE
Children's Hospital Medical Center (Cincinnati, OH, US)
United States Patent Application 20180142273
Gonzalez, Ramon (Houston, TX, US), Clomburg, James M. (Houston, TX, US), Cheong, Seokjung (Houston, TX, US), Published May 24, 2018
ITERATIVE PLATFORM FOR THE SYNTHESIS OF ALPHA FUNCTIONALIZED PRODUCTS
William Marsh Rice University (Houston, TX, US)
United States Patent Application 20180135059
Gonzalez, Ramon (Houston, TX, US), Cheong, Seokjung (Houston, TX, US), Clomburg, James M. (Houston, TX, US), Published May 17, 2018
SYNTHESIS OF OMEGA FUNCTIONALIZED PRODUCTS
William Marsh Rice University (Houston, TX, US)
United States Patent Application 20180127730
Gonzalez, Ramon (Houston, TX, US), Clomburg, James M. (Houston, TX, US), Published May 10, 2018
MODIFIED FATTY ACID BIOSYNTHESIS WITH ACP-DEPENDENT THIOLASES
William Marsh Rice University (Houston, TX, US)
United States Patent Application 20180119183
San, Ka-yiu (Houston, TX, US), Wang, Dan (Houston, TX, US), May 3, 2018
ALPHA OMEGA BIFUNCTIONAL FATTY ACIDS
William Marsh Rice University (Houston, TX, US)
United States Patent Application 20180104313
Kohtz, Jhumku D. (Chicago, IL, US), Published April 19, 2018
COMPOSITIONS AND METHODS OF TREATING NEUROLOGICAL DISORDER AND STRESS-INDUCED CONDITIONS
United States Patent Application 20180085348
Chen, Hongwu (Davis, CA, US), Zou X, June (Davis, CA, US), Wang, Junjian (Davis, CA, US), Published March 29, 2018
METHODS FOR TREATING CANCER WITH RORGAMMA INHIBITORS
THE REGENTS OF THE UNIVERSITY OF CALIFORNIA (Oakland, CA, US)
United States Patent Application 20180010118
Weiner, Michael (Guilford, CT, US), Busygina, Valeria (North Haven, CT, US), Published January 11, 2018
METHODS OF IDENTIFYING AND VALIDATING AFFINITY REAGENTS
AxioMx, Inc. (Branford, CT, US)
United States Patent Application 20170363631
Labaer, Joshua (Chandler, AZ, US), Wang, Jie (Glendale, AZ, US), Qiu, Ji (Chandler, AZ, US), Wallstrom, Garrick (Mesa, AZ, US), Anderson, Karen (Scottsdale, AZ, US), Park, Jin (Phoenix, AZ, US), Figueroa, Jonine (Edinburgh, GB), December 21, 2017
PLASMA AUTOANTIBODY BIOMARKERS FOR BASAL LIKE BREAST CANCER
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US), NATIONAL INSTITUTES OF HEALTH (Bethesda, MD, US)
United States Patent Application 20170362630
Kiuchi, Tai (Kyoto, JP), Watanabe, Naoki (Kyoto, JP), Miyoshi, Takushi (Kyoto, JP), Sasaki, Ryo (Kyoto, JP), Published December 21, 2017
OBSERVATION METHOD USING BINDING AND DISSOCIATION PROBE
KYOTO UNIVERSITY (Kyoto-shi, JP)
United States Patent Application 20170362282
Snow, Christopher D. (Fort Collins, CO, US), Huber, Thaddaus R. (Fort Collins, CO, US), Published December 21, 2017
ENGINEERED PROGRAMMABLE MOLECULAR SCAFFOLDS FROM POROUS PROTEIN CRYSTALS
Colorado State University Research Foundation (Fort Collins, CO, US)
United States Patent Application 20170307590
ruz, Paul (St. Louis, MO, US), Kraft, Thomas E. (St. Louis, MO, US), Debosch, Brian (St. Louis, MO, US), Published October 26, 2017
INHIBITORS OF MALARIAL AND HUMAN GLUCOSE TRANSPORTERS AND METHODS FOR IDENTIFYING THE INHIBITORS
Washington University in St. Louis (St. Louis, MO, US)
United States Patent Application 20170205409
Anderson, Karen (Scottsdale, AZ, US), Unger, Elizabeth (Atlanta, GA, US), Published July 20, 2017
HPV16 Antibodies as Diagnostic and Prognostic Biomarkers in Pre-Invasive and Invasive Disease
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US), The United States of America, as Represented by the Secretary, Department of Health and Human Serv (Bethesda, MD, US)
United States Patent Application 20170176423
Anderson, Karen (Scottsdale, AZ, US), Cheng, Julia (Tempe, AZ, US), Labaer, Joshua (Chandler, AZ, US), Published June 22, 2017
MAGNETIC PROGRAMMABLE BEAD ENZYME-LINKED IMMUNOSORBENT ASSAY
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSTIY (Scottsdale, AZ, US)
United States Patent Application 20170122958
Shiao, Enrique Lin (Philadelphia, PA, US), Baud, Matthias Gerard Jacky (Cambridge, GB), Ciulli, Alessio (Dundee, GB), Chan, Kwok-ho (Dundee, GB), Zengerle, Michael (Dundee, GB), Published May 4, 2017
Enzymes Functional Probes
University of Dundee,Cambridge Enterprise Limited
United States Patent Application 20170059563
Smith, Joseph (Tempe, AZ, US), Blain Christen, Jennifer (Chandler, AZ, US), Anderson, Karen (Scottsdale, AZ, US), Katchman, Benjamin (Tempe, AZ, US), Published March 2, 2017
FLEXIBLE OPTICAL BIOSENSOR FOR POINT OF USE MULTI-PATHOGEN DETECTION
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US)
United States Patent Application 20170045515
Anderson, Karen (Scottsdale, AZ, US), Posner, Marshall (Mount Vernon, NY, US), Labaer, Joshua (Chandler, AZ, US), Published February 16, 2017
NOVEL METHODS, BIOASSAYS, AND BIOMARKERS FOR HPV-RELATED CONDITIONS
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US)
United States Patent Application 20170044609
Guttman, Mitchell (West Hollywood, CA, US), Chen, Chun-kan (Alhambra, CA, US), Mchugh, Colleen A. (Altadena, CA, US), Published February 16, 2017
REACTIVATION OF X CHROMOSOME GENES
CALIFORNIA INSTITUTE OF TECHNOLOGY (Pasadena, CA, US)
United States Patent Application 20170009241
San, Ka-yiu (Houston, TX, US), Bennett, George N. (Houston, TX, US), WU, Hui (Houston, TX, US), Published January 12, 2017
METABOLIC TRANSISTOR IN BACTERIA
William Marsh Rice University (Houston, TX, US)
United States Patent Application 20160339427
Wiktor, Peter (Phoenix, AZ, US), Published November 24, 2016
MICROREACTOR ARRAY PLATFORM
ARIZONA BOARD OF REGENTS ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US)
United States Patent Application 20160340405
Gardner, Matthew (Jupiter, FL, US), Farzan, Michael (Juno Beach, FL, US), Published November 24, 2016
METHODS AND COMPOSITIONS FOR PROTECTION AGAINST LENTIVIRAL INFECTIONS
United States Patent Application 20160319035
Dessain, Scott Kendall (Wynnewood, PA, US), Heimbach, Baron Christopher (Havertown, PA, US), Published November 3, 2016
PDK1 BINDING MOLECULES AND USES THEREOF
United States Patent Application 20160313304
Guttman, Mitchell (West Hollywood, CA, US), Chen, Chun-kan (Alhambra, CA, US), Mchugh, Colleen A. (Altadena, CA, US), Published October 27, 2016
REACTIVATION OF X CHROMOSOME GENES
CALIFORNIA INSTITUTE OF TECHNOLOGY (Pasadena, CA, US)
United States Patent Application 20160258944
Wiktor, Peter (Phoenix, AZ, US), Published September 8, 2016
Integrated Microreactor Array System
United States Patent Application 20160215309
Sun, Ka-yiu (Houston, TX, US), LI, Wei (Houston, TX, US), Published July 28, 2016
FATTY ACID PRODUCTIVITY
WILLIAM MARSH RICE UNIVERSITY (Houston, TX, US)
United States Patent Application 20160122751
Labaer, Joshua (Chandler, AZ, US), Published May 5, 2016
NUCLEIC ACID-TAGGED COMPOSITIONS AND METHODS FOR MULTIPLEXED PROTEIN-PROTEIN INTERACTION PROFILING
United States Patent Application 20160040171
San, Ka-yiu (Houston, TX, US), Bennett, George (Houston, TX, US), Karanjikar, Mukund (West Valley City, UT, US), Published February 11, 2016
METHOD TO PRODUCE HYDROCARBON FROM C-1 SUBSTRATE
WILLIAM MARSH RICE UNIVERSITY,TECHNOLOGY HOLDING LLC
United States Patent Application 20150376252
Xu, Huaqiang Eric (Grand Rapids, MI, US), Ke, Jiyuan (Grand Rapids, MI, US), Published December 31, 2015
Norrin Mutant Polypeptides, Methods of Making and Uses Thereof
VAN ANDEL RESEARCH INSTITUTE (Grand Rapids, MI, US)
United States Patent Application 20150376658
Bennett, George (Houston, TX, US), Thakker, Chandresh (Houston, TX, US), Published December 31, 2015
MAKING C4+ PRODUCTS IN BACTERIA
WILLIAM MARSH RICE UNIVERSITY
United States Patent Application 20150362497
Anderson, Karen (Scottsdale, AZ, US), Labaer, Joshua (Chandler, AZ, US), Wallstrom, Garrick (Mesa, AZ, US), Cramer, Daniel (Chestnut Hill, AZ, US), Published December 17, 2015
Autoantibody Signature for the Early Detection of Ovarian Cancer
Arizona Board of Regents on behalf of Arizona State University (Scottsdale, AZ, US)
United States Patent Application 20150322150
Weiner, Michael (Branford, CT, US), Kiss, Margaret (Westbrook, CT, US), Published November 12, 2015
COMPOSITIONS AND METHODS FOR THE IDENTIFICATION AND ISOLATION OF CELL-MEMBRANE PROTEIN SPECIFIC BINDING MOIETIES
AXIOMX, INC.
United States Patent Application 20150259429
Benaroch, Philippe (Paris, FR), Berre, Stefano (Vincennes, FR), Published September 17, 2015
CLUSTER OF DIFFERENTIATION 36 (CD36) AS A THERAPEUTIC TARGET FOR HIV INFECTION
INSTITUT CURIE, INSERM (INSTITUT NATIONAL DE LA SANTE ET DE LA RECHERCHE MEDICALE)
United States Patent Application 20150225753
San, Ka-yiu (Houston, TX, US), Xie, Xixian (Houston, TX, US), Tuli, Leepika (Houston, TX, US), WU, Hui (Houston, TX, US), Published August 13, 2015
HYDROXY- AND DICARBOXYLIC-FAT SYNTHSIS BY MICROBES
MARSH RICE UNIVERSITY
United States Patent Application 20150140665
Calos, Michele Pamela (Menlo Park, CA, US), Tsai, Ruby Yanru (San Jose, CA, US), Zhu, Fangfang (Palo Alto, CA, US), Gamboa, Matthew (Palo Alto, CA, US), Farruggio, Alfonso P. (McAllen, TX, US), Hippenmeyer, Simon (Menlo Park, CA, US), Tasic, Bosiljka (Seattle, WA, US), Schüle, Birgitt (Sunnyvale, CA, US), Published May 21, 2015
Site-Specific Integration of Transgenes into Human Cells
THE BOARD OF TRUSTEES OF THE LELAND STANFORD JUNIOR UNIVERSITY
United States Patent Application 20140371091
Wiktor, Peter (Phoenix, AZ, US), Labaer, Joshua (Chandler, AZ, US), Kahn, Peter (Phoenix, AZ, US), Takulapalli, Bharath (Tempe, AZ, US), Qiu, Ji (Chandler, AZ, US), Brunner, Al (Phoenix, AZ, US), Magee, Mitch (Chandler, AZ, US), Published December 18, 2014
Programmable Arrays
ARIZONA BOARD OF REGENTS, A BODY CORPORATE OF THE STATE OF ARIZONA, ACTING FOR AND ON BEHALF OF, ENGINEERING ARTS LLC
United States Patent Application 20140370563
Shanklin, John (Shoreham, NY, US), Andre, Carl (Raleigh, NC, US), Published December 18, 2014
COMPOSITIONS AND METHODS FOR THE RELIEF OF INHIBITION OF ALDEHYDE DECARBONYLASE
BROOKHAVEN SCIENCE ASSOCIATES, LLC (Upton, NY, US)
United States Patent Application 20140335578
San, Ka-yiu (Houston, TX, US), WU, Hui (Houston, TX, US), Published November 13, 2014
INTEGRATED BIODIESEL PROCESS
William Marsh Rice University (Houston, TX, US)
United States Patent Application 20140141015
Lake, Douglas (Scottsdale, AZ, US), Katchman, Benjamin (Tempe, AZ, US), Published May 22, 2014
QSOX1 as an Anti-Neoplastic Drug Target
United States Patent Application 20130345118
Rolle, Marsha (Worcester, MA, US), Prifti, Fioleda (Worcester, MA, US), Malcuit, Chris (Kent State, OH, US), Camesano, Terri Anne (Worcester, MA, US), Dominko, Tanja (Worcester, MA, US), Published December 26, 2013
MATRIX SCAFFOLD WITH ANTIMICROBIAL ACTIVITY
United States Patent Application 20130150259
Labaer, Joshua (Chandler, AZ, US), Anderson, Karen Sue (Chestnut Hill, MA, US), Wallstrom, Garrick (Mesa, AZ, US), Sibani, Sahar (La Mesa, CA, US), Ramachandran, Niroshan (San Marcos, CA, US), Published June 13, 2013
BIOMARKERS FOR THE EARLY DETECTION OF BREAST CANCER
DANA-FARBER CANCER INSTITUTE, INC. (Boston, MA, US), ARIZONA BOARD OF REGENTS, A BODY CORPORATE ACTING FOR AND ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US)
WIPO Patent Application WO/2013/063126
Wiktor, Peter, Labaer, Joshua, Kahn, Peter, Takulapalli, Bharath, Qiu, Ji, Brunner, Al, Magee, Mitch, Published May 2, 2013
PROGRAMMABLE ARRAYS
ARIZONA BOARD OF REGENTS, A BODY CORPORATE ACTING FOR AND ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US)
United States Patent Application 20130085072
Bradbury, Andrew M. (Santa Fe, NM, US), Kiss, Csaba (Los Alamos, NM, US), D'angelo, Sara (Los Alamos, NM, US), Ferrara, Fortunato (Los Alamos, NM, US), Naranjo, Leslie A. (Los Alamos, NM, US), Gaiotto, Tiziano (Los Alamos, NM, US), Published April 4, 2013
RECOMBINANT RENEWABLE POLYCLONAL ANTIBODIES
LOS ALAMOS NATIONAL SECURITY, LLC (Los Alamos, NM, US)
WIPO Patent Application WO/2013/032891
Shanklin, John (Shoreham, US), Andre, Carl (Patchogue, NY, US), Published March 7, 2013
COMPOSITIONS AND METHODS FOR THE RELIEF OF INHIBITION OF ALDEHYDE DECARBONYLASE
BROOKHAVEN SCIENCE ASSOCIATES, LLC (Upton, NY, US)
United States Patent Application 20120252691
Etienne, Christopher L. (Fitchburg, WI, US), Opperman, Kay K. (Rockton, IL, US), Kaboord, Barbara J. (Oregon, WI, US), Meier, Scott (Rockford, IL, US), Schultz, Jean-samuel (Rockford, IL, US), Published October 4, 2012
MODIFIED NUCLEOTIDES METHODS AND KITS
Pierce Biotechnology, Inc. (Rockford, IL, US)
WIPO Patent Application WO/2012/040095
Lake, Douglas (Scottsdale, AZ, US), Katchman, Benjamin (Tempe, AZ, US), Published March 29, 2012
QSOX1 AS AN ANTI-NEOPLASTIC DRUG TARGET
ARIZONA BOARD OF REGENTS, A BODY CORPORATE ACTING FOR AND ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US)
WIPO Patent Application WO/2012/021887
Labaer, Joshua (Chandler, AZ, US), Anderson, Karen, Sue (Chestnut Hill, MA, US), Wallstrom, Garrick (Mesa, AZ, US), Sibani, Sahar (Revere, MA, US), Ramachandran, Niroshan (San Marcos, CA, US), Published February 16, 2012
BIOMARKERS FOR THE EARLY DETECTION OF BREAST CANCER
ARIZONA BOARD OF REGENTS, A BODY CORPORATE ACTING FOR AND ON BEHALF OF ARIZONA STATE UNIVERSITY (Scottsdale, AZ, US), DANA-FARBER CANCER INSTITUTE, INC. (Boston, MA, US)
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Shome, M., & Labaer, J. (2023). Protein Microarrays and their Fabrication. Methods in molecular biology (Clifton, N.J.), 2597, 131?142. https://doi.org/10.1007/978-1-0716-2835-5_11
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Zaharija, B., & Bradshaw, N. J. (2023). Mapping the Domain Structure and Aggregation Propensity of Proteins Using a Gateway Plasmid Vector System. Methods in molecular biology (Clifton, N.J.), 2551, 649?677. https://doi.org/10.1007/978-1-0716-2597-2_39
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Malaga Gadea, F. C., & Nikolova, E. N. (2023). Structural Plasticity of Pioneer Factor Sox2 and DNA Bendability Modulate Nucleosome Engagement and Sox2-Oct4 Synergism. Journal of molecular biology, 435(2), 167916. https://doi.org/10.1016/j.jmb.2022.167916
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Calle, B., Gonzalez-Rodriguez, E., Mahoney, K. E., Cioce, A., Bineva-Todd, G., Tastan, O. Y., Roustan, C., Flynn, H., Malaker, S. A., & Schumann, B. (2023). Bump-and-hole engineering of human polypeptide N-acetylgalactosamine transferases to dissect their protein substrates and glycosylation sites in cells. STAR protocols, 4(1), 101974. Advance online publication. https://doi.org/10.1016/j.xpro.2022.101974
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Park, H., Hundley, F. V., Yu, Q., Overmyer, K. A., Brademan, D. R., Serrano, L., Paulo, J. A., Paoli, J. C., Swarup, S., Coon, J. J., Gygi, S. P., & Wade Harper, J. (2022). Spatial snapshots of amyloid precursor protein intramembrane processing via early endosome
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Han, H., Nakaoka, H. J., Hofmann, L., Zhou, J. J., Yu, C., Zeng, L., Nan, J., Seo, G., Vargas, R. E., Yang, B., Qi, R., Bardwell, L., Fishman, D. A., Cho, K., Huang, L., Luo, R., Warrior, R., & Wang, W. (2022). The Hippo pathway kinases LATS1 and LATS2 attenuate cellular responses to heavy metals through phosphorylating MTF1. Nature cell biology, 24(1), 74-87. https://doi.org/10.1038/s41556-021-00813-8
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Fuentes, M., Srivastava, S., Gronenborn, A. M., & LaBaer, J. (2021). A Quantitative Systems Approach to Define Novel Effects of Tumour p53 Mutations on Binding Oncoprotein MDM2. International journal of molecular sciences, 23(1), 53. https://doi.org/10.3390/ijms23010053
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Lieb, A., Thaler, G., Fogli, B., Trovato, O., Posch, M. A., Kaserer, T., & Zangrandi, L. (2021). Functional Characterization of Spinocerebellar Ataxia Associated Dynorphin A Mutant Peptides. Biomedicines, 9(12), 1882. https://doi.org/10.3390/biomedicines9121882
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Rauner, G., Jin, D. X., Miller, D. H., Gierahn, T. M., Li, C. M., Sokol, E. S., Feng, Y. X., Mathis, R. A., Love, J. C., Gupta, P. B., & Kuperwasser, C. (2021). Breast tissue regeneration is driven by cell-matrix interactions coordinating multi-lineage stem cell differentiation through DDR1. Nature communications, 12(1), 7116. https://doi.org/10.1038/s41467-021-27401-6
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Jia, J., Claude-Taupin, A., Gu, Y., Choi, S. W., Peters, R., Bissa, B., Mudd, M. H., Allers, L., Pallikkuth, S., Lidke, K. A., Salemi, M., Phinney, B., Mari, M., Reggiori, F., & Deretic, V. (2020). Galectin-3 Coordinates a Cellular System for Lysosomal Repair and Removal. Developmental cell, 52(1), 69-87.e8. https://doi.org/10.1016/j.devcel.2019.10.025
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Nicosia, L., Boffo, F. L., Ceccacci, E., Conforti, F., Pallavicini, I., Bedin, F., Ravasio, R., Massignani, E., Somervaille, T., Minucci, S., & Bonaldi, T. (2022). Pharmacological inhibition of LSD1 triggers myeloid differentiation by targeting GSE1 oncogenic functions in AML. Oncogene, 41(6), 878-894. https://doi.org/10.1038/s41388-021-02123-7
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Hogan, A. K., Sathyan, K. M., Willis, A. B., Khurana, S., Srivastava, S., Zasadzinska, E., Lee, A. S., Bailey, A. O., Gaynes, M. N., Huang, J., Bodner, J., Rosencrance, C. D., Wong, K. A., Morgan, M. A., Eagen, K. P., Shilatifard, A., & Foltz, D. R. (2021). UBR7 acts as a histone chaperone for post-nucleosomal histone H3. The EMBO journal, 40(24), e108307. https://doi.org/10.15252/embj.2021108307
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Coutelier, M., Jacoupy, M., Janer, A., Renaud, F., Auger, N., Saripella, G. V., Ancien, F., Pucci, F., Rooman, M., Gilis, D., Larivière, R., Sgarioto, N., Valter, R., Guillot-Noel, L., Le Ber, I., Sayah, S., Charles, P., Nümann, A., Pauly, M. G., Helmchen, C., ... Stevanin, G. (2021). NPTX1 mutations trigger endoplasmic reticulum stress and cause autosomal dominant cerebellar ataxia. Brain : a journal of neurology, awab407. Advance online publication. https://doi.org/10.1093/brain/awab407
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Schworer, S., Pavlova, N. N., Cimino, F. V., King, B., Cai, X., Sizemore, G. M., & Thompson, C. B. (2021). Fibroblast pyruvate carboxylase is required for collagen production in the tumour microenvironment. Nature metabolism, 3(11), 1484-1499. https://doi.org/10.1038/s42255-021-00480-x
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Kumari, R., Hummerich, H., Shen, X., Fischer, M., Litovchick, L., Mittnacht, S., DeCaprio, J. A., & Jat, P. S. (2021). Simultaneous expression of MMB-FOXM1 complex components enables efficient bypass of senescence. Scientific reports, 11(1), 21506. https://doi.org/10.1038/s41598-021-01012-z
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Linares, J. F., Zhang, X., Martinez-Ordonez, A., Duran, A., Kinoshita, H., Kasashima, H., Nakanishi, N., Nakanishi, Y., Carelli, R., Cappelli, L., Arias, E., Yashiro, M., Ohira, M., Patel, S., Inghirami, G., Loda, M., Cuervo, A. M., Diaz-Meco, M. T., & Moscat, J. (2021). PKC λ/ι inhibition activates an ULK2-mediated interferon response to repress tumorigenesis. Molecular cell, 81(21), 4509-4526.e10. https://doi.org/10.1016/j.molcel.2021.08.039
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Samardzija, B., Pavesic Radonja, A., Zaharija, B., Bergman, M., Renner, E., Palkovits, M., Rubesa, G., & Bradshaw, N. J. (2021). Protein Aggregation of NPAS3, Implicated in Mental Illness, Is Not Limited to the V304I Mutation. Journal of personalized medicine, 11(11), 1070. https://doi.org/10.3390/jpm11111070
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Bhandari, B. K., Lim, C. S., Remus, D. M., Chen, A., van Dolleweerd, C., & Gardner, P. P. (2021). Analysis of 11,430 recombinant protein production experiments reveals that protein yield is tunable by synonymous codon changes of translation initiation sites. PLoS computational biology, 17(10), e1009461. https://doi.org/10.1371/journal.pcbi.1009461
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Fisher, A. L., Srole, D. N., Palaskas, N. J., Meriwether, D., Reddy, S. T., Ganz, T., & Nemeth, E. (2021). Iron loading induces cholesterol synthesis and sensitizes endothelial cells to TNFα -mediated apoptosis. The Journal of biological chemistry, 297(4), 101156. https://doi.org/10.1016/j.jbc.2021.101156
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Smith, C. M., Li, A., Krishnamurthy, N., & Lemmon, M. A. (2021). Phosphatidylserine binding directly regulates TIM-3 function. The Biochemical journal, 478(17), 3331-3349. https://doi.org/10.1042/BCJ20210425
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Borghesan, E., Smith, E. P., Myeni, S., Binder, K., Knodler, L. A., & Celli, J. (2021). A Brucella effector modulates the Arf6-Rab8a GTPase cascade to promote intravacuolar replication. The EMBO journal, 40(19), e107664. https://doi.org/10.15252/embj.2021107664
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Puthenveetil, R., Lun, C. M., Murphy, R. E., Healy, L. B., Vilmen, G., Christenson, E. T., Freed, E. O., & Banerjee, A. (2021). S-acylation of SARS-CoV-2 spike protein: Mechanistic dissection, in vitro reconstitution and role in viral infectivity. The Journal of biological chemistry, 297(4), 101112. https://doi.org/10.1016/j.jbc.2021.101112
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Santilli, R. T., Williamson, J. E., 3rd, Shibata, Y., Sowers, R. P., Fleischman, A. N., & Tan, S. (2021). The Penn State Protein Ladder system for inexpensive protein molecular weight markers. Scientific reports, 11(1), 16703. https://doi.org/10.1038/s41598-021-96051-x
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Gao, F. J., Klinedinst, D., Fernandez, F. X., Cheng, B., Savonenko, A., Devenney, B., Li, Y., Wu, D., Pomper, M. G., & Reeves, R. H. (2021). Forebrain Shh overexpression improves cognitive function and locomotor hyperactivity in an aneuploid mouse model of Down syndrome and its euploid littermates. Acta neuropathologica communications, 9(1), 137. https://doi.org/10.1186/s40478-021-01237-z
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Maron, M. I., Lehman, S. M., Gayatri, S., DeAngelo, J. D., Hegde, S., Lorton, B. M., Sun, Y., Bai, D. L., Sidoli, S., Gupta, V., Marunde, M. R., Bone, J. R., Sun, Z. W., Bedford, M. T., Shabanowitz, J., Chen, H., Hunt, D. F., & Shechter, D. (2021). Independent transcriptomic and proteomic regulation by type I and II protein arginine methyltransferases. iScience, 24(9), 102971. https://doi.org/10.1016/j.isci.2021.102971
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Casey, C. A., Macke, A. J., Gough, R. R., Pachikov, A. N., Morris, M. E., Thomes, P. G., Kubik, J. L., Holzapfel, M. S., & Petrosyan, A. (2022). Alcohol-Induced Liver Injury: Down-regulation and Redistribution of Rab3D Results in Atypical Protein Trafficking. Hepatology communications, 6(2), 374-388. https://doi.org/10.1002/hep4.1811
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Li, D., & Mukhopadhyay, S. (2021). A three-pocket model for substrate coordination and selectivity by the nucleotide sugar transporters SLC35A1 and SLC35A2. The Journal of biological chemistry, 297(3), 101069. https://doi.org/10.1016/j.jbc.2021.101069
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Izadifar, A., Courchet, J., Virga, D. M., Verreet, T., Hamilton, S., Ayaz, D., Misbaer, A., Vandenbogaerde, S., Monteiro, L., Petrovic, M., Sachse, S., Yan, B., Erfurth, M. L., Dascenco, D., Kise, Y., Yan, J., Edwards-Faret, G., Lewis, T., Polleux, F., & Schmucker, D. (2021). Axon morphogenesis and maintenance require an evolutionary conserved safeguard function of Wnk kinases antagonizing Sarm and Axed. Neuron, 109(18), 2864-2883.e8. https://doi.org/10.1016/j.neuron.2021.07.006
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Vologzhannikova, A. A., Shevelyova, M. P., Kazakov, A. S., Sokolov, A. S., Borisova, N. I., Permyakov, E. A., Kircheva, N., Nikolova, V., Dudev, T., & Permyakov, S. E. (2021). Strontium Binding to α-Parvalbumin, a Canonical Calcium-Binding Protein of the "EF-Hand" Family. Biomolecules, 11(8), 1158. https://doi.org/10.3390/biom11081158
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Graffunder, A. S., Paisdzior, S., Opitz, R., Renko, K., Kuhnen, P., & Biebermann, H. (2022). Design and Characterization of a Fluorescent Reporter Enabling Live-cell Monitoring of MCT8 Expression. Experimental and clinical endocrinology & diabetes : official journal, German Society of Endocrinology [and] German Diabetes Association, 130(2), 134-140. https://doi.org/10.1055/a-1522-8535
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Yang, G. H., Fontaine, D. A., Lodh, S., Blumer, J. T., Roopra, A., & Davis, D. B. (2021). TCF19 Impacts a Network of Inflammatory and DNA Damage Response Genes in the Pancreatic β-Cell. Metabolites, 11(8), 513. https://doi.org/10.3390/metabo11080513
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Wu, H., Shajahan, A., Yang, J. Y., Capota, E., Wands, A. M., Arthur, C. M., Stowell, S. R., Moremen, K. W., Azadi, P., & Kohler, J. J. (2022). A photo-cross-linking GlcNAc analog enables covalent capture of N-linked glycoprotein-binding partners on the cell surface. Cell chemical biology, 29(1), 84-97.e8. https://doi.org/10.1016/j.chembiol.2021.07.007
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Hung, W. Y., Lee, W. J., Cheng, G. Z., Tsai, C. H., Yang, Y. C., Lai, T. C., Chen, J. Q., Chung, C. L., Chang, J. H., & Chien, M. H. (2021). Blocking MMP-12-modulated epithelial-mesenchymal transition by repurposing penfluridol restrains lung adenocarcinoma metastasis via uPA/uPAR/TGF-β/Akt pathway. Cellular oncology (Dordrecht), 44(5), 1087-1103. https://doi.org/10.1007/s13402-021-00620-1
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Laliotis, G. I., Chavdoula, E., Paraskevopoulou, M. D., Kaba, A., La Ferlita, A., Singh, S., Anastas, V., Nair, K. A., 2nd, Orlacchio, A., Taraslia, V., Vlachos, I., Capece, M., Hatzigeorgiou, A., Palmieri, D., Tsatsanis, C., Alaimo, S., Sehgal, L., Carbone, D. P., Coppola, V., & Tsichlis, P. N. (2021). AKT3-mediated IWS1 phosphorylation promotes the proliferation of EGFR-mutant lung adenocarcinomas through cell cycle-regulated U2AF2 RNA splicing. Nature communications, 12(1), 4624. https://doi.org/10.1038/s41467-021-24795-1
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Liu, Q., Bautista-Gomez, J., Higgins, D. A., Yu, J., & Xiong, Y. (2021). Dysregulation of the AP2M1 phosphorylation cycle by LRRK2 impairs endocytosis and leads to dopaminergic neurodegeneration. Science signaling, 14(693), eabg3555. https://doi.org/10.1126/scisignal.abg3555
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Wan, Z., Zhang, S., Zhong, A. X., Shelton, S. E., Campisi, M., Sundararaman, S. K., Offeddu, G. S., Ko, E., Ibrahim, L., Coughlin, M. F., Liu, T., Bai, J., Barbie, D. A., & Kamm, R. D. (2021). A robust vasculogenic microfluidic model using human immortalized endothelial cells and Thy1 positive fibroblasts. Biomaterials, 276, 121032. https://doi.org/10.1016/j.biomaterials.2021.121032
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Sanderson, M. R., Fahlman, R. P., & Wevrick, R. (2021). The N-terminal domain of the Schaaf-Yang syndrome protein MAGEL2 likely has a role in RNA metabolism. The Journal of biological chemistry, 297(2), 100959. https://doi.org/10.1016/j.jbc.2021.100959
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Wang, H., Poe, A., Pak, L., Nandakumar, K., Jandu, S., Steppan, J., Loser, R., & Santhanam, L. (2021). An in situ activity assay for lysyl oxidases. Communications biology, 4(1), 840. https://doi.org/10.1038/s42003-021-02354-0
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Nagarajan, S., Qian, Z. Y., Marimuthu, P., Alkayed, N. J., Kaul, S., & Barnes, A. P. (2021). Mapping the Molecular Architecture Required for Lipid-Binding Pockets Using a Subset of Established and Orphan G-Protein Coupled Receptors. Journal of chemical information and modeling, 61(7), 3442-3452. https://doi.org/10.1021/acs.jcim.1c00335
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Zhang, Q., Dong, X., Lu, J., Song, J., & Wang, Y. (2021). Chemoproteomic Approach toward Probing the Interactomes of Perfluoroalkyl Substances. Analytical chemistry, 93(27), 9634-9639. https://doi.org/10.1021/acs.analchem.1c01948
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Shen, Y., Tang, K., Chen, D., Hong, M., Sun, F., Wang, S., Ke, Y., Wu, T., Sun, R., Qian, J., & Du, Y. (2021). Riok3 inhibits the antiviral immune response by facilitating TRIM40-mediated RIG-I and MDA5 degradation. Cell reports, 35(12), 109272. https://doi.org/10.1016/j.celrep.2021.109272
PMID: 34169630
Arslanhan, M. D., Rauniyar, N., Yates, J. R., 3rd, & Firat-Karalar, E. N. (2021). Aurora Kinase A proximity map reveals centriolar satellites as regulators of its ciliary function. EMBO reports, 22(8), e51902. https://doi.org/10.15252/embr.202051902
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Prabhu, S. K., Li, C., Zong, G., Zhang, R., & Wang, L. X. (2021). Comparative studies on the substrate specificity and defucosylation activity of three α-l-fucosidases using synthetic fucosylated glycopeptides and glycoproteins as substrates. Bioorganic & medicinal chemistry, 42, 116243. https://doi.org/10.1016/j.bmc.2021.116243
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Pipathsouk, A., Brunetti, R. M., Town, J. P., Graziano, B. R., Breuer, A., Pellett, P. A., Marchuk, K., Tran, N. T., Krummel, M. F., Stamou, D., & Weiner, O. D. (2021). The WAVE complex associates with sites of saddle membrane curvature. The Journal of cell biology, 220(8), e202003086. https://doi.org/10.1083/jcb.202003086
PMID: 34108442
Guo, H. H., Xiong, L., Pan, J. X., Lee, D., Liu, K., Ren, X., Wang, B., Yang, X., Cui, S., Mei, L., & Xiong, W. C. (2021). Hepcidin contributes to Swedish mutant APP-induced osteoclastogenesis and trabecular bone loss. Bone research, 9(1), 31. https://doi.org/10.1038/s41413-021-00146-0
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Meric, G., Naik, S., Hunter, A. K., Robinson, A. S., & Roberts, C. J. (2021). Challenges for design of aggregation-resistant variants of granulocyte colony-stimulating factor. Biophysical chemistry, 277, 106630. https://doi.org/10.1016/j.bpc.2021.106630
PMID: 34137443
Maverick, E. E., Leek, A. N., & Tamkun, M. M. (2021). Kv2 channel-AMIGO β-subunit assembly modulates both channel function and cell adhesion molecule surface trafficking. Journal of cell science, 134(12), jcs256339. https://doi.org/10.1242/jcs.256339
PMID: 34019879
Brewster, J. L., Pachl, P., McKellar, J., Selmer, M., Squire, C. J., & Patrick, W. M. (2021). Structures and kinetics of Thermotoga maritima MetY reveal new insights into the predominant sulfurylation enzyme of bacterial methionine biosynthesis. The Journal of biological chemistry, 296, 100797. https://doi.org/10.1016/j.jbc.2021.100797
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Davila, A., Liu, L., Chellappa, K., Redpath, P., Nakamaru-Ogiso, E., Paolella, L. M., Zhang, Z., Migaud, M. E., Rabinowitz, J. D., & Baur, J. A. (2018). Nicotinamide adenine dinucleotide is transported into mammalian mitochondria. eLife, 7, e33246. https://doi.org/10.7554/eLife.33246
PMID: 33976187
Yang, C. S., Jividen, K., Kamata, T., Dworak, N., Oostdyk, L., Remlein, B., Pourfarjam, Y., Kim, I. K., Du, K. P., Abbas, T., Sherman, N. E., Wotton, D., & Paschal, B. M. (2021). Androgen signaling uses a writer and a reader of ADP-ribosylation to regulate protein complex assembly. Nature communications, 12(1), 2705. https://doi.org/10.1038/s41467-021-23055-6
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Olson, T. L., Zhang, S., Labban, D., Kaschner, E., Aceves, M., Iyer, S., Meza-Aguilar, J. D., Zook, J. D., Chun, E., Craciunescu, F. M., Liu, W., Shi, C. X., Stewart, A. K., Hansen, D. T., Meurice, N., & Fromme, P. (2021). Protein expression and purification of G-protein coupled receptor kinase 6 (GRK6), toward structure-based drug design and discovery for multiple myeloma. Protein expression and purification, 185, 105890. https://doi.org/10.1016/j.pep.2021.105890
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Michalska, K., & Joachimiak, A. (2021). Structural genomics and the Protein Data Bank. The Journal of biological chemistry, 296, 100747. https://doi.org/10.1016/j.jbc.2021.100747
PMID: 34056395
Perez-Rodriguez, S., Wulff, T., Voldborg, B. G., Altamirano, C., Trujillo-Roldan, M. A., & Valdez-Cruz, N. A. (2021). Compartmentalized Proteomic Profiling Outlines the Crucial Role of the Classical Secretory Pathway during Recombinant Protein Production in Chinese Hamster Ovary Cells. ACS omega, 6(19), 12439-12458. https://doi.org/10.1021/acsomega.0c06030
PMID: 33938112
Yeo, H. K., Park, T. H., Kim, H. Y., Jang, H., Lee, J., Hwang, G. S., Ryu, S. E., Park, S. H., Song, H. K., Ban, H. S., Yoon, H. J., & Lee, B. I. (2021). Phospholipid transfer function of PTPIP51 at mitochondria-associated ER membranes. EMBO reports, 22(6), e51323. https://doi.org/10.15252/embr.202051323
PMID: 33938619
Sofou, K., Meier, K., Sanderson, L. E., Kaminski, D., Montoliu-Gaya, L., Samuelsson, E., Blomqvist, M., Agholme, L., Gartner, J., Mühlhausen, C., Darin, N., Barakat, T. S., Schlotawa, L., van Ham, T., Asin Cayuela, J., & Sterky, F. H. (2021). Bi-allelic VPS16 variants limit HOPS/CORVET levels and cause a mucopolysaccharidosis-like disease. EMBO molecular medicine, 13(5), e13376. https://doi.org/10.15252/emmm.202013376
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Venkatesan, A., Geng, J., Kandarpa, M., Wijeyesakere, S. J., Bhide, A., Talpaz, M., Pogozheva, I. D., & Raghavan, M. (2021). Mechanism of mutant calreticulin-mediated activation of the thrombopoietin receptor in cancers. The Journal of cell biology, 220(7), e202009179. https://doi.org/10.1083/jcb.202009179
PMID: 33891595
Lusche, D. F., Wessels, D. J., Reis, R. J., Forrest, C. C., Thumann, A. R., & Soll, D. R. (2021). New monoclonal antibodies that recognize an unglycosylated, conserved, extracellular region of CD44 in vitro and in vivo, and can block tumorigenesis. PloS one, 16(4), e0250175. https://doi.org/10.1371/journal.pone.0250175
PMID: 33895137
Mehla, J., Liechti, G., Morgenstein, R. M., Caufield, J. H., Hosseinnia, A., Gagarinova, A., Phanse, S., Goodacre, N., Brockett, M., Sakhawalkar, N., Babu, M., Xiao, R., Montelione, G. T., Vorobiev, S., den Blaauwen, T., Hunt, J. F., & Uetz, P. (2021). ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis. The Journal of biological chemistry, 296, 100700. https://doi.org/10.1016/j.jbc.2021.100700
PMID: 33891945
Fukuda, K., Lu, F., & Qin, J. (2021). Molecular basis for Ras suppressor-1 binding to PINCH-1 in focal adhesion assembly. The Journal of biological chemistry, 296, 100685. https://doi.org/10.1016/j.jbc.2021.100685
PMID: 33936146
Doner, N. M., Seay, D., Mehling, M., Sun, S., Gidda, S. K., Schmitt, K., Braus, G. H., Ischebeck, T., Chapman, K. D., Dyer, J. M., & Mullen, R. T. (2021). Arabidopsis thaliana EARLY RESPONSIVE TO DEHYDRATION 7 Localizes to Lipid Droplets via Its Senescence Domain. Frontiers in plant science, 12, 658961. https://doi.org/10.3389/fpls.2021.658961
PMID: 33744969
Bhandari, B. K., Lim, C. S., & Gardner, P. P. (2021). TISIGNER.com: web services for improving recombinant protein production. Nucleic acids research, 49(W1), W654-W661. https://doi.org/10.1093/nar/gkab175
PMID: 33730587
Ramesh, G., Jarzembowski, L., Schwarz, Y., Poth, V., Konrad, M., Knapp, M. L., Schwar, G., Lauer, A. A., Grimm, M., Alansary, D., Bruns, D., & Niemeyer, B. A. (2021). A short isoform of STIM1 confers frequency-dependent synaptic enhancement. Cell reports, 34(11), 108844. https://doi.org/10.1016/j.celrep.2021.108844
PMID: 33723373
Yin, K., Lee, J., Liu, Z., Kim, H., Martin, D. R., Wu, D., Liu, M., & Xue, X. (2021). Mitophagy protein PINK1 suppresses colon tumor growth by metabolic reprogramming via p53 activation and reducing acetyl-CoA production. Cell death and differentiation, 28(8), 2421-2435. https://doi.org/10.1038/s41418-021-00760-9
PMID: 33731716
Bang, S., Donnelly, C. R., Luo, X., Toro-Moreno, M., Tao, X., Wang, Z., Chandra, S., Bortsov, A. V., Derbyshire, E. R., & Ji, R. R. (2021). Activation of GPR37 in macrophages confers protection against infection-induced sepsis and pain-like behaviour in mice. Nature communications, 12(1), 1704. https://doi.org/10.1038/s41467-021-21940-8
PMID: 33809384
Clarke, J., Thibault, P. A., Salapa, H. E., Kim, D. E., Hutchinson, C., & Levin, M. C. (2021). Multiple Sclerosis-Associated hnRNPA1 Mutations Alter hnRNPA1 Dynamics and Influence Stress Granule Formation. International journal of molecular sciences, 22(6), 2909. https://doi.org/10.3390/ijms22062909
PMID: 33707306
Yang, W. H., Lin, C. C., Wu, J., Chao, P. Y., Chen, K., Chen, P. H., & Chi, J. T. (2021). The Hippo Pathway Effector YAP Promotes Ferroptosis via the E3 Ligase SKP2. Molecular cancer research : MCR, 19(6), 1005-1014. https://doi.org/10.1158/1541-7786.MCR-20-0534
PMID: 33705388
Lu, Y. N., Kavianpour, S., Zhang, T., Zhang, X., Nguyen, D., Thombre, R., He, L., & Wang, J. (2021). MARK2 phosphorylates eIF2α in response to proteotoxic stress. PLoS biology, 19(3), e3001096. https://doi.org/10.1371/journal.pbio.3001096
PMID: 33661412
Song, L., Song, M., Camargo, M. C., Van Duine, J., Williams, S., Chung, Y., Kim, K. M., Lissowska, J., Sivins, A., Gao, W., Karthikeyan, K., Park, J., Leja, M., Cohen, J. I., LaBaer, J., Qiu, J., & Rabkin, C. S. (2021). Identification of anti-Epstein-Barr virus (EBV) antibody signature in EBV-associated gastric carcinoma. Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association, 24(4), 858-867. https://doi.org/10.1007/s10120-021-01170-z
PMID: 33650635
Kummari, R., Dutta, S., Patil, S., Mudrale, S. P., & Bose, K. (2021). Elucidating the role of GRIM-19 as a substrate and allosteric activator of pro-apoptotic serine protease HtrA2. The Biochemical journal, 478(6), 1241-1259. https://doi.org/10.1042/BCJ20200923
PMID: 33649598
Peng, G. E., Pessino, V., Huang, B., & von Zastrow, M. (2021). Spatial decoding of endosomal cAMP signals by a metastable cytoplasmic PKA network. Nature chemical biology, 17(5), 558-566. https://doi.org/10.1038/s41589-021-00747-0
PMID: 33651979
Weinreb, J. T., Ghazale, N., Pradhan, K., Gupta, V., Potts, K. S., Tricomi, B., Daniels, N. J., Padgett, R. A., De Oliveira, S., Verma, A., & Bowman, T. V. (2021). Excessive R-loops trigger an inflammatory cascade leading to increased HSPC production. Developmental cell, 56(5), 627-640.e5. https://doi.org/10.1016/j.devcel.2021.02.006
PMID: 33632871
Feng, Y., Pathria, G., Heynen-Genel, S., Jackson, M., James, B., Yin, J., Scott, D. A., & Ronai, Z. A. (2021). Identification and Characterization of IMD-0354 as a Glutamine Carrier Protein Inhibitor in Melanoma. Molecular cancer therapeutics, 20(5), 816-832. https://doi.org/10.1158/1535-7163.MCT-20-0354
PMID: 33640981
Machas, M., Kurgan, G., Abed, O. A., Shapiro, A., Wang, X., & Nielsen, D. (2021). Characterizing Escherichia coli's transcriptional response to different styrene exposure modes reveals novel toxicity and tolerance insights. Journal of industrial microbiology & biotechnology, 48(1-2), kuab019. https://doi.org/10.1093/jimb/kuab019
PMID: 33635925
Bruce, J. W., Bracken, M., Evans, E., Sherer, N., & Ahlquist, P. (2021). ZBTB2 represses HIV-1 transcription and is regulated by HIV-1 Vpr and cellular DNA damage responses. PLoS pathogens, 17(2), e1009364. https://doi.org/10.1371/journal.ppat.1009364
PMID: 33626345
Wang, H., Hou, W., Perera, A., Bettler, C., Beach, J. R., Ding, X., Li, J., Denning, M. F., Dhanarajan, A., Cotler, S. J., Joyce, C., Yin, J., Ahmed, F., Roberts, L. R., & Qiu, W. (2021). Targeting EphA2 suppresses hepatocellular carcinoma initiation and progression by dual inhibition of JAK1/STAT3 and AKT signaling. Cell reports, 34(8), 108765. https://doi.org/10.1016/j.celrep.2021.108765
PMID: 33313679
Carr, H. S., Chang, J. T., & Frost, J. A. (2021). The PDZ Domain Protein SYNJ2BP Regulates GRK-Dependent Sst2A Phosphorylation and Downstream MAPK Signaling. Endocrinology, 162(2), bqaa229. https://doi.org/10.1210/endocr/bqaa229
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Kwiatkowski, S., Bozko, M., Zarod, M., Witecka, A., Kocdemir, K., Jagielski, A. K., & Drozak, J. (2022). Recharacterization of the Mammalian Cytosolic Type 2 (R)-β-Hydroxybutyrate Dehydrogenase (BDH2) as 4-Oxo-L-Proline Reductase (EC 1.1.1.104). The Journal of biological chemistry, 101708. Advance online publication. https://doi.org/10.1016/j.jbc.2022.101708
PMID: 33622117
Palazzo, A., & Marsano, R. M. (2021). Transposable elements: a jump toward the future of expression vectors. Critical reviews in biotechnology, 41(5), 792-808. https://doi.org/10.1080/07388551.2021.1888067
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Manica, G., Ghenea, S., Munteanu, C., Martin, E. C., Butnaru, C., Surleac, M., Chiritoiu, G. N., Alexandru, P. R., Petrescu, A. J., & Petrescu, S. M. (2021). EDEM3 Domains Cooperate to Perform Its Overall Cell Functioning. International journal of molecular sciences, 22(4), 2172. https://doi.org/10.3390/ijms22042172
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Ranaghan, M. J., Li, J. J., Laprise, D. M., & Garvie, C. W. (2021). Assessing optimal: inequalities in codon optimization algorithms. BMC biology, 19(1), 36. https://doi.org/10.1186/s12915-021-00968-8
PMID: 33665624
Kirby, I. T., Sanderson, D. J., & Cohen, M. S. (2021). PASTA: PARP activity screening and inhibitor testing assay. STAR protocols, 2(1), 100344. https://doi.org/10.1016/j.xpro.2021.100344
PMID: 33669244
Kim, H. J., & Kim, J. (2021). OTUD6A Is an Aurora Kinase A-Specific Deubiquitinase. International journal of molecular sciences, 22(4), 1936. https://doi.org/10.3390/ijms22041936
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Caster, D. J., Korte, E. A., Merchant, M. L., Klein, J. B., Barati, M. T., Joglekar, A., Wilkey, D. W., Coventry, S., Hata, J., Rovin, B. H., Harley, J. B., Namjou-Khales, B., McLeish, K. R., & Powell, D. W. (2021). Patients with Proliferative Lupus Nephritis Have Autoantibodies That React to Moesin and Demonstrate Increased Glomerular Moesin Expression. Journal of clinical medicine, 10(4), 793. https://doi.org/10.3390/jcm10040793
PMID: 33617877
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Mukhopadhyay, S., Goswami, D., Adiseshaiah, P. P., Burgan, W., Yi, M., Guerin, T. M., Kozlov, S. V., Nissley, D. V., & McCormick, F. (2020). Undermining Glutaminolysis Bolsters Chemotherapy While NRF2 Promotes Chemoresistance in KRAS-Driven Pancreatic Cancers. Cancer research, 80(8), 1630-1643. https://doi.org/10.1158/0008-5472.CAN-19-1363
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Acharya, S., Dutta, S., & Bose, K. (2020). A distinct concerted mechanism of structural dynamism defines activity of human serine protease HtrA3. The Biochemical journal, 477(2), 407-429. https://doi.org/10.1042/BCJ20190706
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Babagana, M., Kichina, J. V., Slabodkin, H., Johnson, S., Maslov, A., Brown, L., Attwood, K., Nikiforov, M. A., & Kandel, E. S. (2020). The role of polo-like kinase 3 in the response of BRAF-mutant cells to targeted anticancer therapies. Molecular carcinogenesis, 59(1), 5-14. https://doi.org/10.1002/mc.23123
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Darvish, H., Azcona, L. J., Tafakhori, A., Mesias, R., Ahmadifard, A., Sanchez, E., Habibi, A., Alehabib, E., Johari, A. H., Emamalizadeh, B., Jamali, F., Chapi, M., Jamshidi, J., Kajiwara, Y., & Paisan-Ruiz, C. (2020). Phenotypic and genotypic characterization of families with complex intellectual disability identified pathogenic genetic variations in known and novel disease genes. Scientific reports, 10(1), 968. https://doi.org/10.1038/s41598-020-57929-4
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Spadotto, V., Giambruno, R., Massignani, E., Mihailovich, M., Maniaci, M., Patuzzo, F., Ghini, F., Nicassio, F., & Bonaldi, T. (2020). PRMT1-mediated methylation of the microprocessor-associated proteins regulates microRNA biogenesis. Nucleic acids research, 48(1), 96-115. https://doi.org/10.1093/nar/gkz1051
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Kosti, A., Du, L., Shivram, H., Qiao, M., Burns, S., Garcia, J. G., Pertsemlidis, A., Iyer, V. R., Kokovay, E., & Penalva, L. (2020). ELF4 Is a Target of miR-124 and Promotes Neuroblastoma Proliferation and Undifferentiated State. Molecular cancer research : MCR, 18(1), 68-78. https://doi.org/10.1158/1541-7786.MCR-19-0187
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Jia, J., Claude-Taupin, A., Gu, Y., Choi, S. W., Peters, R., Bissa, B., Mudd, M. H., Allers, L., Pallikkuth, S., Lidke, K. A., Salemi, M., Phinney, B., Mari, M., Reggiori, F., & Deretic, V. (2020). Galectin-3 Coordinates a Cellular System for Lysosomal Repair and Removal. Developmental cell, 52(1), 69-87.e8. https://doi.org/10.1016/j.devcel.2019.10.025
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Lauenstein, J. U., Udgata, A., Bartram, A., De Sutter, D., Fisher, D. I., Halabi, S., Eyckerman, S., & Gay, N. J. (2019). Phosphorylation of the multifunctional signal transducer B-cell adaptor protein (BCAP) promotes recruitment of multiple SH2/SH3 proteins including GRB2. The Journal of biological chemistry, 294(52), 19852-19861. https://doi.org/10.1074/jbc.RA119.009931
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Khan, S., Zhang, X., Lv, D., Zhang, Q., He, Y., Zhang, P., Liu, X., Thummuri, D., Yuan, Y., Wiegand, J. S., Pei, J., Zhang, W., Sharma, A., McCurdy, C. R., Kuruvilla, V. M., Baran, N., Ferrando, A. A., Kim, Y. M., Rogojina, A., Houghton, P. J., ? Zhou, D. (2019). A selective BCL-XL PROTAC degrader achieves safe and potent antitumor activity. Nature medicine, 25(12), 1938-1947. https://doi.org/10.1038/s41591-019-0668-z
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Kanthaswamy, S., Oldt, R. F., Said, R., Grijalva, J., Falak, A., Jensen, A., Vizor, C., Houghton, P., Bunlungsup, S., Malaivijitnond, S., & Smith, D. G. (2019). Partial sequence analyses of exon 7 of the ABO locus of cynomolgus (Macaca fascicularis) and rhesus (M. mulatta) macaques: Indeterminate phenotypes show the presence of the O blood group. HLA, 94(6), 482-492. https://doi.org/10.1111/tan.13675
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Rogers, M. S., & Lipscomb, J. D. (2019). Salicylate 5-Hydroxylase: Intermediates in Aromatic Hydroxylation by a Rieske Monooxygenase. Biochemistry, 58(52), 5305-5319. https://doi.org/10.1021/acs.biochem.9b00292
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Hart, P. C., Kenny, H. A., Grassl, N., Watters, K. M., Litchfield, L. M., Coscia, F., Blaženović, I., Ploetzky, L., Fiehn, O., Mann, M., Lengyel, E., & Romero, I. L. (2019). Mesothelial Cell HIF1α Expression Is Metabolically Downregulated by Metformin to Prevent Oncogenic Tumor-Stromal Crosstalk. Cell reports, 29(12), 4086-4098.e6. https://doi.org/10.1016/j.celrep.2019.11.079
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Helassa, N., Nugues, C., Rajamanoharan, D., Burgoyne, R. D., & Haynes, L. P. (2019). A centrosome-localized calcium signal is essential for mammalian cell mitosis. FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 33(12), 14602-14610. https://doi.org/10.1096/fj.201901662R
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Maraldi, T., Beretti, F., Anselmi, L., Franchin, C., Arrigoni, G., Braglia, L., Mandrioli, J., Vinceti, M., & Marmiroli, S. (2019). Influence of selenium on the emergence of neuro tubule defects in a neuron-like cell line and its implications for amyotrophic lateral sclerosis. Neurotoxicology, 75, 209-220. https://doi.org/10.1016/j.neuro.2019.09.015
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Yang, Y., He, J., Chen, J., Lin, L., Liu, Y., Zhou, C., Su, Y., & Wei, H. (2019). Dihydroartemisinin Sensitizes Mutant p53 (R248Q)-Expressing Hepatocellular Carcinoma Cells to Doxorubicin by Inhibiting P-gp Expression. BioMed research international, 2019, 8207056. https://doi.org/10.1155/2019/8207056
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Donkervoort, S., Sabouny, R., Yun, P., Gauquelin, L., Chao, K. R., Hu, Y., Al Khatib, I., Töpf, A., Mohassel, P., Cummings, B. B., Kaur, R., Saade, D., Moore, S. A., Waddell, L. B., Farrar, M. A., Goodrich, J. K., Uapinyoying, P., Chan, S., Javed, A., Leach, M. E., ? Shutt, T. E. (2019). MSTO1 mutations cause mtDNA depletion, manifesting as muscular dystrophy with cerebellar involvement. Acta neuropathologica, 138(6), 1013-1031. https://doi.org/10.1007/s00401-019-02059-z
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Camacho-Encina, M., Balboa-Barreiro, V., Rego-Perez, I., Picchi, F., VanDuin, J., Qiu, J., Fuentes, M., Oreiro, N., LaBaer, J., Ruiz-Romero, C., & Blanco, F. J. (2019). Discovery of an autoantibody signature for the early diagnosis of knee osteoarthritis: data from the Osteoarthritis Initiative. Annals of the rheumatic diseases, 78(12), 1699-1705. https://doi.org/10.1136/annrheumdis-2019-215325
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Perl, A. L., O'Connor, C. M., Fa, P., Mayca Pozo, F., Zhang, J., Zhang, Y., & Narla, G. (2019). Protein phosphatase 2A controls ongoing DNA replication by binding to and regulating cell division cycle 45 (CDC45). The Journal of biological chemistry, 294(45), 17043-17059. https://doi.org/10.1074/jbc.RA119.010432
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Herring, S. K., Moon, H. J., Rawal, P., Chhibber, A., & Zhao, L. (2019). Brain clusterin protein isoforms and mitochondrial localization. eLife, 8, e48255. https://doi.org/10.7554/eLife.48255
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Gu, Y., Princely Abudu, Y., Kumar, S., Bissa, B., Choi, S. W., Jia, J., Lazarou, M., Eskelinen, E. L., Johansen, T., & Deretic, V. (2019). Mammalian Atg8 proteins regulate lysosome and autolysosome biogenesis through SNAREs. The EMBO journal, 38(22), e101994. https://doi.org/10.15252/embj.2019101994
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Chellam Gayathri, S., & Manoj, N. (2019). Structural insights into the mechanism of internal aldimine formation and catalytic loop dynamics in an archaeal Group II decarboxylase. Journal of structural biology, 208 (2), 137-151. https://doi.org/10.1016/j.jsb.2019.08.009
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Schlachter, C. R., Klapper, V., Radford, T., & Chruszcz, M. (2019). Comparative studies of Aspergillus fumigatus 2-methylcitrate synthase and human citrate synthase. Biological chemistry, 400(12), 1567-1581. https://doi.org/10.1515/hsz-2019-0106
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Goklany, S., Lu, P., Godeshala, S., Hall, A., Garrett-Mayer, E., Voelkel-Johnson, C., & Rege, K. (2019). Delivery of TRAIL-expressing plasmid DNA to cancer cells in vitro and in vivo using aminoglycoside-derived polymers. Journal of materials chemistry. B, 7(44), 7014-7025. https://doi.org/10.1039/c9tb01286a
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Larson, G. P., Tran, V., Yú, S., Caì, Y., Higgins, C. A., Smith, D. M., Baker, S. F., Radoshitzky, S. R., Kuhn, J. H., & Mehle, A. (2019). EPS8 Facilitates Uncoating of Influenza A Virus. Cell reports, 29(8), 2175-2183.e4. https://doi.org/10.1016/j.celrep.2019.10.064
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Standage-Beier, K., Tekel, S. J., Brookhouser, N., Schwarz, G., Nguyen, T., Wang, X., & Brafman, D. A. (2019). A transient reporter for editing enrichment (TREE) in human cells. Nucleic acids research, 47(19), e120. https://doi.org/10.1093/nar/gkz713
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Zhu, J., Berisa, M., Schworer, S., Qin, W., Cross, J. R., & Thompson, C. B. (2019). Transsulfuration Activity Can Support Cell Growth upon Extracellular Cysteine Limitation. Cell metabolism, 30(5), 865-876.e5. https://doi.org/10.1016/j.cmet.2019.09.009
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Cai, D., Wang, J., Gao, B., Li, J., Wu, F., Zou, J. X., Xu, J., Jiang, Y., Zou, H., Huang, Z., Borowsky, A. D., Bold, R. J., Lara, P. N., Li, J. J., Chen, X., Lam, K. S., To, K. F., Kung, H. J., Fiehn, O., Zhao, R., ? Chen, H. W. (2019). RORΓ is a targetable master regulator of cholesterol biosynthesis in a cancer subtype. Nature communications, 10(1), 4621. https://doi.org/10.1038/s41467-019-12529-3
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Vierra, N. C., Kirmiz, M., van der List, D., Santana, L. F., & Trimmer, J. S. (2019). Kv2.1 mediates spatial and functional coupling of L-type calcium channels and ryanodine receptors in mammalian neurons. eLife, 8, e49953. https://doi.org/10.7554/eLife.49953
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Tang, S., Hicks, N. D., Cheng, Y. S., Silva, A., Fortune, S. M., & Sacchettini, J. C. (2019). Structural and functional insight into the Mycobacterium tuberculosis protein PrpR reveals a novel type of transcription factor. Nucleic acids research, 47(18), 9934-9949. https://doi.org/10.1093/nar/gkz724
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Beaumatin, F., O'Prey, J., Barthet, V., Zunino, B., Parvy, J. P., Bachmann, A. M., O'Prey, M., Kania, E., Gonzalez, P. S., Macintosh, R., Lao, L. Y., Nixon, C., Lopez, J., Long, J. S., Tait, S., & Ryan, K. M. (2019). mTORC1 Activation Requires DRAM-1 by Facilitating Lysosomal Amino Acid Efflux. Molecular cell, 76(1), 163-176.e8. https://doi.org/10.1016/j.molcel.2019.07.021
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Festa, F., & Labaer, J. (2019). Kinase Inhibitor Screening In Self-assembled Human Protein Microarrays. Journal of visualized experiments : JoVE, (152), 10.3791/59886. https://doi.org/10.3791/59886
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Mohapatra, S. B., & Manoj, N. (2019). Structure of an α-glucuronidase in complex with Co2+ and citrate provides insights into the mechanism and substrate recognition in the family 4 glycosyl hydrolases. Biochemical and biophysical research communications, 518(2), 197-203. https://doi.org/10.1016/j.bbrc.2019.08.030
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Marbaix, A. Y., Chehade, G., Noël, G., Morsomme, P., Vertommen, D., Bommer, G. T., & Van Schaftingen, E. (2019). Pyridoxamine-phosphate oxidases and pyridoxamine-phosphate oxidase-related proteins catalyze the oxidation of 6-NAD(P)H to NAD(P). The Biochemical journal, 476(20), 3033-3052. https://doi.org/10.1042/BCJ20190602
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Shen, L., Zhang, J., Lee, H., Batista, M. T., & Johnston, S. A. (2019). RNA Transcription and Splicing Errors as a Source of Cancer Frameshift Neoantigens for Vaccines. Scientific reports, 9(1), 14184. https://doi.org/10.1038/s41598-019-50738-4
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Xu, Q., Biancalana, M., Grant, J. C., Chiu, H. J., Jaroszewski, L., Knuth, M. W., Lesley, S. A., Godzik, A., Elsliger, M. A., Deacon, A. M., & Wilson, I. A. (2019). Structures of single-layer β-sheet proteins evolved from β-hairpin repeats. Protein science : a publication of the Protein Society, 28(9), 1676-1689. https://doi.org/10.1002/pro.3683
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Elman, J. S., Ni, T. K., Mengwasser, K. E., Jin, D., Wronski, A., Elledge, S. J., & Kuperwasser, C. (2019). Identification of FUBP1 as a Long Tail Cancer Driver and Widespread Regulator of Tumor Suppressor and Oncogene Alternative Splicing. Cell reports, 28(13), 3435-3449.e5. https://doi.org/10.1016/j.celrep.2019.08.060
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Geng, J., & Raghavan, M. (2019). CD8αα homodimers function as a coreceptor for KIR3DL1. Proceedings of the National Academy of Sciences of the United States of America, 116(36), 17951-17956. https://doi.org/10.1073/pnas.1905943116
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Huang, M. S., Lin, W. C., Chang, J. H., Cheng, C. H., Wang, H. Y., & Mou, K. Y. (2019). The cysteine-free single mutant C32S of APEX2 is a highly expressed and active fusion tag for proximity labeling applications. Protein science : a publication of the Protein Society, 28(9), 1703-1712. https://doi.org/10.1002/pro.3685
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Yang, W. H., Ding, C. C., Sun, T., Rupprecht, G., Lin, C. C., Hsu, D., & Chi, J. T. (2019). The Hippo Pathway Effector TAZ Regulates Ferroptosis in Renal Cell Carcinoma. Cell reports, 28(10), 2501-2508.e4. https://doi.org/10.1016/j.celrep.2019.07.107
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Elman, J. S., Ni, T. K., Mengwasser, K. E., Jin, D., Wronski, A., Elledge, S. J., & Kuperwasser, C. (2019). Identification of FUBP1 as a Long Tail Cancer Driver and Widespread Regulator of Tumor Suppressor and Oncogene Alternative Splicing. Cell reports, 28(13), 3435-3449.e5. https://doi.org/10.1016/j.celrep.2019.08.060
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Souza, S. A., Kurohara, D. T., Dabalos, C. L., & Ng, H. L. (2019). G Protein-Coupled Estrogen Receptor Production Using an Escherichia coli Cell-Free Expression System. Current protocols in protein science, 97(1), e88. https://doi.org/10.1002/cpps.88
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Garranzo-Asensio, M., Guzmán-Aránguez, A., Povés, C., Fernández-Aceñero, M. J., Montero-Calle, A., Ceron, M. Á., Fernandez-Diez, S., Rodríguez, N., Gómez de Cedrón, M., Ramírez de Molina, A., Domínguez, G., & Barderas, R. (2019). The specific seroreactivity to ΔNp73 isoforms shows higher diagnostic ability in colorectal cancer patients than the canonical p73 protein. Scientific reports, 9(1), 13547. https://doi.org/10.1038/s41598-019-49960-x
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Bushell, S. R., Pike, A., Falzone, M. E., Rorsman, N., Ta, C. M., Corey, R. A., Newport, T. D., Christianson, J. C., Scofano, L. F., Shintre, C. A., Tessitore, A., Chu, A., Wang, Q., Shrestha, L., Mukhopadhyay, S., Love, J. D., Burgess-Brown, N. A., Sitsapesan, R., Stansfeld, P. J., Huiskonen, J. T., ... Carpenter, E. P. (2019). The structural basis of lipid scrambling and inactivation in the endoplasmic reticulum scramblase TMEM16K. Nature communications, 10(1), 3956. https://doi.org/10.1038/s41467-019-11753-1
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Ortiz, M. V., Ahmed, S., Burns, M., Henssen, A. G., Hollmann, T. J., MacArthur, I., Gunasekera, S., Gaewsky, L., Bradwin, G., Ryan, J., Letai, A., He, Y., Naranjo, A., Chi, Y. Y., LaQuaglia, M., Heaton, T., Cifani, P., Dome, J. S., Gadd, S., Perlman, E., ? Kentsis, A. (2019). Prohibitin is a prognostic marker and therapeutic target to block chemotherapy resistance in Wilms' tumor. JCI insight, 4(15), e127098. https://doi.org/10.1172/jci.insight.127098
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Zhu, F., Feng, M., Sinha, R., Murphy, M. P., Luo, F., Kao, K. S., Szade, K., Seita, J., & Weissman, I. L. (2019). The GABA receptor GABRR1 is expressed on and functional in hematopoietic stem cells and megakaryocyte progenitors. Proceedings of the National Academy of Sciences of the United States of America, 116(37), 18416-18422. https://doi.org/10.1073/pnas.1906251116
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Yu, X., Zhang, Y., Wu, B., Kurie, J. M., & Pertsemlidis, A. (2019). The miR-195 Axis Regulates Chemoresistance through TUBB and Lung Cancer Progression through BIRC5. Molecular therapy oncolytics, 14, 288-298. https://doi.org/10.1016/j.omto.2019.07.004
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Standage-Beier, K., Brookhouser, N., Balachandran, P., Zhang, Q., Brafman, D. A., & Wang, X. (2019). RNA-Guided Recombinase-Cas9 Fusion Targets Genomic DNA Deletion and Integration. The CRISPR journal, 2(4), 209-222. https://doi.org/10.1089/crispr.2019.0013
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Kasitinon, S. Y., Eskiocak, U., Martin, M., Bezwada, D., Khivansara, V., Tasdogan, A., Zhao, Z., Mathews, T., Aurora, A. B., & Morrison, S. J. (2019). TRPML1 Promotes Protein Homeostasis in Melanoma Cells by Negatively Regulating MAPK and mTORC1 Signaling. Cell reports, 28(9), 2293-2305.e9. https://doi.org/10.1016/j.celrep.2019.07.086
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Hanley, T., Yin, R., Mac, J., Tan, W., & Anvari, B. (2019). Functionalized erythrocyte-derived optical nanoparticles to target ephrin-B2 ligands. Journal of biomedical optics, 24(8), 1-9. https://doi.org/10.1117/1.JBO.24.8.085002
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Kurgan, G., Sievert, C., Flores, A., Schneider, A., Billings, T., Panyon, L., Morris, C., Taylor, E., Kurgan, L., Cartwright, R., & Wang, X. (2019). Parallel experimental evolution reveals a novel repressive control of GalP on xylose fermentation in Escherichia coli. Biotechnology and bioengineering, 116(8), 2074-2086. https://doi.org/10.1002/bit.27004
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Tang, X., McMullen, T., & Brindley, D. N. (2019). Increasing the low lipid phosphate phosphatase 1 activity in breast cancer cells decreases transcription by AP-1 and expressions of matrix metalloproteinases and cyclin D1/D3. Theranostics, 9(21), 6129-6142. https://doi.org/10.7150/thno.37094
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Ruiz, M., Cuillerier, A., Daneault, C., Deschênes, S., Frayne, I. R., Bouchard, B., Forest, A., Legault, J. T., LSFC Consortium, Vaz, F. M., Rioux, J. D., Burelle, Y., & Des Rosiers, C. (2019). Lipidomics unveils lipid dyshomeostasis and low circulating plasmalogens as biomarkers in a monogenic mitochondrial disorder. JCI insight, 4(14), e123231. https://doi.org/10.1172/jci.insight.123231
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Bearrows, S. C., Bauchle, C. J., Becker, M., Haldeman, J. M., Swaminathan, S., & Stephens, S. B. (2019). Chromogranin B regulates early-stage insulin granule trafficking from the Golgi in pancreatic islet β-cells. Journal of cell science, 132(13), jcs231373. https://doi.org/10.1242/jcs.231373
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Stanford, K. R., Hadley, S. H., Barannikov, I., Ajmo, J. M., Bahia, P. K., & Taylor-Clark, T. E. (2019). Antimycin A-induced mitochondrial dysfunction activates vagal sensory neurons via ROS-dependent activation of TRPA1 and ROS-independent activation of TRPV1. Brain research, 1715, 94-105. https://doi.org/10.1016/j.brainres.2019.03.029
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Yoo, W., Cho, E. B., Kim, S., & Yoon, J. B. (2019). The E3 ubiquitin ligase MARCH2 regulates ERGIC3-dependent trafficking of secretory proteins. The Journal of biological chemistry, 294(28), 10900-10912. https://doi.org/10.1074/jbc.RA119.007435
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Jeyarajah, M. J., Jaju Bhattad, G., Kops, B. F., & Renaud, S. J. (2019). Syndecan-4 regulates extravillous trophoblast migration by coordinating protein kinase C activation. Scientific reports, 9(1), 10175. https://doi.org/10.1038/s41598-019-46599-6
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Wang, C., Jiang, S., Zhang, L., Li, D., Liang, J., Narita, Y., Hou, I., Zhong, Q., Gewurz, B. E., Teng, M., & Zhao, B. (2019). TAF Family Proteins and MEF2C Are Essential for Epstein-Barr Virus Super-Enhancer Activity. Journal of virology, 93(16), e00513-19. https://doi.org/10.1128/JVI.00513-19
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Vekariya, U., Saxena, R., Singh, P., Rawat, K., Kumar, B., Kumari, S., Agnihotri, S. K., Kaur, S., Sachan, R., Nazir, A., Bhadauria, S., Sachdev, M., & Tripathi, R. K. (2018). HIV-1 Nef-POTEE; A novel interaction modulates macrophage dissemination via mTORC2 signaling pathway. Life sciences, 214, 158-166. https://doi.org/10.1016/j.lfs.2018.10.068
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Pizzute, T., He, F., Zhang, X. B., & Pei, M. (2018). Impact of Wnt signals on human intervertebral disc cell regeneration. Journal of orthopaedic research : official publication of the Orthopaedic Research Society, 36(12), 3196-3207. https://doi.org/10.1002/jor.24115
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Brenner, N., Mentzer, A. J., Butt, J., Michel, A., Prager, K., Brozy, J., Weiβbrich, B., Aiello, A. E., Meier, H., Breuer, J., Almond, R., Allen, N., Pawlita, M., & Waterboer, T. (2018). Validation of Multiplex Serology detecting human herpesviruses 1-5. PloS one, 13(12), e0209379. https://doi.org/10.1371/journal.pone.0209379
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Olthoff, J. T., Lindsay, A., Abo-Zahrah, R., Baltgalvis, K. A., Patrinostro, X., Belanto, J. J., Yu, D. Y., Perrin, B. J., Garry, D. J., Rodney, G. G., Lowe, D. A., & Ervasti, J. M. (2018). Loss of peroxiredoxin-2 exacerbates eccentric contraction-induced force loss in dystrophin-deficient muscle. Nature communications, 9(1), 5104. https://doi.org/10.1038/s41467-018-07639-3
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Ting, C. H., Liu, Y. C., Lyu, P. C., & Chen, J. Y. (2018). Nile Tilapia Derived Antimicrobial Peptide TP4 Exerts Antineoplastic Activity Through Microtubule Disruption. Marine drugs, 16(12), 462. https://doi.org/10.3390/md16120462
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Zhang, J., Shen, L., & Johnston, S. A. (2018). Using Frameshift Peptide Arrays for Cancer Neo-Antigens Screening. Scientific reports, 8(1), 17366. https://doi.org/10.1038/s41598-018-35673-0
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Wu, J., Qin, W., Wang, Y., Sadik, A., Liu, J., Wang, Y., Song, P., Wang, X., Sun, K., Zeng, J., & Wang, L. (2018). SPDEF is overexpressed in gastric cancer and triggers cell proliferation by forming a positive regulation loop with FoxM1. Journal of cellular biochemistry, 119(11), 9042-9054. https://doi.org/10.1002/jcb.27161
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Peled, M., Dragovich, M. A., Adam, K., Strazza, M., Tocheva, A. S., Vega, I. E., & Mor, A. (2018). EF Hand Domain Family Member D2 Is Required for T Cell Cytotoxicity. Journal of immunology (Baltimore, Md. : 1950), 201(9), 2824-2831. https://doi.org/10.4049/jimmunol.1800839
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Ahmed, F., & Hristova, K. (2018). Dimerization of the Trk receptors in the plasma membrane: effects of their cognate ligands. The Biochemical journal, 475(22), 3669-3685. https://doi.org/10.1042/BCJ20180637
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Baronas, V. A., Yang, R. Y., Morales, L. C., Sipione, S., & Kurata, H. T. (2018). Slc7a5 regulates Kv1.2 channels and modifies functional outcomes of epilepsy-linked channel mutations. Nature communications, 9(1), 4417. https://doi.org/10.1038/s41467-018-06859-x
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Kosmidis, S., Polyzos, A., Harvey, L., Youssef, M., Denny, C. A., Dranovsky, A., & Kandel, E. R. (2018). RbAp48 Protein Is a Critical Component of GPR158/OCN Signaling and Ameliorates Age-Related Memory Loss. Cell reports, 25(4), 959-973.e6. https://doi.org/10.1016/j.celrep.2018.09.077
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Bouchard, J. J., Otero, J. H., Scott, D. C., Szulc, E., Martin, E. W., Sabri, N., Granata, D., Marzahn, M. R., Lindorff-Larsen, K., Salvatella, X., Schulman, B. A., & Mittag, T. (2018). Cancer Mutations of the Tumor Suppressor SPOP Disrupt the Formation of Active, Phase-Separated Compartments. Molecular cell, 72(1), 19-36.e8. https://doi.org/10.1016/j.molcel.2018.08.027
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Whelan, A. O., Flick-Smith, H. C., Homan, J., Shen, Z. T., Carpenter, Z., Khoshkenar, P., Abraham, A., Walker, N. J., Levitz, S. M., Ostroff, G. R., & Oyston, P. (2018). Protection induced by a Francisella tularensis subunit vaccine delivered by glucan particles. PloS one, 13(10), e0200213. https://doi.org/10.1371/journal.pone.0200213
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Brock, J. R., Donmez, A. A., Beilstein, M. A., & Olsen, K. M. (2018). Phylogenetics of Camelina Crantz. (Brassicaceae) and insights on the origin of gold-of-pleasure (Camelina sativa). Molecular phylogenetics and evolution, 127, 834-842. https://doi.org/10.1016/j.ympev.2018.06.031
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Zhao, K., Shen, C., Li, L., Wu, H., Xing, G., Dong, Z., Jing, H., Chen, W., Zhang, H., Tan, Z., Pan, J., Xiong, L., Wang, H., Cui, W., Sun, X. D., Li, S., Huang, X., Xiong, W. C., & Mei, L. (2018). Sarcoglycan Alpha Mitigates Neuromuscular Junction Decline in Aged Mice by Stabilizing LRP4. The Journal of neuroscience : the official journal of the Society for Neuroscience, 38(41), 8860-8873. https://doi.org/10.1523/JNEUROSCI.0860-18.2018
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Lountos, G. T., Raran-Kurussi, S., Zhao, B. M., Dyas, B. K., Burke, T. R., Jr, Ulrich, R. G., & Waugh, D. S. (2018). High-resolution crystal structures of the D1 and D2 domains of protein tyrosine phosphatase epsilon for structure-based drug design. Acta crystallographica. Section D, Structural biology, 74(Pt 10), 1015-1026. https://doi.org/10.1107/S2059798318011919
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Sethuraman, A., Brown, M., Krutilina, R., Wu, Z. H., Seagroves, T. N., Pfeffer, L. M., & Fan, M. (2018). BHLHE40 confers a pro-survival and pro-metastatic phenotype to breast cancer cells by modulating HBEGF secretion. Breast cancer research : BCR, 20(1), 117. https://doi.org/10.1186/s13058-018-1046-3
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Burgess, E. J., Hoyt, L. R., Randall, M. J., Mank, M. M., Bivona, J. J., 3rd, Eisenhauer, P. L., Botten, J. W., Ballif, B. A., Lam, Y. W., Wargo, M. J., Boyson, J. E., Ather, J. L., & Poynter, M. E. (2018). Bacterial Lipoproteins Constitute the TLR2-Stimulating Activity of Serum Amyloid A. Journal of immunology (Baltimore, Md. : 1950), 201(8), 2377-2384. https://doi.org/10.4049/jimmunol.1800503
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Scott, C. C., Vossio, S., Rougemont, J., & Gruenberg, J. (2018). TFAP2 transcription factors are regulators of lipid droplet biogenesis. eLife, 7, e36330. https://doi.org/10.7554/eLife.36330
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Coscia, F., Lengyel, E., Duraiswamy, J., Ashcroft, B., Bassani-Sternberg, M., Wierer, M., Johnson, A., Wroblewski, K., Montag, A., Yamada, S. D., Lopez-Méndez, B., Nilsson, J., Mund, A., Mann, M., & Curtis, M. (2018). Multi-level Proteomics Identifies CT45 as a Chemosensitivity Mediator and Immunotherapy Target in Ovarian Cancer. Cell, 175(1), 159-170.e16. https://doi.org/10.1016/j.cell.2018.08.065
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Baker, S. F., Ledwith, M. P., & Mehle, A. (2018). Differential Splicing of ANP32A in Birds Alters Its Ability to Stimulate RNA Synthesis by Restricted Influenza Polymerase. Cell reports, 24(10), 2581-2588.e4. https://doi.org/10.1016/j.celrep.2018.08.012
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Li, J., Griffith, W. P., Davis, I., Shin, I., Wang, J., Li, F., Wang, Y., Wherritt, D. J., & Liu, A. (2018). Cleavage of a carbon-fluorine bond by an engineered cysteine dioxygenase. Nature chemical biology, 14(9), 853-860. https://doi.org/10.1038/s41589-018-0085-5
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Wozniak, K. L., Phelps, W. A., Tembo, M., Lee, M. T., & Carlson, A. E. (2018). The TMEM16A channel mediates the fast polyspermy block in Xenopus laevis. The Journal of general physiology, 150(9), 1249-1259. https://doi.org/10.1085/jgp.201812071
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Cajigas, I., Chakraborty, A., Swyter, K. R., Luo, H., Bastidas, M., Nigro, M., Morris, E. R., Chen, S., VanGompel, M., Leib, D., Kohtz, S. J., Martina, M., Koh, S., Ay, F., & Kohtz, J. D. (2018). The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain. Molecular cell, 71(6), 956-972.e9. https://doi.org/10.1016/j.molcel.2018.07.024
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Schuelein, R., Spencer, H., Dagley, L. F., Li, P. F., Luo, L., Stow, J. L., Abraham, G., Naderer, T., Gomez-Valero, L., Buchrieser, C., Sugimoto, C., Yamagishi, J., Webb, A. I., Pasricha, S., & Hartland, E. L. (2018). Targeting of RNA Polymerase II by a nuclear Legionella pneumophila Dot/Icm effector SnpL. Cellular microbiology, 20(9), e12852. https://doi.org/10.1111/cmi.12852
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Verlekar, D., Wei, S. J., Cho, H., Yang, S., & Kang, M. H. (2018). Ceramide synthase-6 confers resistance to chemotherapy by binding to CD95/Fas in T-cell acute lymphoblastic leukemia. Cell death & disease, 9 (9), 925. https://doi.org/10.1038/s41419-018-0964-4
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Tiralongo, J., Cooper, O., Litfin, T., Yang, Y., King, R., Zhan, J., Zhao, H., Bovin, N., Day, C. J., & Zhou, Y. (2018). YesU from Bacillus subtilis preferentially binds fucosylated glycans. Scientific reports, 8(1), 13139. https://doi.org/10.1038/s41598-018-31241-8
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Sapkota, H., Wasiak, E., Daum, J. R., & Gorbsky, G. J. (2018). Multiple determinants and consequences of cohesion fatigue in mammalian cells. Molecular biology of the cell, 29(15), 1811-1824. https://doi.org/10.1091/mbc.E18-05-0315
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Viktorova, E. G., Nchoutmboube, J. A., Ford-Siltz, L. A., Iverson, E., & Belov, G. A. (2018). Phospholipid synthesis fueled by lipid droplets drives the structural development of poliovirus replication organelles. PLoS pathogens, 14(8), e1007280. https://doi.org/10.1371/journal.ppat.1007280
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Li, N., Zhang, Y., Sidlauskas, K., Ellis, M., Evans, I., Frankel, P., Lau, J., El-Hassan, T., Guglielmi, L., Broni, J., Richard-Loendt, A., & Brandner, S. (2018). Inhibition of GPR158 by microRNA-449a suppresses neural lineage of glioma stem/progenitor cells and correlates with higher glioma grades. Oncogene, 37(31), 4313-4333. https://doi.org/10.1038/s41388-018-0277-1
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Daer, R., Barrett, C. M., Melendez, E. L., Wu, J., Tekel, S. J., Xu, J., Dennison, B., Muller, R., & Haynes, K. A. (2018). Characterization of diverse homoserine lactone synthases in Escherichia coli. PloS one, 13(8), e0202294. https://doi.org/10.1371/journal.pone.0202294
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Tan, Y., Jin, C., Ma, W., Hu, Y., Tanasa, B., Oh, S., Gamliel, A., Ma, Q., Yao, L., Zhang, J., Ohgi, K., Liu, W., Aggarwal, A. K., & Rosenfeld, M. G. (2018). Dismissal of RNA Polymerase II Underlies a Large Ligand-Induced Enhancer Decommissioning Program. Molecular cell, 71(4), 526-539.e8. https://doi.org/10.1016/j.molcel.2018.07.039
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Huang, W., Peng, Y., Kiselar, J., Zhao, X., Albaqami, A., Mendez, D., Chen, Y., Chakravarthy, S., Gupta, S., Ralston, C., Kao, H. Y., Chance, M. R., & Yang, S. (2018). Multidomain architecture of estrogen receptor reveals interfacial cross-talk between its DNA-binding and ligand-binding domains. Nature communications, 9(1), 3520. https://doi.org/10.1038/s41467-018-06034-2
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Penn, B. H., Netter, Z., Johnson, J. R., Von Dollen, J., Jang, G. M., Johnson, T., Ohol, Y. M., Maher, C., Bell, S. L., Geiger, K., Golovkine, G., Du, X., Choi, A., Parry, T., Mohapatra, B. C., Storck, M. D., Band, H., Chen, C., Jäger, S., Shales, M., ? Krogan, N. J. (2018). An Mtb-Human Protein-Protein Interaction Map Identifies a Switch between Host Antiviral and Antibacterial Responses. Molecular cell, 71(4), 637-648.e5. https://doi.org/10.1016/j.molcel.2018.07.010
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Lu, H., Tran, L., Park, Y., Chen, I., Lan, J., Xie, Y., & Semenza, G. L. (2018). Reciprocal Regulation of DUSP9 and DUSP16 Expression by HIF1 Controls ERK and p38 MAP Kinase Activity and Mediates Chemotherapy-Induced Breast Cancer Stem Cell Enrichment. Cancer research, 78(15), 4191-4202. https://doi.org/10.1158/0008-5472.CAN-18-0270
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Mintmier, B., McGarry, J. M., Sparacino-Watkins, C. E., Sallmen, J., Fischer-Schrader, K., Magalon, A., McCormick, J. R., Stolz, J. F., Schwarz, G., Bain, D. J., & Basu, P. (2018). Molecular cloning, expression and biochemical characterization of periplasmic nitrate reductase from Campylobacter jejuni. FEMS microbiology letters, 365(16), fny151. https://doi.org/10.1093/femsle/fny151
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Sanchez, E., Azcona, L. J., & Paisan-Ruiz, C. (2018). Pla2g6 Deficiency in Zebrafish Leads to Dopaminergic Cell Death, Axonal Degeneration, Increased β-Synuclein Expression, and Defects in Brain Functions and Pathways. Molecular neurobiology, 55(8), 6734-6754. https://doi.org/10.1007/s12035-017-0846-2
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van den Bosch, T., Tan, K., Joachimiak, A., & Welte, C. U. (2018). Functional Profiling and Crystal Structures of Isothiocyanate Hydrolases Found in Gut-Associated and Plant-Pathogenic Bacteria. Applied and environmental microbiology, 84(14), e00478-18. https://doi.org/10.1128/AEM.00478-18
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Noguchi, K., Dincman, T. A., Dalton, A. C., Howley, B. V., McCall, B. J., Mohanty, B. K., & Howe, P. H. (2018). Interleukin-like EMT inducer (ILEI) promotes melanoma invasiveness and is transcriptionally up-regulated by upstream stimulatory factor-1 (USF-1). The Journal of biological chemistry, 293(29), 11401-11414. https://doi.org/10.1074/jbc.RA118.003616
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Huang, Y. H., Klingbeil, O., He, X. Y., Wu, X. S., Arun, G., Lu, B., Somerville, T., Milazzo, J. P., Wilkinson, J. E., Demerdash, O. E., Spector, D. L., Egeblad, M., Shi, J., & Vakoc, C. R. (2018). POU2F3 is a master regulator of a tuft cell-like variant of small cell lung cancer. Genes & development, 32(13-14), 915-928. https://doi.org/10.1101/gad.314815.118
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Arias-Mireles, B. H., de Rozieres, C. M., Ly, K., & Joseph, S. (2018). RNA Modulates the Interaction between Influenza A Virus NS1 and Human PABP1. Biochemistry, 57(26), 3590-3598. https://doi.org/10.1021/acs.biochem.8b00218
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Roos, A., Dhruv, H. D., Peng, S., Inge, L. J., Tuncali, S., Pineda, M., Millard, N., Mayo, Z., Eschbacher, J. M., Loftus, J. C., Winkles, J. A., & Tran, N. L. (2018). EGFRvIII-Stat5 Signaling Enhances Glioblastoma Cell Migration and Survival. Molecular cancer research : MCR, 16(7), 1185-1195. https://doi.org/10.1158/1541-7786.MCR-18-0125
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Miettinen, H. M., Gripentrog, J. M., Lord, C. I., & Nagy, J. O. (2018). CD177-mediated nanoparticle targeting of human and mouse neutrophils. PloS one, 13(7), e0200444. https://doi.org/10.1371/journal.pone.0200444
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Vogel, K. R., Ainslie, G. R., Walters, D. C., McConnell, A., Dhamne, S. C., Rotenberg, A., Roullet, J. B., & Gibson, K. M. (2018). Succinic semialdehyde dehydrogenase deficiency, a disorder of GABA metabolism: an update on pharmacological and enzyme-replacement therapeutic strategies. Journal of inherited metabolic disease, 41(4), 699-708. https://doi.org/10.1007/s10545-018-0153-8
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Riegler-Berket, L., Leitmeier, A., Aschauer, P., Dreveny, I., & Oberer, M. (2018). Identification of lipases with activity towards monoacylglycerol by criterion of conserved cap architectures. Biochimica et biophysica acta. Molecular and cell biology of lipids, 1863(7), 679-687. https://doi.org/10.1016/j.bbalip.2018.03.009
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Basson, M. D., Wang, Q., Chaturvedi, L. S., More, S., Vomhof-DeKrey, E. E., Al-Marsoummi, S., Sun, K., Kuhn, L. A., Kovalenko, P., & Kiupel, M. (2018). Schlafen 12 Interaction with SerpinB12 and Deubiquitylases Drives Human Enterocyte Differentiation. Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology, 48(3), 1274-1290. https://doi.org/10.1159/000492019
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Goblirsch, B. R., Arachea, B. T., Councell, D. J., & Wiener, M. C. (2018). Phosphoramidon inhibits the integral membrane protein zinc metalloprotease ZMPSTE24. Acta crystallographica. Section D, Structural biology, 74(Pt 8), 739-747. https://doi.org/10.1107/S2059798318003431
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Odokonyero, D., McMillan, A. W., Ramagopal, U. A., Toro, R., Truong, D. P., Zhu, M., Lopez, M. S., Somiari, B., Herman, M., Aziz, A., Bonanno, J. B., Hull, K. G., Burley, S. K., Romo, D., Almo, S. C., & Glasner, M. E. (2018). Comparison of Alicyclobacillus acidocaldarius o-Succinylbenzoate Synthase to Its Promiscuous N-Succinylamino Acid Racemase/ o-Succinylbenzoate Synthase Relatives. Biochemistry, 57(26), 3676-3689. https://doi.org/10.1021/acs.biochem.8b00088
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Wang, J., Molday, L. L., Hii, T., Coleman, J. A., Wen, T., Andersen, J. P., & Molday, R. S. (2018). Proteomic Analysis and Functional Characterization of P4-ATPase Phospholipid Flippases from Murine Tissues. Scientific reports, 8(1), 10795. https://doi.org/10.1038/s41598-018-29108-z
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Davis, I., Yang, Y., Wherritt, D., & Liu, A. (2018). Reassignment of the human aldehyde dehydrogenase ALDH8A1 (ALDH12) to the kynurenine pathway in tryptophan catabolism. The Journal of biological chemistry, 293(25), 9594-9603. https://doi.org/10.1074/jbc.RA118.003320
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Mills, C. L., Garg, R., Lee, J. S., Tian, L., Suciu, A., Cooperman, G. D., Beuning, P. J., & Ondrechen, M. J. (2018). Functional classification of protein structures by local structure matching in graph representation. Protein science : a publication of the Protein Society, 27(6), 1125-1135. https://doi.org/10.1002/pro.3416
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Pinarbasi, E. S., Karamyshev, A. L., Tikhonova, E. B., Wu, I. H., Hudson, H., & Thomas, P. J. (2018). Pathogenic Signal Sequence Mutations in Progranulin Disrupt SRP Interactions Required for mRNA Stability. Cell reports, 23(10), 2844-2851. https://doi.org/10.1016/j.celrep.2018.05.003
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Esquivel-Elizondo, S., Maldonado, J., & Krajmalnik-Brown, R. (2018). Anaerobic carbon monoxide metabolism by Pleomorphomonas carboxyditropha sp. nov., a new mesophilic hydrogenogenic carboxydotroph. FEMS microbiology ecology, 94(6), 10.1093/femsec/fiy056. https://doi.org/10.1093/femsec/fiy056
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Xu, H., Bai, X., Yu, S., Liu, Q., Pestell, R. G., & Wu, K. (2018). MAT1 correlates with molecular subtypes and predicts poor survival in breast cancer. Chinese journal of cancer research = Chung-kuo yen cheng yen chiu, 30(3), 351-363. https://doi.org/10.21147/j.issn.1000-9604.2018.03.07
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White, P. J., McGarrah, R. W., Grimsrud, P. A., Tso, S. C., Yang, W. H., Haldeman, J. M., Grenier-Larouche, T., An, J., Lapworth, A. L., Astapova, I., Hannou, S. A., George, T., Arlotto, M., Olson, L. B., Lai, M., Zhang, G. F., Ilkayeva, O., Herman, M. A., Wynn, R. M., Chuang, D. T., ? Newgard, C. B. (2018). The BCKDH Kinase and Phosphatase Integrate BCAA and Lipid Metabolism via Regulation of ATP-Citrate Lyase. Cell metabolism, 27(6), 1281-1293.e7. https://doi.org/10.1016/j.cmet.2018.04.015
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Cho, E. B., Yoo, W., Yoon, S. K., & Yoon, J. B. (2018). β-dystroglycan is regulated by a balance between WWP1-mediated degradation and protection from WWP1 by dystrophin and utrophin. Biochimica et biophysica acta. Molecular basis of disease, 1864(6 Pt A), 2199-2213. https://doi.org/10.1016/j.bbadis.2018.04.001
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Dronamraju, R., Hepperla, A. J., Shibata, Y., Adams, A. T., Magnuson, T., Davis, I. J., & Strahl, B. D. (2018). Spt6 Association with RNA Polymerase II Directs mRNA Turnover During Transcription. Molecular cell, 70(6), 1054-1066.e4. https://doi.org/10.1016/j.molcel.2018.05.020
PMID: 29463842
Bagati, A., Bianchi-Smiraglia, A., Moparthy, S., Kolesnikova, K., Fink, E. E., Kolesnikova, M., Roll, M. V., Jowdy, P., Wolff, D. W., Polechetti, A., Yun, D. H., Lipchick, B. C., Paul, L. M., Wrazen, B., Moparthy, K., Mudambi, S., Morozevich, G. E., Georgieva, S. G., Wang, J., Shafirstein, G., ... Nikiforov, M. A. (2018). FOXQ1 controls the induced differentiation of melanocytic cells. Cell death and differentiation, 25(6), 1040-1049. https://doi.org/10.1038/s41418-018-0066-y
PMID: 29928062
Navas, T., Pfister, T. D., Colantonio, S., Aziz, A., Dieckman, L., Saul, R. G., Kaczmarczyk, J., Borgel, S., Alcoser, S. Y., Hollingshead, M. G., Lee, Y. H., Bottaro, D. P., Hiltke, T., Whiteley, G., Takebe, N., Kinders, R. J., Parchment, R. E., Tomaszewski, J. E., & Doroshow, J. H. (2018). Novel antibody reagents for characterization of drug- and tumor microenvironment-induced changes in epithelial-mesenchymal transition and cancer stem cells. PloS one, 13(6), e0199361. https://doi.org/10.1371/journal.pone.0199361
PMID: 29802247
Diplas, B. H., He, X., Brosnan-Cashman, J. A., Liu, H., Chen, L. H., Wang, Z., Moure, C. J., Killela, P. J., Loriaux, D. B., Lipp, E. S., Greer, P. K., Yang, R., Rizzo, A. J., Rodriguez, F. J., Friedman, A. H., Friedman, H. S., Wang, S., He, Y., McLendon, R. E., Bigner, D. D., ? Yan, H. (2018). The genomic landscape of TERT promoter wildtype-IDH wildtype glioblastoma. Nature communications, 9(1), 2087. https://doi.org/10.1038/s41467-018-04448-6
PMID: 29648791
Li, B. X., Chen, J., Chao, B., David, L. L., & Xiao, X. (2018). Anticancer Pyrroloquinazoline LBL1 Targets Nuclear Lamins. ACS chemical biology, 13(5), 1380-1387. https://doi.org/10.1021/acschembio.8b00266
PMID: 29514927
Huang, E. Y., To, M., Tran, E., Dionisio, L., Cho, H. J., Baney, K., Pataki, C. I., & Olzmann, J. A. (2018). A VCP inhibitor substrate trapping approach (VISTA) enables proteomic profiling of endogenous ERAD substrates. Molecular biology of the cell, 29(9), 1021-1030. https://doi.org/10.1091/mbc.E17-08-0514
PMID: 29718972
Morales, Y., Olsen, K. J., Bulcher, J. M., & Johnson, S. J. (2018). Structure of frequency-interacting RNA helicase from Neurospora crassa reveals high flexibility in a domain critical for circadian rhythm and RNA surveillance. PloS one, 13(5), e0196642. https://doi.org/10.1371/journal.pone.0196642
PMID: 29765358
Vinuesa, P., Ochoa-Sánchez, L. E., & Contreras-Moreira, B. (2018). GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus Stenotrophomonas. Frontiers in microbiology, 9, 771. https://doi.org/10.3389/fmicb.2018.00771
PMID: 29752409
Stopschinski, B. E., Holmes, B. B., Miller, G. M., Manon, V. A., Vaquer-Alicea, J., Prueitt, W. L., Hsieh-Wilson, L. C., & Diamond, M. I. (2018). Specific glycosaminoglycan chain length and sulfation patterns are required for cell uptake of tau versus α-synuclein and β-amyloid aggregates. The Journal of biological chemistry, 293(27), 10826-10840. https://doi.org/10.1074/jbc.RA117.000378
PMID: 29307802
Radha, R., Arumugam, N., & Gummadi, S. N. (2018). Glutaminase free l-asparaginase from Vibrio cholerae: Heterologous expression, purification and biochemical characterization. International journal of biological macromolecules, 111, 129-138. https://doi.org/10.1016/j.ijbiomac.2017.12.165
PMID: 29930736
Heidari, P., Kunawudhi, A., Martinez-Quintanilla, J., Szretter, A., Shah, K., & Mahmood, U. (2018). Somatostatin receptor type 2 as a radiotheranostic PET reporter gene for oncologic interventions. Theranostics, 8(12), 3380-3391. https://doi.org/10.7150/thno.24017
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Naik, A., Al-Yahyaee, A., Abdullah, N., Sam, J. E., Al-Zeheimi, N., Yaish, M. W., & Adham, S. A. (2018). Neuropilin-1 promotes the oncogenic Tenascin-C/integrin β3 pathway and modulates chemoresistance in breast cancer cells. BMC cancer, 18(1), 533. https://doi.org/10.1186/s12885-018-4446-y
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Trastoy, B., Klontz, E., Orwenyo, J., Marina, A., Wang, L. X., Sundberg, E. J., & Guerin, M. E. (2018). Structural basis for the recognition of complex-type N-glycans by Endoglycosidase S. Nature communications, 9(1), 1874. https://doi.org/10.1038/s41467-018-04300-x
PMID: 29531365
Knowlton, J. J., Fernández de Castro, I., Ashbrook, A. W., Gestaut, D. R., Zamora, P. F., Bauer, J. A., Forrest, J. C., Frydman, J., Risco, C., & Dermody, T. S. (2018). The TRiC chaperonin controls reovirus replication through outer-capsid folding. Nature microbiology, 3(4), 481-493. https://doi.org/10.1038/s41564-018-0122-x
PMID: 29662124
Ding, S., Diep, J., Feng, N., Ren, L., Li, B., Ooi, Y. S., Wang, X., Brulois, K. F., Yasukawa, L. L., Li, X., Kuo, C. J., Solomon, D. A., Carette, J. E., & Greenberg, H. B. (2018). STAG2 deficiency induces interferon responses via cGAS-STING pathway and restricts virus infection. Nature communications, 9(1), 1485. https://doi.org/10.1038/s41467-018-03782-z
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Zhang, X. Y., Zhao, T. Y., Li, Y. Y., Xiang, H. Y., Dong, S. W., Zhang, Z. Y., Wang, Y., Li, D. W., Yu, J. L., & Han, C. G. (2018). The Conserved Proline18 in the Polerovirus P3a Is Important for Brassica Yellows Virus Systemic Infection. Frontiers in microbiology, 9, 613. https://doi.org/10.3389/fmicb.2018.00613
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Heitmeier, M. R., Payne, M. A., Weinheimer, C., Kovacs, A., Hresko, R. C., Jay, P. Y., & Hruz, P. W. (2018). Metabolic and Cardiac Adaptation to Chronic Pharmacologic Blockade of Facilitative Glucose Transport in Murine Dilated Cardiomyopathy and Myocardial Ischemia. Scientific reports, 8(1), 6475. https://doi.org/10.1038/s41598-018-24867-1
PMID: 29398709
Rauf, F., Festa, F., Park, J. G., Magee, M., Eaton, S., Rinaldi, C., Betanzos, C. M., Gonzalez-Malerva, L., & LaBaer, J. (2018). Ibrutinib inhibition of ERBB4 reduces cell growth in a WNT5A-dependent manner. Oncogene, 37(17), 2237-2250. https://doi.org/10.1038/s41388-017-0079-x
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Gunaratne, G. S., Yahya, N. A., Dosa, P. I., & Marchant, J. S. (2018). Activation of host transient receptor potential (TRP) channels by praziquantel stereoisomers. PLoS neglected tropical diseases, 12(4), e0006420. https://doi.org/10.1371/journal.pntd.0006420
PMID: 29337190
Marco, P., Kozuleva, M., Eilenberg, H., Mazor, Y., Gimeson, P., Kanygin, A., Redding, K., Weiner, I., & Yacoby, I. (2018). Binding of ferredoxin to algal photosystem I involves a single binding site and is composed of two thermodynamically distinct events. Biochimica et biophysica acta. Bioenergetics, 1859(4), 234-243. https://doi.org/10.1016/j.bbabio.2018.01.001
PMID: 28924186
Zhou, Y., Dong, F., Lanz, T. A., Reinhart, V., Li, M., Liu, L., Zou, J., Xi, H. S., & Mao, Y. (2018). Interactome analysis reveals ZNF804A, a schizophrenia risk gene, as a novel component of protein translational machinery critical for embryonic neurodevelopment. Molecular psychiatry, 23(4), 952-962. https://doi.org/10.1038/mp.2017.166
PMID: 29715548
Park, J. W., Lee, C. M., Cheng, J. S., & Morgan, E. T. (2018). Posttranslational regulation of CYP2J2 by nitric oxide. Free radical biology & medicine, 121, 149-156. https://doi.org/10.1016/j.freeradbiomed.2018.04.576
PMID: 29531224
Lin, C. C., Kitagawa, M., Tang, X., Hou, M. H., Wu, J., Qu, D. C., Srinivas, V., Liu, X., Thompson, J. W., Mathey-Prevot, B., Yao, T. P., Lee, S. H., & Chi, J. T. (2018). CoA synthase regulates mitotic fidelity via CBP-mediated acetylation. Nature communications, 9(1), 1039. https://doi.org/10.1038/s41467-018-03422-6
PMID: 29337693
Palanirajan, S. K., Sivagnanam, U., Murugan, S., & Gummadi, S. N. (2018). In vitro reconstitution and biochemical characterization of human phospholipid scramblase 3: phospholipid specificity and metal ion binding studies. Biological chemistry, 399(4), 361-374. https://doi.org/10.1515/hsz-2017-0309
PMID: 29497057
Bai, M., Vozdek, R., Hnizda, A., Jiang, C., Wang, B., Kuchar, L., Li, T., Zhang, Y., Wood, C., Feng, L., Dang, Y., & Ma, D. K. (2018). Conserved roles of C. elegans and human MANFs in sulfatide binding and cytoprotection. Nature communications, 9(1), 897. https://doi.org/10.1038/s41467-018-03355-0
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Yamagishi, Y., & Abe, H. (2018). Actin assembly mediated by a nucleation promoting factor WASH is involved in MTOC-TMA formation during Xenopus oocyte maturation. Cytoskeleton (Hoboken, N.J.), 75(3), 131-143. https://doi.org/10.1002/cm.21428
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Howley, B. V., Link, L. A., Grelet, S., El-Sabban, M., & Howe, P. H. (2018). A CREB3-regulated ER-Golgi trafficking signature promotes metastatic progression in breast cancer. Oncogene, 37(10), 1308-1325. https://doi.org/10.1038/s41388-017-0023-0
PMID: 29634317
Xiong, J., Pecchi, V. G., Qui, M., Ivanov, A. A., Mo, X., Niu, Q., Chen, X., Fu, H., & Du, Y. (2018). Development of a Time-Resolved Fluorescence Resonance Energy Transfer Ultrahigh-Throughput Screening Assay for Targeting the NSD3 and MYC Interaction. Assay and drug development technologies, 16(2), 96-106. https://doi.org/10.1089/adt.2017.835
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Sørensen, D. M., Holemans, T., van Veen, S., Martin, S., Arslan, T., Haagendahl, I. W., Holen, H. W., Hamouda, N. N., Eggermont, J., Palmgren, M., & Vangheluwe, P. (2018). Parkinson disease related ATP13A2 evolved early in animal evolution. PloS one, 13(3), e0193228. https://doi.org/10.1371/journal.pone.0193228
PMID: 29092903
Wiley, S. Z., Sriram, K., Liang, W., Chang, S. E., French, R., McCann, T., Sicklick, J., Nishihara, H., Lowy, A. M., & Insel, P. A. (2018). GPR68, a proton-sensing GPCR, mediates interaction of cancer-associated fibroblasts and cancer cells. FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 32(3), 1170-1183. https://doi.org/10.1096/fj.201700834R
29580262
Paz, H., Joo, E. J., Chou, C. H., Fei, F., Mayo, K. H., Abdel-Azim, H., Ghazarian, H., Groffen, J., & Heisterkamp, N. (2018). Treatment of B-cell precursor acute lymphoblastic leukemia with the Galectin-1 inhibitor PTX008. Journal of experimental & clinical cancer research : CR, 37(1), 67. https://doi.org/10.1186/s13046-018-0721-7
PMID: 29228333
Hartill, V. L., van de Hoek, G., Patel, M. P., Little, R., Watson, C. M., Berry, I. R., Shoemark, A., Abdelmottaleb, D., Parkes, E., Bacchelli, C., Szymanska, K., Knoers, N. V., Scambler, P. J., Ueffing, M., Boldt, K., Yates, R., Winyard, P. J., Adler, B., Moya, E., Hattingh, L., ? Johnson, C. A. (2018). DNAAF1 links heart laterality with the AAA+ ATPase RUVBL1 and ciliary intraflagellar transport. Human molecular genetics, 27(3), 529-545. https://doi.org/10.1093/hmg/ddx422
PMID: 29212708
Ha, B. H., & Boggon, T. J. (2018). The crystal structure of pseudokinase PEAK1 (Sugen kinase 269) reveals an unusual catalytic cleft and a novel mode of kinase fold dimerization. The Journal of biological chemistry, 293(5), 1642-1650. https://doi.org/10.1074/jbc.RA117.000751
PMID: 29200207
Hill, Z. B., Martinko, A. J., Nguyen, D. P., & Wells, J. A. (2018). Human antibody-based chemically induced dimerizers for cell therapeutic applications. Nature chemical biology, 14(2), 112-117. https://doi.org/10.1038/nchembio.2529
PMID: 28705764
Hammond, J. A., Zhou, L., Lamichhane, R., Chu, H. Y., Millar, D. P., Gerace, L., & Williamson, J. R. (2018). A Survey of DDX21 Activity During Rev/RRE Complex Formation. Journal of molecular biology, 430(4), 537-553. https://doi.org/10.1016/j.jmb.2017.06.023
PMID: 29426933
Allu, P. K., Boggula, Y., Karri, S., Marada, A., Krishnamoorthy, T., & Sepuri, N. (2018). A conserved R type Methionine Sulfoxide Reductase reverses oxidized GrpEL1/Mge1 to regulate Hsp70 chaperone cycle. Scientific reports, 8(1), 2716. https://doi.org/10.1038/s41598-018-21083-9
PMID: 29288958
Nidetz, N. F., Gallagher, T. M., & Wiethoff, C. M. (2018). Inhibition of type I interferon responses by adenovirus serotype-dependent Gas6 binding. Virology, 515, 150-157. https://doi.org/10.1016/j.virol.2017.12.016
PMID: 29515592
Loes, A. N., Bridgham, J. T., & Harms, M. J. (2018). Coevolution of the Toll-Like Receptor 4 Complex with Calgranulins and Lipopolysaccharide. Frontiers in immunology, 9, 304. https://doi.org/10.3389/fimmu.2018.00304
PMID: 29432141
Munro, A. W., McLean, K. J., Grant, J. L., & Makris, T. M. (2018). Structure and function of the cytochrome P450 peroxygenase enzymes. Biochemical Society transactions, 46(1), 183-196. https://doi.org/10.1042/BST20170218
PMID: 29309642
Ming, Q., Roske, Y., Schuetz, A., Walentin, K., Ibraimi, I., Schmidt-Ott, K. M., & Heinemann, U. (2018). Structural basis of gene regulation by the Grainyhead/CP2 transcription factor family. Nucleic acids research, 46(4), 2082-2095. https://doi.org/10.1093/nar/gkx1299
PMID: 29194006
Gavya, S. L., Arora, N., & Ghosh, S. S. (2018). Retention of functional characteristics of glutathione-S-transferase and lactate dehydrogenase-A in fusion protein. Preparative biochemistry & biotechnology, 48(2), 128-135. https://doi.org/10.1080/10826068.2017.1405022
PMID: 29473022
Chuang, Y. M., Pinn, M. L., Karakousis, P. C., & Hung, C. F. (2018). Intranasal Immunization with DnaK Protein Induces Protective Mucosal Immunity against Tuberculosis in CD4-Depleted Mice. Frontiers in cellular and infection microbiology, 8, 31. https://doi.org/10.3389/fcimb.2018.00031
PMID: 29531845
Chang, X., & Hou, Y. (2018). Expression of RecA and cell-penetrating peptide (CPP) fusion protein in bacteria and in mammalian cells. International journal of biochemistry and molecular biology, 9(1), 1-10.
PMID: 29428737
Emanuelle, S., Doblin, M. S., Gooley, P. R., & Gentry, M. S. (2018). The UBA domain of SnRK1 promotes activation and maintains catalytic activity. Biochemical and biophysical research communications, 497(1), 127-132. https://doi.org/10.1016/j.bbrc.2018.02.039
PMID: 29516482
Hansen, D. T., Craciunescu, F. M., Fromme, P., Johnston, S. A., & Sykes, K. F. (2018). Generation of High-Specificity Antibodies against Membrane Proteins Using DNA-Gold Micronanoplexes for Gene Gun Immunization. Current protocols in protein science, 91, 29.20.1-29.20.22. https://doi.org/10.1002/cpps.50
PMID: 29474160
Conway, T. P., Daniels, K. J., Park, Y. N., & Soll, D. R. (2018). Generating a Battery of Monoclonal Antibodies Against Firefly Luciferase for Dot Blot Analysis, Western Blot Analysis, and Immunostaining of Cells in Culture and Paraffin Sections. Monoclonal antibodies in immunodiagnosis and immunotherapy, 37(1), 45-51. https://doi.org/10.1089/mab.2017.0057
PMID: 29117939
Ding, Z., Roos, A., Kloss, J., Dhruv, H., Peng, S., Pirrotte, P., Eschbacher, J. M., Tran, N. L., & Loftus, J. C. (2018). A Novel Signaling Complex between TROY and EGFR Mediates Glioblastoma Cell Invasion. Molecular cancer research : MCR, 16(2), 322-332. https://doi.org/10.1158/1541-7786.MCR-17-0454
PMID: 29124284
Kumar, R., Raman, R., Kotapalli, V., Gowrishankar, S., Pyne, S., Pollack, J. R., & Bashyam, M. D. (2018). Ca2+/nuclear factor of activated T cells signaling is enriched in early-onset rectal tumors devoid of canonical Wnt activation. Journal of molecular medicine (Berlin, Germany), 96(2), 135-146. https://doi.org/10.1007/s00109-017-1607-4
PMID: 29227283
Tamiya, H., Kim, H., Klymenko, O., Kim, H., Feng, Y., Zhang, T., Han, J. Y., Murao, A., Snipas, S. J., Jilaveanu, L., Brown, K., Kluger, H., Zhang, H., Iwai, K., & Ronai, Z. A. (2018). SHARPIN-mediated regulation of protein arginine methyltransferase 5 controls melanoma growth. The Journal of clinical investigation, 128(1), 517-530. https://doi.org/10.1172/JCI95410
PMID: 29382735
Rinkenberger, N., & Schoggins, J. W. (2018). Mucolipin-2 Cation Channel Increases Trafficking Efficiency of Endocytosed Viruses. mBio, 9(1), e02314-17. https://doi.org/10.1128/mBio.02314-17
PMID: 29357389
Lv, D. W., Zhang, K., & Li, R. (2018). Interferon regulatory factor 8 regulates caspase-1 expression to facilitate Epstein-Barr virus reactivation in response to B cell receptor stimulation and chemical induction. PLoS pathogens, 14(1), e1006868. https://doi.org/10.1371/journal.ppat.1006868
PMID: 29316436
Gwinn, D. M., Lee, A. G., Briones-Martin-Del-Campo, M., Conn, C. S., Simpson, D. R., Scott, A. I., Le, A., Cowan, T. M., Ruggero, D., & Sweet-Cordero, E. A. (2018). Oncogenic KRAS Regulates Amino Acid Homeostasis and Asparagine Biosynthesis via ATF4 and Alters Sensitivity to L-Asparaginase. Cancer cell, 33(1), 91-107.e6. https://doi.org/10.1016/j.ccell.2017.12.003
PMID: 29343704
Bachman, A. B., Keramisanou, D., Xu, W., Beebe, K., Moses, M. A., Vasantha Kumar, M. V., Gray, G., Noor, R. E., van der Vaart, A., Neckers, L., & Gelis, I. (2018). Phosphorylation induced cochaperone unfolding promotes kinase recruitment and client class-specific Hsp90 phosphorylation. Nature communications, 9(1), 265. https://doi.org/10.1038/s41467-017-02711-w
PMID: 29186613
Agarwal, S., & Cho, T. Y. (2018). Biochemical and structural characterization of a novel cooperative binding mode by Pit-1 with CATT repeats in the macrophage migration inhibitory factor promoter. Nucleic acids research, 46(2), 929-941. https://doi.org/10.1093/nar/gkx1183
PMID: 29338718
Ballister, E. R., Rodgers, J., Martial, F., & Lucas, R. J. (2018). A live cell assay of GPCR coupling allows identification of optogenetic tools for controlling Go and Gi signaling. BMC biology, 16(1), 10. https://doi.org/10.1186/s12915-017-0475-2
PMID: 29125663
Gandomkar, S., Dennig, A., Dordic, A., Hammerer, L., Pickl, M., Haas, T., Hall, M., & Faber, K. (2018). Biocatalytic Oxidative Cascade for the Conversion of Fatty Acids into α-Ketoacids via Internal H2 O2 Recycling. Angewandte Chemie (International ed. in English), 57(2), 427-430. https://doi.org/10.1002/anie.201710227
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Man, J., Yu, X., Huang, H., Zhou, W., Xiang, C., Huang, H., Miele, L., Liu, Z., Bebek, G., Bao, S., & Yu, J. S. (2018). Hypoxic Induction of Vasorin Regulates Notch1 Turnover to Maintain Glioma Stem-like Cells. Cell stem cell, 22(1), 104-118.e6. https://doi.org/10.1016/j.stem.2017.10.005
PMID: 29104065
O'Banion, C. P., Priestman, M. A., Hughes, R. M., Herring, L. E., Capuzzi, S. J., & Lawrence, D. S. (2018). Design and Profiling of a Subcellular Targeted Optogenetic cAMP-Dependent Protein Kinase. Cell chemical biology, 25(1), 100-109.e8. https://doi.org/10.1016/j.chembiol.2017.09.011
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Wang, Z., Wu, D., Ng, C. F., Teoh, J. Y., Yu, S., Wang, Y., & Chan, F. L. (2018). Nuclear receptor profiling in prostatospheroids and castration-resistant prostate cancer. Endocrine-related cancer, 25(1), 35-50. https://doi.org/10.1530/ERC-17-0280
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Mank, N. J., Pote, S., Majorek, K. A., Arnette, A. K., Klapper, V. G., Hurlburt, B. K., & Chruszcz, M. (2018). Structure of aspartate β-semialdehyde dehydrogenase from Francisella tularensis. Acta crystallographica. Section F, Structural biology communications, 74(Pt 1), 14-22. https://doi.org/10.1107/S2053230X17017241
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Jin, L., Chun, J., Pan, C., Kumar, A., Zhang, G., Ha, Y., Li, D., Alesi, G. N., Kang, Y., Zhou, L., Yu, W. M., Magliocca, K. R., Khuri, F. R., Qu, C. K., Metallo, C., Owonikoko, T. K., & Kang, S. (2018). The PLAG1-GDH1 Axis Promotes Anoikis Resistance and Tumor Metastasis through CamKK2-AMPK Signaling in LKB1-Deficient Lung Cancer. Molecular cell, 69(1), 87-99.e7. https://doi.org/10.1016/j.molcel.2017.11.025
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Yu, X., Noll, R. R., Romero Duenas, B. P., Allgood, S. C., Barker, K., Caplan, J. L., Machner, M. P., LaBaer, J., Qiu, J., & Neunuebel, M. R. (2018). Legionella effector AnkX interacts with host nuclear protein PLEKHN1. BMC microbiology, 18(1), 5. https://doi.org/10.1186/s12866-017-1147-7
Theses and Dissertations using specific plasmids from DNASU
Northeastern University
Kankanamge, L. S. P. (2023). Molecular approaches in identification of cancerous mutations and protein families. Doctoral dissertation, Northeastern University
Arizona State University
Alanis, V. (2022). Secondary Analysis on the Impact of Sleep-Wake Patterns and Feeding Practices in the Gut Microbiome in the First Years of Life Trailed into Toddlerhood. ProQuest Dissertations Publishing
Michigan State University
Hewage, M. & Sirinimal N. (2022). Synthesis of 3-Hydroxypropionic Acid from Acetylenecarboxylic Acid. ProQuest Dissertations Publishing
Arizona State University
Nandi, P. (2022). Cryo-Electron Microscopy Enables Structural Studies of Protein Complexes Relevant to Neurodegeneration. ProQuest Dissertations Publishing
Arizona State University
Grief, D. (2022). Mutant P53-Specific Differential Regulation of YAP1/TAZ Proteins in Promoting Invasion of Mammary Epithelial Cells. ProQuest Dissertations Publishing
Arizona State University
Hickey, K. (2022). Mitochondrial D-Loop Phylogeography of the Northwest Atlantic Porbeagles (Lamna nasus) in Comparison to the Southwest Pacific Porbeagles. ProQuest Dissertations Publishing
University of Kent
Dennis, N. (2022). Investigating the role of mitochondria in regulating cell health and ageing. University of Kent
University of Wisconsin-Madison
Yang, G. (2022). Characterization of a Novel Transcription Factor, Transcription Factor 19 (TCF19), in Diabetes Pathogenesis. ProQuest Dissertations Publishing
Arizona State University
Kapuruge, E. P. (2021). The Impact of ex Vivo Modifications on Protein Interactions. ProQuest Dissertations Publishing
University of Delaware
Meric, G. (2021). Towards Rational Design of Aggregation-Resistant Protein Variants. ProQuest Dissertations Publishing
State University of New York at Stony Brook
Basu, R. (2021). The Interplay between Target Turnover, Residence Time and Post Antibiotic Effect. ProQuest Dissertations Publishing
Wayne State University
Gladyck, S. L. (2021). MNRR1: Understanding the Role of a Novel Mitochondrial-Nuclear Regulator. ProQuest Dissertations Publishing
Arizona State University
Toffoli, S. (2021). Associations between Rapid Infant Weight Gain, Infant Feeding Practice and the Infant Gut Microbiome. ProQuest Dissertations Publishing
Yale University
Rosen, C. E. (2021). Discovery of Host-Microbiota Interactions. ProQuest Dissertations Publishing
University of Lausanne
Evgeniya, T. (2021). Novel insights into direct translocation and endocytosis of cell penetrating peptides. University of Lausanne
Georgia State University
Davis, C. I. (2021). Chemistry of a Dehydrogenase and Di-heme Enzyme Related to Tryptophan Oxidation. ScholarWorks at Georgia State University
Cornell University
Shah, A. S. (2021). From Mechanism to Therapeutics: Deciphering the Roles of a Novel Lipid-Binding Protein in Wnt Signaling and Cancer. ProQuest Dissertations Publishing
Arizona State University
Velarde, K. (2021). Herpes Simplex Virus 1 Amplicon Vectors. ProQuest Dissertations Publishing
Arizona State University
Gogerty, C. (2021). The Role of Stress Granules in Arsenite- and Vaccinia Virus-Induced Necroptosis. ProQuest Dissertations Publishing
Kennesaw State University
Greinke, L. (2021). Designing a Reactive Warhead to Bind and Inhibit Pseudomonas aeruginosa's Periplasmic Protein, Inhibitor of Vertebrate Lysozyme. DigitalCommons at Kennesaw State University
The University of Memphis
Shendy, N. (2020). Epigenetic Regulation of Rel Expression by MAP3K4, CBP, and HDAC6 During Phenotypic Switching. ProQuest Dissertations Publishing
Albert Einstein College of Medicine
Carbonell, A. U. (2020). Novel Roles for ANKS1B in the Pathogenesis of Neurodevelopmental Disorders. ProQuest Dissertations Publishing
Arizona State University
Tang, A. (2020). RNA Aptamer-Based Systems for Pathogen Detection and Biomolecule Synthesis. ProQuest Dissertations Publishing
Arizona State University
Lolley, S. (2020). Microbial Diversity in the Human Gut Microbiota in Relation to Dietary Fiber Consumption of College Freshman at a Southwestern University. ProQuest Dissertations Publishing
University of Alberta
Sanderson, M. R. (2020). Characterization of the Protein Interaction Networks of Necdin and MAGEL2: Insight into How Loss of These Proteins Contributes to Neurodevelopmental Disease. University of Alberta
UC San Francisco
Johnson, I. E. (2020). Discovering how inner nuclear membrane protein, LEM2, orchestrates timely nuclear envelope reformation during open mitosis. eScholarship.org
Arizona State University
Nagaratnam, N. (2020). Structural and Biophysical Studies of Pathological Determinants in Cancer and Infectious Diseases. ProQuest Dissertations Publishing
Albert Einstein College of Medicine
Weinreb, J. T. (2020). Uncovering the Roles of DDX41 in Hematopoiesis. ProQuest Dissertations Publishing
Surana R, Wang S, Xu W, Jablonski SA, Weiner LM (2014) IL4 Limits the Efficacy of Tumor-Targeted Antibody Therapy in a Murine Model. Cancer Immunol Res. 2014 Nov;2(11):1103-12. doi: 10.1158/2326-6066.CIR-14-0103. Epub 2014 Sep 9. PMID: 25204776
HsCD0002235
Karla Camacho-Soto , Javier Castillo-Montoya , Blake Tye , Luca O. Ogunleye , and Indraneel Ghosh (2014) Small Molecule Gated Split-Tyrosine Phosphatases and Orthogonal Split-Tyrosine Kinases. J. Am. Chem. Soc., November 19, 2014. PMID: 25409264
HsCD00003675
HsCD00403679
HsCD00002513
Chen Z-j and Ai H-w (2014). A Highly Responsive and Selective Fluorescent Probe for Imaging Physiological Hydrogen Sulfide. Biochemistry Biochemistry, 2014, 53 (37), pp 5966–5974 PMID: 25141269
HsCD00002251
Ghoshal A and Ghosh SS. (2014) Expression, Purification, and Therapeutic Implications of Recombinant sFRP1. Appl Biochem Biotechnol. 2014 Nov 30. [Epub ahead of print] PMID: 25432334
HsCD00022108
Ham H, Woolery AR, Tracy C, Stenesen D, Krämer H, Orth K. (2014) Unfolded protein response-regulated dFic reversibly AMPylates BiP during endoplasmic reticulum homeostasis. J Biol Chem. 2014 Nov 13. pii: jbc.M114.612515. [Epub ahead of print] PMID: 25395623
Yu X, Woolery AR, Luong P, Hao YH, Grammel M, Westcott N, Park J, Wang J, Bian X, Demirkan G, Hang HC, Orth K, LaBaer J. (2014) Copper-catalyzed azide-alkyne cycloaddition (click chemistry)-based Detection of Global Pathogen-host AMPylation on Self-assembled Human Protein Microarrays. Mol Cell Proteomics. 2014 Nov;13(11):3164-76. doi: 10.1074/mcp.M114.041103. Epub 2014 Jul 29. PMID: 25073739
GTPase clones
Anderson KS, Cramer DW, Sibani S, Wallstrom G, Wong J, Park J, Qiu J, Vitonis A, LaBaer J. (2014) An Autoantibody Signature for the Serologic Detection of Ovarian Cancer. J Proteome Res. 2014 Nov 3. [Epub ahead of print] PMID: 25365139
NAPPA Clones
Wen J, Xiao J, Rahdar M, Choudhury BP, Cui J, Taylor GS, Esko JD, Dixon JE. (2014) Xylose phosphorylation functions as a molecular switch to regulate proteoglycan biosynthesis. Proc Natl Acad Sci U S A. 2014 Oct 20. pii: 201417993. [Epub ahead of print] PMID: 25331875
HsCD00515937
HsCD00295197
Brown LM, Rogers KE, Aroonsakool N, McCammon JA, Insel PA. (2014) Allosteric Inhibition of Epac: COMPUTATIONAL MODELING AND EXPERIMENTAL VALIDATION TO IDENTIFY ALLOSTERIC SITES AND INHIBITORS. J Biol Chem. 2014 Oct 17;289(42):29148-57. doi: 10.1074/jbc.M114.569319. Epub 2014 Sep 2. PMID: 25183009
HsCD00442122
Woolery AR, Yu X, LaBaer J, Orth K. (2014) AMPylation of Rho GTPases subverts multiple host signaling processes. J Biol Chem. 2014 Oct 9. pii: jbc.M114.601310. [Epub ahead of print] PMID: 25301945
GTPase plasmids
Shang J, Huang X, Du Z. (2014) The FP domains of PI31 and Fbxo7 have the same protein fold but very different modes of protein–protein interaction. J Biomol Struct Dyn. 2014 Sep 30:1-11. [Epub ahead of print] PMID: 25266262
HsCD00082371
HsCD00404128
Prados-Rosales R, Carreño LJ, Batista-Gonzalez A, Baena A, Venkataswamy MM, Xu J, Yu X, Wallstrom G, Magee DM, LaBaer J, Achkar JM, Jacobs WR Jr, Chan J, Porcelli SA, Casadevall A. (2014) Mycobacterial Membrane Vesicles Administered Systemically in Mice Induce a Protective Immune Response to Surface Compartments of Mycobacterium tuberculosis. MBio. 2014 Sep 30;5(5). pii: e01921-14. doi: 10.1128/mBio.01921-14. PMID: 25271291
Mycobacterium tuberculosis plasmids
Boswell-Casteel RC, Johnson JM, Duggan KD, Tsutsui Y, Hays FA. (2014) Overproduction and biophysical characterization of human HSP70 proteins. Protein Expr Purif. 2014 Sep 27. pii: S1046-5928(14)00210-1. doi: 10.1016/j.pep.2014.09.013. [Epub ahead of print] PMID: 25266791
HsCD00080058
HsCD00040011
HsCD00041118
Brown LM, Rogers KE, Aroonsakool N, McCammon JA, Insel PA. (2014) Allosteric Inhibition of Epac: Computational Modeling and Experimental Validation to Identify Allosteric Sites and Inhibitors. J Biol Chem. 2014 Sep 2. pii: jbc.M114.569319. [Epub ahead of print] PMID: 25183009
HsCD00442122
Poirier V, Bach H, Av-Gay Y. (2014) Mycobacterium tuberculosis Promotes Anti-Apoptotic Activity of the Macrophage by PtpA-Dependent Dephosphorylation of Host GSK3α. . J Biol Chem. 2014 Sep 3. pii: jbc.M114.582502. [Epub ahead of print] PMID: 25187516
HsCD00077034
Zhou J, Deng Z, Chen Y, Gao Y, Wu D, Zhu G, Li L, Song W, Wang X, Wu K, He D. (2014) Overexpression of FABP7 promotes cell growth and predicts poor prognosis of clear cell renal cell carcinoma. Urol Oncol. 2014 Sep 2. pii: S1078-1439(14)00278-6. doi: 10.1016/j.urolonc.2014.08.001. [Epub ahead of print] PMID: 25192834
HsCD00445349
HsCD00357339
Chen ZJ, Ai HW. (2014) A Highly Responsive and Selective Fluorescent Probe to Image Physiological Hydrogen Sulfide. Biochemistry. 2014 Aug 20. [Epub ahead of print] PMID: 25141269
HsCD00002251
Petrosyan A, Holzapfel MS, Muirhead DE, Cheng PW. (2014) Restoration of Compact Golgi Morphology in Advanced Prostate Cancer Enhances Susceptibility to Galectin-1-induced Apoptosis by Modifying Mucin O-glycan Synthesis. Mol Cancer Res. 2014 Aug 1. pii: molcanres.0291.2014. [Epub ahead of print] PMID: 25086069
HsCD00521134
Satpute-Krishnan P, Ajinkya M, Bhat S, Itakura E, Hegde RS, Lippincott-Schwartz J. (2014) ER Stress-Induced Clearance of Misfolded GPI-Anchored Proteins via the Secretory Pathway. Cell. 2014 Jul 31;158(3):522-33. doi: 10.1016/j.cell.2014.06.026. PMID: 25083867
HsCD00044796
HsCD00042793
Sin C, Li H, Crawford DA. (2014) Transcriptional Regulation by FOXP1, FOXP2, and FOXP4 Dimerization. J Mol Neurosci. 2014 Jul 16. [Epub ahead of print] PMID: 25027557
HsCD00297105
HsCD00079580
Wolter JM, Kotagama K, Pierre-Bez AC, Firago M, Mangone M. (2014) 3'LIFE: a functional assay to detect miRNA targets in high-throughput. Nucleic Acids Res. 2014 Jul 29. pii: gku626. [Epub ahead of print] PMID: 25074381
EvNO00601503
EvNO00601504
Subramonian D, Raghunayakula S, Olsen JV, Beningo KA, Paschen W, Zhang XD. (2014) Analysis of Changes in SUMO-2/3 Modification during Breast Cancer Progression and Metastasis. J Proteome Res. 2014 Jul 29. [Epub ahead of print] PMID: 25072996
HsCD00076329
Yu X, Woolery AR, Luong P, Hao YH, Grammel M, Westcott N, Park J, Wang J, Bian X, Demirkan G, Hang HC, Orth K, LaBaer J. (2014) Click chemistry-based detection of global pathogen-host AMPylation on self-assembled human protein microarrays. Mol Cell Proteomics. 2014 Jul 29. pii: mcp.M114.041103. [Epub ahead of print] PMID: 25073739
NAPPA Clones
Cox N, Pilling D, Gomer RH. (2014) Distinct Fcγ Receptors Mediate the Effect of Serum Amyloid P on Neutrophil Adhesion and Fibrocyte Differentiation. J Immunol. 2014 Jul 14. pii: 1400281. [Epub ahead of print] PMID: 25024390
HsCD00005702
HsCD00042799
Valkevich EM, Sanchez NA, Ge Y, Strieter ER. (2014) Middle-Down Mass Spectrometry Enables Characterization of Branched Ubiquitin Chains. Biochemistry. 2014 Jul 14. [Epub ahead of print] PMID: 25023374
HsCD00356713
Renaudin X, Guervilly JH, Aoufouchi S, Rosselli F. (2014) Proteomic analysis unveils a FANCA-modulated neddylation pathway involved in CXCR5 membrane targeting and cell mobility. J Cell Sci. 2014 Jul 11. pii: jcs.150706. [Epub ahead of print] PMID: 25015289
HsCD00305489
Kirschke E, Goswami D, Southworth D, Griffin PR, Agard DA. (2014) Glucocorticoid Receptor Function Regulated by Coordinated Action of the Hsp90 and Hsp70 Chaperone Cycles. Cell. 2014 Jun 19;157(7):1685-97. doi: 10.1016/j.cell.2014.04.038. PMID: 24949977
HsCD00081592
Kastrati I, Canestrari E, Frasor J. (2014) PHLDA1 expression is controlled by an estrogen receptor-NFκB-miR-181 regulatory loop and is essential for formation of ER+ mammospheres. Oncogene. 2014 Jun 23. doi: 10.1038/onc.2014.180. [Epub ahead of print] PMID: 24954507
HsCD00434827
Bragazzi NL, Spera R, Pechkova E, Nicolini C (2014) NAPPA-Based Nanobiosensors for the Detection of Proteins and of Protein-Protein Interactions Relevant to Cancer. J Carcinog & Mutagen 5:166. doi: 10.4172/2157-2518.1000166
Aretz J, Wamhoff E, Hanske J, Heymann D and Rademacher C. (2014) Computational and experimental prediction of human C-type lectin receptor druggability. Front. Immunol. 5:323. doi:10.3389/fimmu.2014.00323
HsCD00507041
Jarrett SG, Horrell EM, Christian PA, Vanover JC, Boulanger MC, Zou Y, D'Orazio JA. (2014) PKA-Mediated Phosphorylation of ATR Promotes Recruitment of XPA to UV-Induced DNA Damage. Mol Cell. 2014 Jun 19;54(6):999-1011. doi: 10.1016/j.molcel.2014.05.030. PMID: 24950377
HsCD00045284
Schulte T, Löfling J, Mikaelsson C, Kikhney A, Hentrich K, Diamante A, Ebel C, Normark S, Svergun D, Henriques-Normark B, Achour A. (2014) The basic keratin 10-binding domain of the virulence-associated pneumococcal serine-rich protein PsrP adopts a novel MSCRAMM fold. Open Biol. 2014 Jan 15;4:130090. doi: 10.1098/rsob.130090. PMID: 24430336
HsCD00045373
Ryu Y, Hall CP, Reynolds CP, Kang MH. (2014) Caspase-dependent Mcl-1 cleavage and effect of Mcl-1 phosphorylation in ABT-737-induced apoptosis in human acute lymphoblastic leukemia cell lines. Exp Biol Med (Maywood). 2014 Jun 20. pii: 1535370214538745. [Epub ahead of print] PMID: 24951472
HsCD00039084
Yu, X., Bian, X., Throop, A., Song, L., Del Moral, L., Park, J., Seiler, C., Fiacco, M., Steel, J., Hunter, P., Saul, J., Wang, J., Qiu, J., Pipas, J.M., and LaBaer, J. (2014) Exploration of Panviral Proteome: High-Throughput Cloning and Functional Implications in Virus-host Interactions. Theranostics 4(8): 808-822. doi: 10.7150/thno.8255
Brady OA, Zhou X, and Hu F. (2014) Regulated intramembrane proteolysis of the frontotemporal lobar degeneration (FTLD) risk factor,TMEM106B, bySignal Peptide Peptidase-like 2a (SPPL2a). J Biol Chem. 2014 May 28. pii: jbc.M113.515700. [Epub ahead of print] PMID: 24872421
HsCD00021697
Feng J, De Jesus PD, Su V, Han S, Gong D, Wu NC, Tian Y, Li X, Wu TT, Chanda SK, Sun R. (2014) RIOK3 is an adaptor protein required for IRF3-mediated antiviral type I interferon production. J Virol. May 7. [Epub ahead of print] PMID: 24807708
HsCD00038007
Saul J, Petritis B, Sau S, Rauf F, Gaskin M, Ober-Reynolds B, Mineyev I, Magee M, Chaput J, Qiu J, Labaer J. (2014) Development of a full-length human protein production pipeline. Protein Sci. 2014 May 8. doi: 10.1002/pro.2484. [Epub ahead of print] PMID: 24806540
Samasilp P, Lopin K, Chan SA, Ramachandran R, Smith C. (2014) Syndapin 3 Modulates Fusion Pore Expansion in Mouse Neuroendocrine Chromaffin Cells. Am J Physiol Cell Physiol. 2014 Feb 5. [Epub ahead of print] PMID: 24500282
HsCD00045184
Yang Yang, Guan Wang, Xiaolan Huang and Zhihua Dua. (2014) Expression, purification and crystallization of the SKICH domain of human TAX1BP1. Acta Crystallographica Section F Structural Biology Communications
HsCD00300502
Vörös J, Urbanek A, Rautureau GJ, O'Connor M, Fisher HC, Ashcroft AE, Ferguson N. (2014) Large-scale production and structural and biophysical characterizations of the human hepatitis B virus polymerase. J Virol. 2014 Mar;88(5):2584-99. doi: 10.1128/JVI.02575-13. Epub 2013 Dec 18. PMID: 24352439
HsCD00301392
HsCD00045312
Skibinski A, Breindel JL, Prat A, Galván P, Smith E, Rolfs A, Gupta PB, Labaer J, Kuperwasser C. (2014) The Hippo Transducer TAZ Interacts with the SWI/SNF Complex to Regulate Breast Epithelial Lineage Commitment. Cell Rep. 2014 Mar 5. pii: S2211-1247(14)00152-1. doi: 10.1016/j.celrep.2014.02.038. [Epub ahead of print] PMID: 24613358
Transcription Factor Collection
Ito YA, Goping IS, Berry F, Walter MA. (2014) Dysfunction of the stress-responsive FOXC1 transcription factor contributes to the earlier-onset glaucoma observed in Axenfeld-Rieger syndrome patients. Cell Death Dis. 2014 Feb 20;5:e1069. doi: 10.1038/cddis.2014.8. PMID: 24556684
HsCD00044509
Selyunin AS, Reddick LE, Weigele BA, Alto NM. (2014) Selective Protection of an ARF1-GTP Signaling Axis by a Bacterial Scaffold Induces Bidirectional Trafficking Arrest. Cell Rep. 2014 Feb 25. pii: S2211-1247(14)00074-6. doi: 10.1016/j.celrep.2014.01.040. [Epub ahead of print] PMID: 24582959
HsCD00520592
Morizono K, Chen IS. (2014) The role of phosphatidylserine receptors in enveloped virus infection. J Virol. 2014 Jan 29. [Epub ahead of print] PMID: 24478428
HsCD00288806
HsCD00082870
HsCD00350658
HsCD00288629
HsCD00041758
Bose SK, Kim H, Meyer K, Wolins N, Davidson NO, Ray R. (2014) FORKHEAD BOX TRANSCRIPTION FACTOR REGULATION AND LIPID ACCUMULATION BY HEPATITIS C VIRUS. J Virol. 2014 Jan 29. [Epub ahead of print] PMID: 24478438
HsCD00330288
Schulte T, Löfling J, Mikaelsson C, Kikhney A, Hentrich K, Diamante A, Ebel C, Normark S, Svergun D, Henriques-Normark B, Achour A. (2014) The basic keratin 10-binding domain of the virulence-associated pneumococcal serine-rich protein PsrP adopts a novel MSCRAMM fold. Open Biol. Jan 15;4(1):130090. doi: 10.1098/rsob.130090. PMID: 24430336
HsCD00045373
Brodie SA, Li G, El-Kommos A, Kang H, Ramalingam SS, Behera M, Gandhi K, Kowalski J, Sica GL, Khuri FR, Vertino PM, Brandes JC. (2014) Class I HDACs are mediators of smoke-carcinogen induced stabilization of DNMT1 and serve as promising targets for chemoprevention of lung cancer. Cancer Prev Res (Phila). Jan 17. [Epub ahead of print] PMID: 24441677
HsCD00080462
Kincaid RP, Burke JM, Cox JC, de Villiers EM, Sullivan CS. (2013) A Human Torque Teno Virus Encodes a MicroRNA That Inhibits Interferon Signaling. PLoS Pathog. Dec;9(12):e1003818. doi: 10.1371/journal.ppat.1003818. Epub 2013 Dec 19. PMID: 24367263
HsCD00433976
Renaud SJ, Kubota K, Rumi MA, Soares MJ. (2013) The FOS Transcription Factor Family Differentially Controls Trophoblast Migration and Invasion. J Biol Chem. Dec 30. [Epub ahead of print] PMID: 24379408
HsCD00434995
Zhu F, Gamboa M, Farruggio AP, Hippenmeyer S, Tasic B, Schüle B, Chen-Tsai Y, Calos MP. (2013) DICE, an efficient system for iterative genomic editing in human pluripotent stem cells. Nucleic Acids Res. Dec 4. [Epub ahead of print] PMID: 24304893
HsCD00039453
HsCD00001270
Young E, Zheng ZY, Wilkins AD, Jeong HT, Li M, Lichtarge O, Chang EC. (2013) Regulation of Ras localization and cell transformation by evolutionarily conserved palmitoyltransferases. Mol Cell Biol. 2013 Nov 18. [Epub ahead of print] PMID: 24248599
HsCD00295927
Potts MB, Kim HS, Fisher KW, Hu Y, Carrasco YP, Bulut GB, Ou YH, Herrera-Herrera ML, Cubillos F, Mendiratta S, Xiao G, Hofree M, Ideker T, Xie Y, Huang LJ, Lewis RE, MacMillan JB, White MA. (2013) Using functional signature ontology (FUSION) to identify mechanisms of action for natural products. Sci Signal. 2013 Oct 15;6(297):ra90. doi: 10.1126/scisignal.2004657. PMID: 24129700
HsCD00082595
HsCD00043011
Jiyuan Ke, Kaleeckal G. Harikumar, Clara Erice, Chen Chen, Xin Gu, Liren Wang, Naomi Parker, Zhihong Cheng, Wenqing Xu, Bart O. Williams, Karsten Melcher, Laurence J. Miller and H. Eric Xu (2013). Structure and function of Norrin in assembly and activation of a Frizzled 4–Lrp5/6 complex. Genes & Dev. 27: 2305-2319 doi:10.1101/gad.228544.113 PMID: 24186977
HsCD00045716
Berre S, Gaudin R, Cunha de Alencar B, Desdouits M, Chabaud M, Naffakh N, Rabaza-Gairi M, Gobert FX, Jouve M, Benaroch P. (2013) CD36-specific antibodies block release of HIV-1 from infected primary macrophages and its transmission to T cells. J Exp Med. 2013 Oct 21. [Epub ahead of print] PMID: 24145510
HsCD00045106
Goichberg P, Kannappan R, Cimini M, Bai Y, Sanada F, Sorrentino A, Signore S, Kajstura J, Rota M, Anversa P, Leri A. (2013) Age-associated defects in EphA2 signaling impair the migration of human cardiac progenitor cells. Circulation. 2013 Nov 12;128(20):2211-23. doi: 10.1161/CIRCULATIONAHA.113.004698. Epub 2013 Oct 18. PMID: 24141256
HsCD00038225
Plummer JT, Evgrafov OV, Bergman MY, Friez M, Haiman CA, Levitt P, Aldinger KA. (2013) Transcriptional regulation of the MET receptor tyrosine kinase gene by MeCP2 and sex-specific expression in autism and Rett syndrome. Transl Psychiatry. 2013 Oct 22;3:e316. doi: 10.1038/tp.2013.91. PMID: 24150225
HsCD00081627
Miersch S, Bian X, Wallstrom G, Sibani S, Logvinenko T, Wasserfall CH, Schatz D, Atkinson M, Qiu J, Labaer J. (2013) Serological autoantibody profiling of type 1 diabetes by protein arrays. J Proteomics. 2013 Oct 19. pii: S1874-3919(13)00530-7. doi: 10.1016/j.jprot.2013.10.018. [Epub ahead of print] PMID: 24148850
Various pANT7_cGST plasmids
Prokop JW, Rauscher Iii FJ, Peng H, Liu Y, Araujo FC, Watanabe I, Reis FM, Milsted A. (2013) MAS promoter regulation: a role of Sry and tyrosine nitration of the KRAB domain of ZNF274 as a feedback mechanism. Clin Sci (Lond). Oct 15. [Epub ahead of print] PMID: 24128372
HsCD00329522
Hildick-Smith GJ, Cooney JD, Garone C, Kremer LS, Haack TB, Thon JN, Miyata N, Lieber DS, Calvo SE, Akman HO, Yien YY, Huston NC, Branco DS, Shah DI, Freedman ML, Koehler CM, Italiano JE Jr, Merkenschlager A, Beblo S, Strom TM, Meitinger T, Freisinger P, Donati MA, Prokisch H, Mootha VK, Dimauro S, Paw BH. (2013) Macrocytic Anemia and Mitochondriopathy Resulting from a Defect in Sideroflexin. Am J Hum Genet. Oct 9. pii: S0002-9297(13)00424-2. doi: 10.1016/j.ajhg.2013.09.011. [Epub ahead of print] PMID: 24119684
HsCD00352377
Mohan S, Glushakov AV, Decurnou A, Narumiya S, Doré S. (2013) Contribution of PGE2 EP1 receptor in hemin-induced neurotoxicity. Front Mol Neurosci. Oct 7;6:31. PMID: 24109429
HsCD00305296
HsCD00403541
HsCD00305663
HsCD00304370
Shang J, Wang G, Yang Y, Huang X, Du Z. (2013) Expression, purification and crystallization of the FP domain of the human F-box protein Fbxo7. Acta Crystallogr Sect F Struct Biol Cryst Commun. Oct 1;69(Pt 10):1097-1099. Epub 2013 Sep 28. PMID: 24100556
HsCD00082371
Mohit Narwal, Jarkko Koivunen, Teemu Haikarainen, Ezeogo Obaji, Ongey Elvis, Legala, Harikanth Venkannagari, Päivi Joensuu, Taina Pihlajaniemi , and Lari Lehtiö. (2013) Discovery of Tankyrase Inhibiting Flavones with Increased Potency and Isoenzyme Selectivity. J Med Chem. Oct 11. [Epub ahead of print]PMID: 24116873
HsCD00302726
Davda D, El Azzouny MA, Tom CT, Hernandez JL, Majmudar JD, Kennedy RT, Martin BR. (2013) Profiling targets of the irreversible palmitoylation inhibitor 2-bromopalmitate. ACS Chem Biol. 2013 Sep 20;8(9):1912-7. doi: 10.1021/cb400380s. Epub 2013 Jul 25. PMID: 23844586
HsCD00301260
HsCD00515835
Wellensiek BP, Larsen AC, Flores J, Jacobs BL, Chaput JC. (2013) A leader sequence capable of enhancing RNA expression and protein synthesis in mammalian cells. Protein Sci. 2013 Aug 1. doi: 10.1002/pro.2325. [Epub ahead of print] PMID: 23908110
Goel RK, Miah S, Black K, Kalra N, Dai C, Lukong KE. (2013) The unique N-terminal region of SRMS regulates enzymatic activity and phosphorylation of its novel substrate Dok1. FEBS J. Jul 3. doi: 10.1111/febs.12420. [Epub ahead of print] PMID: 23822091
HsCD00356544
Nchoutmboube JA, Viktorova EG, Scott AJ, Ford LA, Pei Z, et al. (2013) Increased Long Chain acyl-Coa Synthetase Activity and Fatty Acid Import Is Linked to Membrane Synthesis for Development of Picornavirus Replication Organelles. PLoS Pathog 9(6): e1003401. doi:10.1371/journal.ppat.1003401 PMID: 23762027
HsCD00078974
Kampa-Schittenhelm KM, Heinrich MC, Akmut F, Rasp KH, Illing B, Döhner H, Döhner K, Schittenhelm MM. (2013) Cell cycle-dependent activity of the novel dual PI3K-MTORC1/2 inhibitor NVP-BGT226 in acute leukemia. Mol Cancer. 2013 May 24;12(1):46. [Epub ahead of print] PMID: 23705826
HsCD00038790
Soetedjo L, Glover DA and Jin H. (2013) Targeting of vasoactive intestinal peptide receptor 2, VPAC2, a secretin family G-protein coupled receptor, to primary cilia. Open Biology Posted Online
May 24, 2013; doi: 10.1242/bio.20134747 PMID: 23862016
HsCD00515712
Emrick D, Ravichandran A, Gosai J, Lu S, Gordon DM, Smith L. (2013) The Antifungal Occidiofungin Triggers an Apoptotic Mechanism of Cell Death in Yeast. J Nat Prod. May 24;76(5):829-38. doi: 10.1021/np300678e. Epub 2013 May 14. PMID: 23672235
HsCD00005948
Yu X, Wallstrom G, Magee DM, Qiu J, Mendoza DE, Wang J, Bian X, Graves M, Labaer J. (2013) Quantifying antibody binding on protein microarrays using microarray nonlinear calibration. Biotechniques. May;54(5):257-64. doi: 10.2144/000114028. PMID: 23662896
Choi HK, Yoo JY, Jeong MH, Park SY, Shin DM, Jang SW, Yoon HG, Choi KC. (2013) Protein Kinase A phosphorylates NCoR to enhance its nuclear translocation and repressive function in human prostate cancer cells. J Cell Physiol. Jun;228(6):1159-65. doi: 10.1002/jcp.24269. PMID: 23129261
PKA
HsCD00005977
Kim E, Lu HC, Zoghbi HY, Song JJ. (2013) Structural basis of protein complex formation and reconfiguration by polyglutamine disease protein Ataxin-1 and Capicua. Genes Dev. Mar 15;27(6):590-5. doi: 10.1101/gad.212068.112. PMID: 23512657
MmCD00083297
Kampa-Schittenhelm KM, Heinrich MC, Akmut F, Döhner H, Döhner K, Schittenhelm MM. (2013) Quizartinib (AC220) is a potent second generation class III tyrosine kinase inhibitor that displays a distinct inhibition profile against mutant-FLT3, -PDGFRA and -KIT isoforms. Mol Cancer. Mar 7;12(1):19. [Epub ahead of print] PMID: 23497317
HsCD00038790
Filippova EV, Weston LA, Kuhn ML, Geissler B, Gehring AM, Armoush N, Adkins CT, Minasov G, Dubrovska I, Shuvalova L, Winsor JR, Lavis LD, Satchell KJ, Becker DP, Anderson WF, Johnson RJ. (2013) J Biol Chem. 2013 Apr 12;288(15):10522-35. doi: 10.1074/jbc.M112.446625. Epub 2013 Feb 19. PMID: 23430251
HsCD00043610
Okamoto Y, Bernstein JD, Shikano S. (2013) Role of C-terminal Membrane-Proximal Basic Residues in Cell Surface Trafficking of HIV Coreceptor GPR15. J Biol Chem. Feb 19. [Epub ahead of print] PMID: 23430259
HsCD00440165
HsCD00440316
HsCD00446753
HsCD00305574
HsCD00305341
HsCD00041423
HsCD00040142
HsCD00045364
French JB, Zhao H, An S, Niessen S, Deng Y, Cravatt BF, Benkovic SJ. (2013) Hsp70/Hsp90 chaperone machinery is involved in the assembly of the purinosome. Proc Natl Acad Sci U S A. Feb 12;110(7):2528-33. doi: 10.1073/pnas.1300173110. Epub 2013 Jan 28. PMID: 23359685
HsCD00045312
HsCD00301392
HsCD00082147
HsCD00075966
HsCD00081553
Bansal N, Zhang M, Bhaskar A, Itotia P, Lee E, Shlyakhtenko LS, Lam TT, Fritz A, Berezney R, Lyubchenko YL, Stafford WF, Thapar R. (2013) Assembly of the SLIP1-SLBP Complex on Histone mRNA Requires Heterodimerization and Sequential Binding of SLBP Followed by SLIP1. Biochemistry Jan 22;52(3):520-36. doi: 10.1021/bi301074r. Epub 2013 Jan 11. PMID: 23286197
Brooks CL, Morrison M, Lemieux MJ. (2013) Rapid expression screening of eukaryotic membrane proteins in pichia pastoris. Protein Science Jan 22. doi: 10.1002/pro.2223. [Epub ahead of print] PMID: 23339074
HsCD00288168
ScCD00009389
Aras S, Pak O, Sommer N, Finley R Jr, Hüttemann M, Weissmann N, Grossman LI. (2013) Oxygen-dependent expression of cytochrome c oxidase subunit 4-2 gene expression is mediated by transcription factors RBPJ, CXXC5 and CHCHD2. Nucleic Acids Research 2013 Jan 8. [Epub ahead of print] PMID: 23303788
HsCD00074691
Chakrabarty A, Bhola NE, Sutton C, Ghosh R, Kuba MG, Dave B, Chang JC, Arteaga CL. (2013) Trastuzumab-Resistant Cells Rely on a HER2-PI3K-FoxO-Survivin Axis and Are Sensitive to PI3K Inhibitors. Cancer Research Feb 1;73(3):1190-200. doi: 10.1158/0008-5472.CAN-12-2440. Epub 2012 Nov 29. PMID: 23204226
HsCD00074849
Manzano-Román R, Díaz-Martín V, González-González M, Matarraz S, Álvarez-Prado AF, LaBaer J, Orfao A, Pérez-Sánchez R, Fuentes M. (2012) Self-assembled protein arrays from an Ornithodoros moubata salivary gland expression library. Journal of Proteome Research Dec 7;11(12):5972-82. doi: 10.1021/pr300696h. Epub 2012 Nov 20. PMID: 23140423
pANT7_cGST clones
Patel D, Schultz LW, Umland TC. (2012) Influenza A polymerase subunit PB2 possesses overlapping binding sites for polymerase subunit PB1 and human MAVS proteins. Virus Research Dec 12. pii: S0168-1702(12)00465-0. doi: 10.1016/j.virusres.2012.12.003. [Epub ahead of print] PMID: 23246644
HsCD00296475
Wang J, Barker K, Steel J, Park J, Saul J, Festa F, Wallstrom G, Yu X, Bian X, Anderson KS, Figueroa J, Labaer J, Qiu J. (2012) A versatile protein microarray platform enabling antibody profiling against denatured proteins. Proteomics Clin Appl. Oct 2. doi: 10.1002/prca.201200062. [Epub ahead of print] PMID: 23027520
pANT7_cGST clones
Festa F, Rollins SM, Vattem K, Hathaway M, Lorenz P, Mendoza EA, Yu X, Qiu J, Kilmer G, Jensen P, Webb B, Ryan ET, LaBaer J. (2012) Robust microarray production of freshly expressed proteins in a human milieu. Proteomics Clin Appl. Oct 2. doi: 10.1002/prca.201200063. [Epub ahead of print] PMID: 23027544
pANT7_cGST clones
Yoo JY, Choi HK, Choi KC, Park SY, Ota I, Yook JI, Lee YH, Kim K, Yoon HG. (2012) Nuclear hormone receptor corepressor promotes esophageal cancer cell invasion by transcriptional repression of interferon-γ-inducible protein 10 in a casein kinase 2-dependent manner. Mol Biol Cell. Aug;23(15):2943-54. Epub 2012 Jun 6. PMID: 22675025
HsCD00005662
Kluza J, Corazao-Rozas P, Touil Y, Jendoubi M, Maire C, Guerreschi P, Jonneaux A, Ballot C, Balayssac S, Valable S, Corroyer-Dulmont A, Bernaudin M, Malet-Martino M, de Lassalle EM, Maboudou P, Formstecher P, Polakowska R, Mortier L, Marchetti P. (2012) Inactivation of the HIF-1α/PDK3 Signaling Axis Drives Melanoma toward Mitochondrial Oxidative Metabolism and Potentiates the Therapeutic Activity of Pro-Oxidants. Cancer Research. Oct 1;72(19):5035-47. doi: 10.1158/0008-5472.CAN-12-0979. Epub 2012 Aug 3. PMID: 22865452
HsCD00038044
Tagliabracci VS, Engel JL, Wen J, Wiley SE, Worby CA, Kinch LN, Xiao J, Grishin NV, Dixon JE. (2012) Secreted kinase phosphorylates extracellular proteins that regulate biomineralization. Science. Jun 1;336(6085):1150-3. doi: 10.1126/science.1217817. Epub 2012 May 10. PMID: 22582013
MmCD00313240
Gibson DS, Qiu J, Mendoza EA, Barker K, Rooney ME, Labaer J. (2012) Circulating and synovial antibody profiling of juvenile arthritis patients by nucleic acid programmable protein arrays. Arthritis Res Ther. Apr 17;14(2):R77. PMID: 22510425
pANT7_cGST clones
Bislev SL, Kusebauch U, Codrea MC, Beynon RJ, Harman VM, Røntved CM, Aebersold R, Moritz RL, Bendixen E. (2012) Quantotypic properties of QconCAT peptides targeting bovine host response to Streptococcus uberis. J Proteome Res. Mar 2;11(3):1832-43. Epub 2012 Feb 8. PMID: 22256911
Griffiths S, Byrne RT, Antson AA, Whelan F. (2012) Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of human dihydrouridine synthase. Acta Crystallogr Sect F Struct Biol Cryst Commun. Mar 1;68(Pt 3):333-6. Epub 2012 Feb 22. PMID: 22442237
HsCD00303989
Gorbacheva MA, Yarosh AG, Dorovatovskii PV, Rakitina TV, Boiko KM, Korzhenevskii DA, Lipkin AV, Popov VO and Shumilin IA. (2012) A new approach to studying the structural and functional properties of proteins with unknown functions. Russian Journal of Bioorganic Chemistry. Jan-Feb 38(1): 83-88. PMID: 22792712
HsCD00288489
Stergachis AB, MacLean B, Lee K, Stamatoyannopoulos JA, MacCoss MJ. (2011) Rapid empirical discovery of optimal peptides for targeted proteomics. Nature Methods Nov 6;8(12):1041-3. doi: 10.1038/nmeth.1770. PMID: 22056677
pANT7_cGST clones
Publications using or referencing PSI:Biology-MR Plasmids
Elshahawi SI, Ramelot TA, Seetharaman J, Chen J, Singh S, Yang Y, Pederson K, Kharel MK, Xiao R, Lew S, Yennamalli RM, Miller MD, Wang F, Tong L, Montelione GT, Kennedy MA, Bingman CA, Zhu H, Phillips GN Jr, Thorson JS. (2014) Structure-guided functional characterization of enediyne self-sacrifice resistance proteins, CalU16 and CalU19. ACS Chem Biol. 2014 Oct 17;9(10):2347-58. doi: 10.1021/cb500327m. Epub 2014 Aug 13. PMID: 25079510
MeCD000597015
Ticak T, Kountz DJ, Girosky KE, Krzycki JA, Ferguson DJ Jr (2014). A nonpyrrolysine member of the widely distributed trimethylamine methyltransferase family is a glycine betaine methyltransferase. Proc Natl Acad Sci U S A. 2014 Oct 13. pii: 201409642. [Epub ahead of print] PMID: 25313086
DhCD00291496
Driggers CM, Hartman SJ, Karplus PA. (2014) Structures of - and Gln-type bacterial cysteine dioxygenase homologs. Protein Sci. 2014 Oct 11. doi: 10.1002/pro.2587. [Epub ahead of print] PMID: 25307852
BsCD00530862
Gong Z1, Kessans SA, Song L, Dörner K, Lee HH, Meador LR, LaBaer J, Hogue BG, Mor TS, Fromme P. (2014) Recombinant expression, purification and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41. Protein Sci. 2014 Aug 23. doi: 10.1002/pro.2540. [Epub ahead of print] PMID: 25155369
EvNO00304415
*Bruno AE, Ruby AM, Luft JR, Grant TD, Seetharaman J, Montelione GT, Hunt JF, Snell EH. (2014) Comparing chemistry to outcome: the development of a chemical distance metric, coupled with clustering and hierarchal visualization applied to macromolecular crystallography. PLoS One. 2014 Jun 27;9(6):e100782. doi: 10.1371/journal.pone.0100782. eCollection 2014. PMID: 24971458
BfCD00627674
Manjasettya BA, Chancec MR, Burley SK, Panjikarf S, Almo SC. (2014) Crystal structure of Clostridium acetobutylicum aspartate kinase (CaAk): An important allosteric enzyme for amino acids production. Biotechnology Reports Volume 3, September 2014, Pages 73–85. PMID: 25170437
CaCD00423555
Harbers M. (2014) Wheat Germ Systems for Cell-Free Protein Expression. FEBS Lett. Jun 12. pii: S0014-5793(14)00471-2. doi: 10.1016/j.febslet.2014.05.061. [Epub ahead of print] PMID: 24931374
Wheat Germ Expression Vectors
Liu EY, Russ J, Wu K, Neal D, Suh E, McNally AG, Irwin DJ, Van Deerlin VM, Lee EB. (2014) C9orf72 hypermethylation protects against repeat expansion-associated pathology in ALS/FTD. Acta Neuropathol. 2014 May 8. [Epub ahead of print] PMID: 24806409
EvNO00085130
Hauke Drechsler, Toni McHugh, Martin R Singleton, Nicholas J Carter, Andrew D McAinsh. (2014) The Kinesin-12 Kif15 is a processive track-switching tetramer. March 25, 2014 eLife 2014;3:e01724 http://dx.doi.org/10.7554/eLife.01724 PMID: 24668168
EvNO00085126
Cragle C, Macnicol AM. (2014) Musashi-directed translational activation of target mRNAs is mediated by the poly[A] polymerase, Germline Development-2. J Biol Chem. 2014 Mar 18. [Epub ahead of print] PMID: 24644291
MmCD00382513
Hilde Lysvand, Lars Hagen, Lidija Klubick, Geir Slupphaug, Ole-Jan Iversen (2014) Psoriasis pathogenesis — Pso p27 is generated from SCCA1 with chymase. http://dx.doi.org/10.1016/j.bbadis.2014.02.005 PMID: 24560885
HsCD00343153
Stark JL, Mehla K, Chaika N, Acton TB, Xiao R, Singh PK, Montelione GT, Powers R. (2014) The Structure and Function of Human DnaJ Homolog Subfamily A Member 1 (DNAJA1) and Its Relationship to Pancreatic Cancer. Biochemistry. 2014 Feb 10. [Epub ahead of print] PMID: 24512202
Gall DL, Kim H, Lu F, Donohue TJ, Noguera DR, Ralph J. (2014) Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway. J Biol Chem. 2014 Feb 7. [Epub ahead of print] PMID: 24509858
TvCD00084286
Guest Editors: Alessandro Paiardini, Barbara Cellini, Ashley M. Buckle, and Roberto Contestabile . PLP-Dependent Enzymes. BioMed Research International Volume 2014 (2014), Article ID 856076, 2 pages http://dx.doi.org/10.1155/2014/856076 PMID: 24527459
CdCD00289761
Bo Kong, and Grace L. Guo. (2014) Soluble Expression of Disulfide Bond Containing Proteins FGF15 and FGF19 in the Cytoplasm of Escherichia coli. PLOS One. DOI: 10.1371/journal.pone.0085890 PMID: 24465767
TvCD00084286
EvNO00085133
Tatyana A. Lyakhova, Jefferson D. Knight. (2013) The C2 domains of granuphilin are high-affinity sensors for plasma membrane lipids. Chem Phys Lipids. Oct 31. pii: S0009-3084(13)00137-0. doi: 10.1016/j.chemphyslip.2013.10.009. [Epub ahead of print] PMID: 24184645
HsCD00321956
Octavia Y. Goodwin, Maggie S. Thomasson, Aaron J. Lin, Michelle M. Sweeney, Megan A. Macnaughtan (2013) E. coli sabotages the in vivo production of O-linked β-N-acetylglucosamine-modified proteins, Journal of Biotechnology, Available online 16 October 2013, http://dx.doi.org/10.1016/j.jbiotec.2013.10.008. PMID: 24140293
HsCD00331895
Barba M, Dutoit R, Legrain C, Labedan B. (2013) Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism. BMC Syst Biol. Oct 5;7(1):99. [Epub ahead of print] PMID: 24093154
EcCD00311947
Alessandra Astegno, Alejandro Giorgetti, Alessandra Allegrini, Barbara Cellini, and Paola Dominici. (2013) Characterization of C-S Lyase from C. diphtheriae: A Possible Target for New Antimicrobial Drugs. BioMed Research International. Volume 2013 (2013), Article ID 701536, 13 pages PMID: 24106714
CdCD00289761
Da Fonseca I, Kizjakina K, Sobrado P. (2013) UDP-galactopyranose mutases from Leishmania species that cause 4 visceral and cutaneous leishmaniasis. Arch Biochem Biophys. Sep 3. pii: S0003-9861(13)00257-9. doi: 10.1016/j.abb.2013.08.014. [Epub ahead of print] PMID: 24012809
EvNO00085126
Andre C, Kim SW, Yu XH, Shanklin J. (2013) Fusing catalase to an alkane-producing enzyme maintains enzymatic activity by converting the inhibitory byproduct H2O2 to the cosubstrate O2. Proc Natl Acad Sci U S A. Feb 19;110(8):3191-6. doi: 10.1073/pnas.1218769110. Epub 2013 Feb 7. PMID: 23391732
PpCD00092409
Liu J, Li F, Rozovsky S. (2013) The intrinsically disordered membrane protein selenoprotein s is a reductase in vitro. Biochemistry. May 7;52(18):3051-61. doi: 10.1021/bi4001358. Epub 2013 Apr 24. PMID: 23566202
TvCD00084286
Thompson J, Pikis A, Rich J, Hall BG, Withers SG. (2013) α-Galacturonidase(s): A new class of Family 4 glycoside hydrolases with strict specificity and a unique CHEV active site motif. FEBS Lett. Mar 18;587(6):799-803. doi: 10.1016/j.febslet.2013.02.004. Epub 2013 Feb 14. PMID: 23416295
BsCD00292418
Xu A, Desai AM, Brenner SE, Kirsch JF. (2013) A continuous fluorescence assay for the characterization of Nudix hydrolases. Anal Biochem. Jun 15;437(2):178-84. doi: 10.1016/j.ab.2013.02.023. Epub 2013 Mar 7. PMID: 23481913
MmCD00291907
Singh S, Chang A, Helmich KE, Bingman CA, Wrobel RL, Beebe ET, Makino SI, Aceti DJ, Dyer K, Hura GL, Sunkara M, Morris AJ, Phillips GN, Thorson JS. (2013) Structural and functional characterization of CalS11, the TDPrhamnose 3’-O-methyltransferase involved in calicheamicin biosynthesis. ACS Chem Biol. May 10. [Epub ahead of print] PMID: 23662776
EvNO00084283
Das D, Lee WS, Grant JC, Chiu HJ, Farr CL, Vance J, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Kornfeld S, Wilson IA. (2013) Structure and function of the DUF2233 domain in bacteria and in the human mannose 6-phosphate uncovering enzyme. J Biol Chem. Apr 9. [Epub ahead of print] PMID: 23572527
BoCD00384454
Deka RK, Brautigam CA, Liu WZ, Tomchick DR, Norgard MV. (2013) The TP0796 lipoprotein of Treponema pallidum is a bimetal-dependent FAD pyrophosphatase with a potential role in flavin homeostasis. J Biol Chem. Feb 27. [Epub ahead of print] PMID: 23447540
EcCD00385238
Durmaz E, Kuyucak S, Sezerman UO. (2013) Modifying the catalytic preference of tributyrin in Bacillus thermocatenulatus lipase through in-silico modeling of enzyme-substrate complex. Protein Eng Des Sel. Feb 18. [Epub ahead of print] PMID: 23424251
EvNO00084271
Jarecki BW, Makino S, Beebe ET, Fox BG, Chanda B. (2013) Function of Shaker potassium channels produced by cell-free translation upon injection into Xenopus oocytes. Sci Rep.;3:1040. doi: 10.1038/srep01040. Epub 2013 Jan 8. PMID: 23301161
EvNO00306667
Schaefer SA, Dong M, Rubenstein RP, Wilkie WA, Bahnson BJ, Thorpe C, Rozovsky S. (2013) (77)Se enrichment of proteins expands the biological NMR toolbox. J Mol Biol. Jan 23;425(2):222-31. doi: 10.1016/j.jmb.2012.11.011. Epub 2012 Nov 15. PMID: 23159557
TvCD00084286
Dutoit R, Brandt N, Legrain C, Bauvois C. (2013) Functional characterization of two M42 aminopeptidases erroneously annotated as cellulases. PLoS One 7(11):e50639. doi: 10.1371/journal.pone.0050639. Epub 2012 Nov 30. PMID: 23226342
TmCD00089984
Hedge MK, Gehring AM, Adkins CT, Weston LA, Lavis LD, Johnson RJ. (2012) The structural basis for the narrow substrate specificity of an acetyl esterase from Thermotoga maritima. Biochim Biophys Acta Sep;1824(9):1024-30. doi: 10.1016/j.bbapap.2012.05.009. Epub 2012 Jun 1. PMID: 22659119
TmCD00083900
Mishra S, Bhagavat R, Chandra N, Vijayarangan N, Rajeswari H, Ajitkumar P. (2012) Cloning, expression, purification, and biochemical characterisation of the FIC motif containing protein of Mycobacterium tuberculosis. Protein Expr Purif. Nov;86(1):58-67. doi: 10.1016/j.pep.2012.08.020. Epub 2012 Sep 13. PMID: 22982230
EvNO00084265
Fang H, Caranto JD, Mendoza R, Taylor AB, Hart PJ, Kurtz DM Jr. (2012) Histidine ligand variants of a flavo-diiron protein: effects on structure and activities. J Biol Inorg Chem. Sep 19. [Epub ahead of print] PMID: 22990880
TmCD00089997
J, Srinivasan P, Pham DN, and Rozovsky S. (2012) Expression and purification of the membrane enzyme selenoprotein K. Protein Expr Purif. Nov;86(1):27-34. doi: 10.1016/j.pep.2012.08.014. Epub 2012 Aug 31. PMID: 22963794
TvCD00084286
Steere AN, Roberts SE, Byrne SL, Dennis Chasteen N, Bobst CE, Kaltashov IA, Smith VC, MacGillivray RT, Mason AB. (2010) Properties of a homogeneous C-lobe prepared by introduction of a TEV cleavage site between the lobes of human transferrin. Protein Expr Purif. Jul;72(1):32-41. doi: 10.1016/j.pep.2010.01.008. Epub 2010 Jan 11. PMID: 20064616
TvCD00084286
Wang L, Huang H, Nguyen HH, Allen KN, Mariano PS, Dunaway-Mariano D. (2010) Divergence of biochemical function in the HAD superfamily: D-glycero-D-manno-heptose-1,7-bisphosphate phosphatase (GmhB). Biochemistry. Feb 16;49(6):1072-81. doi: 10.1021/bi902018y. PMID: 20050615
MlCD00090897
Hillmann F, Riebe O, Fischer RJ, Mot A, Caranto JD, Kurtz DM Jr, Bahl H. (2009) Reductive dioxygen scavenging by flavo-diiron proteins of Clostridium acetobutylicum. FEBS Lett. Jan 5;583(1):241-5. doi: 10.1016/j.febslet.2008.12.004. Epub 2008 Dec 11. PMID: 19084524
TmCD00085043
Publications citing plasmids deposited to DNASU or the PSI:Biology-MR
Qingping Xu2, Dominique Mengin-Lecreulx , Delphine Patin4, Joanna C. Grant5, Hsiu-Ju Chiu, Lukasz Jaroszewski, Mark W. Knuth5, Adam Godzik7, Scott A. Lesley8, Marc-André Elsliger, Ashley M. Deacon, Ian A. Wilson. (2014) Structure-Guided Functional Characterization of DUF1460 Reveals a Highly Specific NlpC/P60 Amidase Family. Dec 2;22(12):1799-809. doi: 10.1016/j.str.2014.09.018. Epub 2014 Nov 20. PMID: 25465128
BuCD00332345
Troy G. Hammerstrom, Lori B. Horton, Michelle C. Swick, Andrzej Joachimiak, Jerzy Osipiuk and Theresa M. Koehler (2014) Crystal structure of Bacillus anthracis virulence regulator AtxA and effects of phosphorylated histidines on multimerization and activity. DOI: 10.1111/mmi.12867 PMID: 25402841
Fabio Parmeggiani, Po-Ssu Huang, Sergey Vorobiev, Rong Xiao, Keunwan Park, Silvia Caprari, Min Su, Seetharaman Jayaraman, Lei Mao, Haleema Janjua, Gaetano T. Montelione, John Hunt, David Baker. (2014) A general computational approach for repeat protein design. J Mol Biol. 2014 Nov 14. pii: S0022-2836(14)00582-8. doi: 10.1016/j.jmb.2014.11.005. [Epub ahead of print] PMID: 25451037
SoCD00331040
Nilsson CL, Mostovenko E, Lichti CF, Ruggles K, Fenyo D, Rosenbloom KR, Hancock WS, Paik YK, Omenn GS, LaBaer J, Kroes RA, Uhlén M, Hober S, Vegvari A, Andrén PE, Sulman EP, Lang FF, Fuentes M, Carlsohn E, Emmett MR, Moskal JR, Berven FS, Fehniger TE, Marko-Varga G. (2014) Use of ENCODE Resources to Characterize Novel Proteoforms and Missing Proteins in the Human Proteome. J Proteome Res. 2014 Nov 4. [Epub ahead of print] PMID: 25369122
* Elshahawi SI, Ramelot TA, Seetharaman J, Chen J, Singh S, Yang Y, Pederson K, Kharel MK, Xiao R, Lew S, Yennamalli RM, Miller MD, Wang F, Tong L, Montelione GT, Kennedy MA, Bingman CA, Zhu H, Phillips GN, Thorson JS. (2014) Structure-guided functional characterization of enediyne self-sacrifice resistance proteins CalU16 and CalU19. ACS Chem Biol. 2014 Jul 31. [Epub ahead of print] PMID: 25079510
MeCD000597015
* Korczynska M, Xiang DF, Zhang Z, Xu C, Narindoshvili T, Kamat SS, Williams HJ, Chang SS, Kolb P, Hillerich B, Sauder JM, Burley SK, Almo SC, Swaminathan S, Shoichet BK, Raushel FM. (2014) Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate. Biochemistry. 2014 Jul 22;53(28):4727-38. doi: 10.1021/bi500595c. Epub 2014 Jul 9. PMID: 24955762
MsCD00628064
* Eletsky A, Michalska K, Houliston S, Zhang Q, Daily MD, Xu X, Cui H, Yee A, Lemak A, Wu B, Garcia M, Burnet MC4, Meyer KM, Aryal UK, Sanchez O, Ansong C, Xiao R, Acton TB, Adkins JN, Montelione GT, Joachimiak A, Arrowsmith CH, Savchenko A, Szyperski T, Cort JR. (2014) Structural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO. PLoS One. 2014 Jul 10;9(7):e101787. doi: 10.1371/journal.pone.0101787. eCollection 2014. PMID: 25010333
StCD00385027
StCD00385032
*Pulavarti SV, Huang YJ, Pederson K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Szyperski T. (2014) Solution NMR structures of immunoglobulin-like domains 7 and 12 from obscurin-like protein 1 contribute to the structural coverage of the human cancer protein interaction network. J Struct Funct Genomics. 2014 Jul 3. [Epub ahead of print] PMID: 24989974
HsCD00649973
* Xu X, Pulavarti SV, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. (2014) Solution NMR structures of homeodomains from human proteins ALX4, ZHX1, and CASP8AP2 contribute to the structural coverage of the Human Cancer Protein Interaction Network. J Struct Funct Genomics. 2014 Jun 19. [Epub ahead of print] PMID: 24941917
HsCD00650855
*Li J, Zhuo M, Pei L, Rajagopal M, Yu AS. (2014) Comprehensive cysteine-scanning mutagenesis reveals Claudin-2 pore-lining residues with different intrapore locations. J Biol Chem. Mar 7;289(10):6475-84. doi: 10.1074/jbc.M113.536888. Epub 2014 Jan 16. PMID: 24436330
Plasmids from TJMP
*Pulavarti SV1, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. (2014) Polypeptide backbone, Cβ and methyl group resonance assignments of the 24 kDa plectin repeat domain 6 from human protein plectin. Biomol NMR Assign. 2014 Apr 11. [Epub ahead of print] PMID: 24722902
HsCD00585037
*Rajagopalan S, Wang 2, Yu K, Kuzin AP, Richter F, Lew S, Miklos AE, Matthews ML, Seetharaman J, Su M, Hunt JF, Cravatt BF, Baker D. (2014) Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat Chem Biol. 2014 Apr 6. doi: 10.1038/nchembio.1498. [Epub ahead of print] PMID: 24705591
*Makowska-Grzyska, Magdalena, et al. "Protein Production for Structural Genomics Using E. coli Expression." Methods in molecular biology (Clifton, NJ) 1140 (2014): 89. PMID: 24590711
Makino S, Beebe ET, Markley JL, Fox BG. (2014) Cell-free protein synthesis for functional and structural studies. Methods Mol Biol. 1091:161-78. doi: 10.1007/978-1-62703-691-7_11. PMID: 24203331
Renato Bruni and Brian Kloss (2013) High-Throughput Cloning and Expression of Integral Membrane Proteins in Escherichia coli. Current Protocls in Protein Science. Nov 5; Unit 29.6, DOI: 10.1002/0471140864.ps2906s74 PMID: 24510647
EvNO00304420
EvNO00084271
EvNO00340964
EvNO00091443
Nicole Monroe, Han Han, Malgorzata D. Gonciarz, Debra M. Eckert, Mary Anne Karren, Frank G. Whitby, Wesley I. Sundquist, Christopher P. Hill, The oligomeric state of the active Vps4 AAA ATPase, Journal of Molecular Biology, Available online 23 October 2013, ISSN 0022-2836, http://dx.doi.org/10.1016/j.jmb.2013.09.043. PMID: 24161953
* Netra Joshi, Eric K. Hoobler, Steven Perry, Giovanni Diaz, Brian Grant Fox, and Theodore Russell Holman. (2013). Kinetic and Structural Investigations into the allosteric and pH effect on Substrate Specificity of Human Epithelial 15-Lipoxygenase-2. Biochemistry
EvNO00306669
*Das D, Hervé M, Elsliger MA, Kadam RU, Grant J, Chiu HJ, Knuth MW, Klock HE, Miller MD, Godzik A, Lesley SA, Deacon AM, Mengin-Lecreulx D, Wilson IA. (2013) Structure and function of a novel LD-carboxypeptidase A involved in peptidoglycan recycling. J Bacteriol. Oct 11. [Epub ahead of print] PMID: 24123814
NaCD00087837
*Odokonyero D, Ragumani S, Swaminathan S, Lopez MS, Bonanno JB, Ozerova ND, Woodard DR, Machala BW, Burley SK, Almo SC, Glasner ME. Divergent Evolution of Ligand Binding in the o-Succinylbenzoate Synthase Family. (2013) Biochemistry. Sep 24. [Epub ahead of print] PMID: 24060347
TfCD00336395
*Eschenfeldt WH, Makowska-Grzyska M, Stols L, Donnelly MI, Jedrzejczak R, Joachimiak A. (2013) New LIC vectors for production of proteins from genes containing rare codons. J Struct Funct Genomics. 2013 Sep 22. [Epub ahead of print] PMID: 24057978
EvNO00599463
EvNO00599464
EvNO00599483
EvNO00599484
EvNO00450865
EvNO00599485
EvNO00599486
EvNO00599504
EvNO00599523
EvNO00450863
*Qingping Xu, Hsiu-Ju Chiu, Carol L. Farr, Lukasz Jaroszewski, Mark W. Knuth, Mitchell D. Miller, Scott A. Lesley, Adam Godzik, Marc-Andr´e Elsliger, Ashley M. Deacon, Ian A. Wilson. (2013) Structures of a bifunctional cell-wall hydrolase CwlT containing a novel bacterial lysozyme and an NlpC/P60 DL-endopeptidase. Journal of Molecular Biology. PMID: 24051416
SaCD00328273
CdCD00085319
*Pulavarti SV, He Y, Feldmann EA, Eletsky A, Acton TB, Xiao R, Everett JK, Montelione GT, Kennedy MA, Szyperski T. (2013) Solution NMR structures provide first structural coverage of the large protein domain family PF08369 and complementary structural coverage of dark operative protochlorophyllide oxidoreductase complexes. J Struct Funct Genomics. 2013 Aug 21. [Epub ahead of print] PMID: 23963952
CtCD00536401
NsCD00338239
*Xu Q, Grant J, Chiu HJ, Farr CL, Jaroszewski L, Knuth MW, Miller MD, Lesley SA, Godzik A, Elsliger MA, Deacon and AM, Wilson IA. (2013) Crystal structure of a member of a novel family of dioxygenases (PF10014) reveals a conserved cupin fold and active site. Proteins. Jul 15. doi: 10.1002/prot.24362. [Epub ahead of print] PMID: 23852666
MpCD00325753
*Bianchetti CM, Harmann CH, Takasuka TE, Hura GL, Dyer K, Fox BG. (2013) Fusion of Dioxygenase and Lignin-binding Domains in a Novel Secreted Enzyme from Cellulolytic Streptomyces sp. SirexAA-E. J Biol Chem. Jun 21;288(25):18574-87. doi: 10.1074/jbc.M113.475848. Epub 2013 May 7. PMID: 23653358
EvNO00306669
*Gabrielsen M, Wołosewicz K, Zawadzka A, Kossakowski J, Nowak G, Wolak M, Stachowicz K, Siwek A, Ravna AW, Kufareva I, Kozerski L, Bednarek E, Sitkowski J, Bocian W, Abagyan R, Bojarski AJ, Sylte I, Chilmonczyk Z. (2013) Synthesis, antidepressant evaluation and docking studies of long-chain alkylnitroquipazines as serotonin transporter inhibitors. Chem Biol Drug Des. Jun;81(6):695-706. doi: 10.1111/cbdd.12116. Epub 2013 Apr 11. PMID: 23574807
HsCD00292947
HsCD00292946
HsCD00292942
HsCD00292938
HsCD00292925
HsCD00292924
*Michalska K, Tan K, Li H, Hatzos-Skintges C, Bearden J, Babnigg G, Joachimiak A. (2013) GH1-family 6-P-β-glucosidases from human microbiome lactic acid bacteria. Acta Crystallogr D Biol Crystallogr. Mar;69(Pt 3):451-63. doi: 10.1107/S0907444912049608. Epub 2013 Feb 16. PMID: 23519420
SmCD00454274
LpCD00454237
* Rossi P, Barbieri CM, Aramini JM, Bini E, Lee HW, Janjua H, Xiao R, Acton TB, Montelione GT. (2013) Structures of apo- and ssDNA-bound YdbC from Lactococcus lactis uncover the function of protein domain family DUF2128 and expand the single-stranded DNA-binding domain proteome. Nucleic Acids Res. Feb 1;41(4):2756-68. doi: 10.1093/nar/gks1348. Epub 2013 Jan 8. PMID: 23303792
LlCD00385692
*Froese DS, Forouhar F, Tran TH, Vollmar M, Kim YS, Lew S, Neely H, Seetharaman J, Shen Y, Xiao R, Acton TB, Everett JK, Cannone G, Puranik S, Savitsky P, Krojer T, Pilka ES, Kiyani W, Lee WH, Marsden BD, von Delft F, Allerston CK, Spagnolo L, Gileadi O, Montelione GT, Oppermann U, Yue WW, Tong L. (2013) Crystal structures of malonyl-coenzyme a decarboxylase provide insights into its catalytic mechanism and disease-causing mutations. Structure. Jun 18. pii: S0969-2126(13)00159-7. doi: 10.1016/j.str.2013.05.001. [Epub ahead of print] PMID: 23791943
RvCD00339101
RpCD00591508
*Mills JL, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. (2013) Solution NMR structure of the helicase associated domain BVU_0683 (627–691) from Bacteroides vulgatus provides first structural coverage for protein domain family PF03457 and indicates domain binding to DNA. J Struct Funct Genomics. Mar;14(1):19-24. doi: 10.1007/s10969-012-9148-0. Epub 2012 Nov 16. PMID: 23160728
BvCD00536157
*Bianchetti CM, Harmann CH, Takasuka TE, Hura GL, Dyer K, Fox BG. (2013) Fusion of dioxygenase and lignin-binding domains in a novel secreted enzyme from cellulolytic Streptomyces sp. SirexAA-E. J Biol Chem. 2013 May 7. [Epub ahead of print] PMID: 23653358
EvNO00306669
Skalicky JJ, Arii J, Wenzel DM, Stubblefield WM, Katsuyama A, Uter NT, Bajorek M, Myszka DG, Sundquist WI. J (2012) Interactions of the human LIP5 regulatory protein with endosomal sorting complexes required for transport. Biol Chem. Dec 21;287(52):43910-26. doi: 10.1074/jbc.M112.417899. Epub 2012 Oct 26. PMID: 23105106
*Richter F, Blomberg R, Khare SD, Kiss G, Kuzin AP, Smith AJ, Gallaher J, Pianowski Z, Helgeson RC, Grjasnow A, Xiao R, Seetharaman J, Su M, Vorobiev S, Lew S, Forouhar F, Kornhaber GJ, Hunt JF, Montelione GT, Tong L, Houk KN, Hilvert D, Baker D. (2012) Computational design of catalytic dyads and oxyanion holes for ester hydrolysis. J Am Chem Soc. Oct 3;134(39):16197-206. doi: 10.1021/ja3037367. Epub 2012 Sep 21. PMID: 22871159
*Ramelot TA, Rossi P, Forouhar F, Lee HW, Yang Y, Ni S, Unser S, Lew S, Seetharaman J, Xiao R, Acton TB, Everett JK, Prestegard JH, Hunt JF, Montelione GT, Kennedy MA. (2012) Structure of a specialized acyl carrier protein essential for lipid a biosynthesis with very long-chain Fatty acids in open and closed conformations. Biochemistry. Sep 18;51(37):7239-49. Epub 2012 Sep 7. PMID: 22876860
RpCD00339419
*Feldmann EA, Seetharaman J, Ramelot TA, Lew S, Zhao L, Hamilton K, Ciccosanti C, Xiao R, Acton TB, Everett JK, Tong L, Montelione GT, Kennedy MA. (2012) Solution NMR and X-ray crystal structures of Pseudomonas syringae Pspto_3016 from protein domain family PF04237 (DUF419) adopt a "double wing" DNA binding motif. J Struct Funct Genomics. Sep;13(3):155-62. Epub 2012 Aug 3. PMID: 22865330
PsCD00338285
*Wang C, Jiang Y, Ma J, Wu H, Wacker D, Katritch V, Han GW, Liu W, Huang XP, Vardy E, McCorvy JD, Gao X, Zhou XE, Melcher K, Zhang C, Bai F, Yang H, Yang L, Jiang H, Roth BL, Cherezov V, Stevens RC, Xu HE. (2013) Structural basis for molecular recognition at serotonin receptors. Science. May 3;340(6132):610-4. doi: 10.1126/science.1232807. Epub 2013 Mar 21. PMID: 23519210
HsCD00598434
HsCD00598435
*Swapna GV, Rossi P, Montelione AF, Benach J, Yu B, Abashidze M, Seetharaman J, Xiao R, Acton TB, Tong L, Montelione GT. (2012) Three structural representatives of the PF06855 protein domain family from Staphyloccocus aureus and Bacillus subtilis have SAM domain-like folds and different functions. J Struct Funct Genomics. 2012 Sep;13(3):163-70. Epub 2012 Jul 29. PMID: 22843344
*Vorobiev SM, Neely H, Yu B, Seetharaman J, Xiao R, Acton TB, Montelione GT, Hunt JF. (2012) Crystal structure of a catalytically active GG(D/E)EF diguanylate cyclase domain from Marinobacter aquaeolei with bound c-di-GMP product. J Struct Funct Genomics. Sep;13(3):177-83. Epub 2012 Jul 29. PMID: 22843345
MaCD00385657
* Aziz A, Hess JF, Budamagunta MS, Voss JC, Kuzin AP, Huang YJ, Xiao R, Montelione GT, FitzGerald PG, Hunt JF. The structure of vimentin linker 1 and rod 1B domains characterized by site-directed spin-labeling electron paramagnetic resonance (SDSL-EPR) and X-ray crystallography. (2012) J Biol Chem. Aug 17;287(34):28349-61. doi: 10.1074/jbc.M111.334011. Epub 2012 Jun 26. PMID: 22740688
HsCD00338421
HsCD00338420
HsCD00331888
*Wu Y, Punta M, Xiao R, Acton TB, Sathyamoorthy B, Dey F, Fischer M, Skerra A, Rost B, Montelione GT, Szyperski T. (2012) NMR structure of lipoprotein YxeF from Bacillus subtilis reveals a calycin fold and distant homology with the lipocalin Blc from Escherichia coli. PLoS One. 7(6):e37404. doi: 10.1371/journal.pone.0037404. Epub 2012 Jun 5. PMID: 22693626
BsCD00429650
*Aramini JM, Petrey D, Lee DY, Janjua H, Xiao R, Acton TB, Everett JK, Montelione GT. (2012) Solution NMR structure of Alr2454 from Nostoc sp. PCC 7120, the first structural representative of Pfam domain family PF11267. J Struct Funct Genomics. Sep;13(3):171-6. Epub 2012 May 17. PMID: 22592539
NsCD00541071
* Snyder DA, Aramini JM, Yu B, Huang YJ, Xiao R, Cort JR, Shastry R, Ma LC, Liu J, Rost B, Acton TB, Kennedy MA, Montelione GT. (2012) Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus. Proteins. Jul;80(7):1901-6. doi: 10.1002/prot.24071. Epub 2012 Apr 16. PMID: 22422653
*Eletsky A, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. (2012) Solution NMR structures reveal a distinct architecture and provide first structures for protein domain family PF04536. J Struct Funct Genomics. Mar;13(1):9-14. Epub 2011 Dec 24. PMID: 22422653
PgCD00536093
CgCD00338496
*Xu Q, Göhler AK, Kosfeld A, Carlton D, Chiu HJ, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Jahreis K, Wilson IA. (2012) The structure of Mlc titration factor A (MtfA/YeeI) reveals a prototypical zinc metallopeptidase related to anthrax lethal factor. J Bacteriol. Jun;194(11):2987-99. doi: 10.1128/JB.00038-12. Epub 2012 Mar 30. PMID: 22467785
KpCD00104687
*Ertekin A, Aramini JM, Rossi P, Leonard PG, Janjua H, Xiao R, Maglaqui M, Lee HW, Prestegard JH, Montelione GT. (2012) Human cyclin-dependent kinase 2-associated protein 1 (CDK2AP1) is dimeric in its disulfide-reduced state, with natively disordered N-terminal region. J Biol Chem. May 11;287(20):16541-9. doi: 10.1074/jbc.M112.343863. Epub 2012 Mar 14. PMID: 22427660
HsCD00339479
*Wu H, Wacker D, Mileni M, Katritch V, Han GW, Vardy E, Liu W, Thompson AA, Huang XP, Carroll FI, Mascarella SW, Westkaemper RB, Mosier PD, Roth BL, Cherezov V, Stevens RC. (2012) Structure of the human κ-opioid receptor in complex with JDTic. Nature. Mar 21;485(7398):327-32. doi: 10.1038/nature10939. PMID: 22437504
HsCD00586115<
* Vorobiev SM, Huang YJ, Seetharaman J, Xiao R, Acton TB, Montelione GT, Tong L. (2012) Human retinoblastoma binding protein 9, a serine hydrolase implicated in pancreatic cancers. Protein Pept Lett. 2012 Feb;19(2):194-7. PMID: 21933118
*Xu Q, Christen B, Chiu HJ, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Figurski DH, Shapiro L, Wilson IA. (2012) Structure of the pilus assembly protein TadZ from Eubacterium rectale: implications for polar localization. Mol Microbiol. Feb;83(4):712-27. doi: 10.1111/j.1365-2958.2011.07954.x. Epub 2012 Jan 18. PMID: 22211578
ErCD00382572
* Eletsky A, Petrey D, Zhang QC, Lee HW, Acton TB, Xiao R, Everett JK, Prestegard JH, Honig B, Montelione GT, Szyperski T. (2012) Solution NMR structures reveal unique homodimer formation by a winged helix-turn-helix motif and provide first structures for protein domain family PF10771. J Struct Funct Genomics. Mar;13(1):1-7. Epub 2012 Jan 6. PMID: 22223187
*Kamat SS, Holmes-Hampton GP, Bagaria A, Kumaran D, Tichy SE, Gheyi T, Zheng X, Bain K, Groshong C, Emtage S, Sauder JM, Burley SK, Swaminathan S, Lindahl PA, Raushel FM. (2011) The catalase activity of diiron adenine deaminase. Protein Sci. Dec;20(12):2080-94. doi: 10.1002/pro.748. Epub 2011 Nov 9. PMID: 21998098
*Forouhar F, Saadat N, Hussain M, Seetharaman J, Lee I, Janjua H, Xiao R, Shastry R, Acton TB, Montelione GT, Tong L. (2011) A large conformational change in the putative ATP pyrophosphatase PF0828 induced by ATP binding. Acta Crystallogr Sect F Struct Biol Cryst Commun. Nov 1;67(Pt 11):1323-7. doi: 10.1107/S1744309111031447. Epub 2011 Oct 25.
*Aramini JM, Rossi P, Fischer M, Xiao R, Acton TB, Montelione GT. (2011) Solution NMR structure of VF0530 from Vibrio fischeri reveals a nucleic acid-binding function. Proteins. Oct;79(10):2988-91. doi: 10.1002/prot.23121. Epub 2011 Aug 26. PMID: 21905121
VfCD00305952
*Goren MA, Fox BG, Bangs JD. (2011) Amino acid determinants of substrate selectivity in the Trypanosoma brucei sphingolipid synthase family. Biochemistry. Oct 18;50(41):8853-61. doi: 10.1021/bi200981a. Epub 2011 Sep 22. PMID: 21899277
EvNO00084283
EvNO00084284
EvNO00306667
*Ramelot TA, Yang Y, Xiao R, Acton TB, Everett JK, Montelione GT, Kennedy MA. (2011) Solution NMR structure of BT_0084, a conjugative transposon lipoprotein from Bacteroides thetaiotamicron. Proteins. Oct 29. doi: 10.1002/prot.23235. [Epub ahead of print] PMID: 22116783
*Kim Y, Babnigg G, Jedrzejczak R, Eschenfeldt WH, Li H, Maltseva N, Hatzos-Skintges C, Gu M, Makowska-Grzyska M, Wu R, An H, Chhor G, Joachimiak A. (2011) High-throughput protein purification and quality assessment for crystallization. Methods. Sep;55(1):12-28. Epub 2011 Aug 31. PMID: 21907284
*Kufareva I, Rueda M, Katritch V, Stevens RC, Abagyan R; GPCR Dock 2010 participants. (2011) Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment. Structure. Aug 10;19(8):1108-26. doi: 10.1016/j.str.2011.05.012. PMID: 21827947
HsCD00292941
HsCD00292940
HsCD00292922
HsCD00292917
HsCD00292912
*Goble AM, Zhang Z, Sauder JM, Burley SK, Swaminathan S, Raushel FM. (2011) Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine. Biochemistry. Aug 2;50(30):6589-97. Epub 2011 Jul 6. PMID: 21710971
UnCD00343342
PaCD00343352
UnCD00343343
*Berardi MJ, Shih WM, Harrison SC, Chou JJ. (2011) Mitochondrial uncoupling protein 2 structure determined by NMR molecular fragment searching. Nature. Jul 24;476(7358):109-13. doi: 10.1038/nature10257. PMID: 21785437
MmCD00433656
*Beebe ET, Makino S, Nozawa A, Matsubara Y, Frederick RO, Primm JG, Goren MA, Fox BG. (2011) Robotic large-scale application of wheat cell-free translation to structural studies including membrane proteins. N Biotechnol. Apr 30;28(3):239-49. Epub 2010 Jul 15. PMID: 20637905
EvNO00084283
*Xu F, Wu H, Katritch V, Han GW, Jacobson KA, Gao ZG, Cherezov V, Stevens RC. (2011) Structure of an agonist-bound human A2A adenosine receptor. Science. Apr 15;332(6027):322-7. doi: 10.1126/science.1202793. Epub 2011 Mar 10. PMID: 21393508
HsCD00292954
HsCD00292958
HsCD00292950
HsCD00292945
HsCD00292939
HsCD00292915
HsCD00292914
*Bagaria A, Kumaran D, Burley SK, Swaminathan S. (2011) Structural basis for a ribofuranosyl binding protein: insights into the furanose specific transport. Proteins. Apr;79(4):1352-7. doi: 10.1002/prot.22965. Epub 2011 Feb 14. PMID: 21387413
HcCD00342063
*Das D, Hervé M, Feuerhelm J, Farr CL, Chiu HJ, Elsliger MA, Knuth MW, Klock HE, Miller MD, Godzik A, Lesley SA, Deacon AM, Mengin-Lecreulx D, Wilson IA. (2011) Structure and function of the first full-length murein peptide ligase (Mpl) cell wall recycling protein. PLoS One. Mar 18;6(3):e17624. doi: 10.1371/journal.pone.0017624. PMID: 21445265
PfCD00291233
* Mani R, Vorobiev S, Swapna GV, Neely H, Janjua H, Ciccosanti C, Xiao R, Acton TB, Everett JK, Hunt J, Montelione GT. (2011) Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold. J Struct Funct Genomics. Mar;12(1):27-32. Epub 2010 Dec 14. PMID: 21153711
*Ramelot TA, Smola MJ, Lee HW, Ciccosanti C, Hamilton K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Kennedy MA. (2011) Solution structure of 4'-phosphopantetheine - GmACP3 from Geobacter metallireducens: a specialized acyl carrier protein with atypical structural features and a putative role in lipopolysaccharide biosynthesis. Biochemistry. Mar 8;50(9):1442-53. Epub 2011 Feb 14. PMID: 21235239
*Kamat SS, Bagaria A, Kumaran D, Holmes-Hampton GP, Fan H, Sali A, Sauder JM, Burley SK, Lindahl PA, Swaminathan S, Raushel FM. (2011) Catalytic mechanism and three-dimensional structure of adenine deaminase. Biochemistry. Mar 22;50(11):1917-27. Epub 2011 Feb 4. PMID: 21247091
*Barb AW, Cort JR, Seetharaman J, Lew S, Lee HW, Acton T, Xiao R, Kennedy MA, Tong L, Montelione GT, Prestegard JH. (2011) Structures of domains I and IV from YbbR are representative of a widely distributed protein family. Protein Sci. Feb;20(2):396-405. doi: 10.1002/pro.571. Epub 2011 Jan 18. PMID: 21154411
DhCD00358128
*Kamat SS, Fan H, Sauder JM, Burley SK, Shoichet BK, Sali A, Raushel FM. (2011) Enzymatic deamination of the epigenetic base N-6-methyladenine. J Am Chem Soc. Feb 23;133(7):2080-3. Epub 2011 Jan 28. PMID: 21275375
*Aramini JM, Rossi P, Cort JR, Ma LC, Xiao R, Acton TB, Montelione GT. (2011) Solution NMR structure of the plasmid-encoded fimbriae regulatory protein PefI from Salmonella enterica serovar Typhimurium. Proteins. Jan;79(1):335-9. PMID: 20979070
NsCD00541071
*Xu Q, Eguchi T, Mathews II, Rife CL, Chiu HJ, Farr CL, Feuerhelm J, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Weekes D, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2010) Insights into substrate specificity of geranylgeranyl reductases revealed by the structure of digeranylgeranylglycerophospholipid reductase, an essential enzyme in the biosynthesis of archaeal membrane lipids. J Mol Biol. Dec 3;404(3):403-17. doi: 10.1016/j.jmb.2010.09.032. Epub 2010 Oct 1. PMID: 20869368
TaCD00087985
*Chaulk S, Lu J, Tan K, Arthur DC, Edwards RA, Frost LS, Joachimiak A, Glover JN. (2010) N. meningitidis 1681 is a member of the FinO family of RNA chaperones. RNA Biol. Nov-Dec;7(6):812-9. Epub 2010 Nov 1. PMID: 21045552
NmCD00584426
*Chien EY, Liu W, Zhao Q, Katritch V, Han GW, Hanson MA, Shi L, Newman AH, Javitch JA, Cherezov V, Stevens RC. (2010) Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist. Science. Nov 19;330(6007):1091-5. doi: 10.1126/science.1197410. PMID: 21097933
HsCD00416047
*Wu B, Chien EY, Mol CD, Fenalti G, Liu W, Katritch V, Abagyan R, Brooun A, Wells P, Bi FC, Hamel DJ, Kuhn P, Handel TM, Cherezov V, Stevens RC. (2010) Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists. Science. Nov 19;330(6007):1066-71. doi: 10.1126/science.1194396. Epub 2010 Oct 7. PMID: 20929726
HsCD00292912
HsCD00292917
HsCD00292922
HsCD00292940
HsCD00292941
HsCD00292912
HsCD00292917
HsCD00292922
HsCD00292940
HsCD00292941
*Xu Q, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Yeh A, Zhou J, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2010) Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron. Acta Crystallogr Sect F Struct Biol Cryst Commun. Oct 1;66(Pt 10):1297-305. doi: 10.1107/S1744309110023055. Epub 2010 Jul 31. PMID: 20944225
BtCD00452670
BtCD00324986
*Kim Y, Zhou M, Moy S, Morales J, Cunningham MA, Joachimiak A. (2010) High-resolution structure of the nitrile reductase QueF combined with molecular simulations provide insight into enzyme mechanism. J Mol Biol. Nov 19;404(1):127-37. doi: 10.1016/j.jmb.2010.09.042. Epub 2010 Sep 25. PMID: 20875425
VcCD00584771
*Chien EY, Liu W, Zhao Q, Katritch V, Han GW, Hanson MA, Shi L, Newman AH, Javitch JA, Cherezov V, Stevens RC. (2010) Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist. Science. Nov 19;330(6007):1091-5. doi: 10.1126/science.1197410. PMID: 21097933
HsCD00416047
*Bianchetti CM, Blouin GC, Bitto E, Olson JS, Phillips GN Jr. (2010) The structure and NO binding properties of the nitrophorin-like heme-binding protein from Arabidopsis thaliana gene locus At1g79260.1. Proteins. Mar;78(4):917-31. doi: 10.1002/prot.22617. PMID: 19938152
AtCD00313651
*Chen YH, Hu L, Punta M, Bruni R, Hillerich B, Kloss B, Rost B, Love J, Siegelbaum SA, Hendrickson WA. (2010) Homologue structure of the SLAC1 anion channel for closing stomata in leaves. Nature. Oct 28;467(7319):1074-80. doi: 10.1038/nature09487. PMID: 20981093
HiCD00340722
*Tan K, Tesar C, Wilton R, Keigher L, Babnigg G, Joachimiak A. (2010) Novel α-glucosidase from human gut microbiome: substrate specificities and their switch. FASEB J. Oct;24(10):3939-49. doi: 10.1096/fj.10-156257. Epub 2010 Jun 25. PMID: 20581222
RoCD00342297
*Mancia F, Love J. (2010) High-throughput expression and purification of membrane proteins. J Struct Biol. Oct;172(1):85-93. Epub 2010 Apr 13. PMID: 20394823
EvNO00091443
EvNO00304420
*Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wooley J, Wüthrich K, Wilson IA. (2010) The JCSG high-throughput structural biology pipeline. Acta Crystallogr Sect F Struct Biol Cryst Commun. Oct 1;66(Pt 10):1137-42. Epub 2010 Sep 30. PMID: 20944202
*Hall RS, Agarwal R, Hitchcock D, Sauder JM, Burley SK, Swaminathan S, Raushel FM. (2010) Discovery and structure determination of the orphan enzyme isoxanthopterin deaminase. Biochemistry. May 25;49(20):4374-82. PMID: 20415463
*Hall RS, Fedorov AA, Marti-Arbona R, Fedorov EV, Kolb P, Sauder JM, Burley SK, Shoichet BK, Almo SC, Raushel FM. (2010) The hunt for 8-oxoguanine deaminase. J Am Chem Soc. Feb 17;132(6):1762-3. PMID: 20088583
UnCD00430268
*Xu Q, Bateman A, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2010) Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain. J Mol Biol. Feb 12;396(1):31-46. doi: 10.1016/j.jmb.2009.11.006. Epub 2009 Nov 10. PMID: 19913036
SsCD00545615
*Xu Q, Traag BA, Willemse J, McMullan D, Miller MD, Elsliger MA, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chruszcz M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Grzechnik SK, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, Minor W, Mommaas AM, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Wang S, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, van Wezel GP. (2009) Structural and functional characterizations of SsgB, a conserved activator of developmental cell division in morphologically complex actinomycetes. J Biol Chem. Sep 11;284(37):25268-79. doi: 10.1074/jbc.M109.018564. Epub 2009 Jun 30. PMID: 19567872
TfCD00332036
*Xiang DF, Xu C, Kumaran D, Brown AC, Sauder JM, Burley SK, Swaminathan S, Raushel FM. (2009) Functional annotation of two new carboxypeptidases from the amidohydrolase superfamily of enzymes. Biochemistry. Jun 2;48(21):4567-76. PMID: 19358546
UnCD00430273
*Fox BG, Blommel PG. (2009) Autoinduction of protein expression. Curr Protoc Protein Sci. Apr;Chapter 5:Unit 5.23. PMID: 19365792
EvNO00084279
*Goren MA, Nozawa A, Makino S, Wrobel RL, Fox BG. (2009) Cell-free translation of integral membrane proteins into unilamelar liposomes. Methods Enzymol. 463:647-73. PMID: 19892197
EvNO00084283
EvNO00306667
*Goren MA, Fox BG. (2008) Wheat germ cell-free translation, purification, and assembly of a functional human stearoyl-CoA desaturase complex. Protein Expr Purif. 2008 Dec;62(2):171-8. Epub 2008 Aug 15 PMID: 18765284
EvNO00084283
*Zhang Y, Thiele I, Weekes D, Li Z, Jaroszewski L, Ginalski K, Deacon AM, Wooley J, Lesley SA, Wilson IA, Palsson B, Osterman A, Godzik A. (2009) Three-dimensional structural view of the central metabolic network of Thermotoga maritima. Science. Sep 18;325(5947):1544-9. doi: 10.1126/science.1174671. PMID: 19762644
TmCD00282355
TmCD00084798
TmCD00083921
TmCD00282153
TmCD00282192
*Bitto E, Bingman CA, Bittova L, Frederick RO, Fox BG, Phillips GN Jr. (2009) X-ray structure of Danio rerio secretagogin: A hexa-EF-hand calcium sensor. Proteins. 2009 Aug 1;76(2):477-83. doi: 10.1002/prot.22362. PMID: 19241471
DrCD00084239
*Berman HM, Westbrook JD, Gabanyi MJ, Tao W, Shah R, Kouranov A, Schwede T, Arnold K, Kiefer F, Bordoli L, Kopp J, Podvinec M, Adams PD, Carter LG, Minor W, Nair R, La Baer J. (2009) The protein structure initiative structural genomics knowledgebase. Nucleic Acids Res. Jan;37(Database issue):D365-8. Epub 2008 Nov 14.
*Xu Q, McMullan D, Abdubek P, Astakhova T, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Elsliger MA, Feuerhelm J, Hale J, Han GW, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Sri Krishna S, Kumar A, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Trame C, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2009) A structural basis for the regulatory inactivation of DnaA. J Mol Biol. Jan 16;385(2):368-80. doi: 10.1016/j.jmb.2008.10.059. Epub 2008 Oct 30. PMID: 19000695
SaCD00103804
*Jaakola VP, Griffith MT, Hanson MA, Cherezov V, Chien EY, Lane JR, Ijzerman AP, Stevens RC. (2008) The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.Science. Nov 21;322(5905):1211-7. doi: 10.1126/science.1164772. Epub 2008 Oct 2. PMID: 18832607
HsCD00292914
HsCD00292915
HsCD00292939
HsCD00292945
HsCD00292950
HsCD00292954
HsCD00292958
*Bitto E, Bingman CA, Bittova L, Kondrashov DA, Bannen RM, Fox BG, Markley JL, Phillips GN Jr. (2008) Structure of human J-type co-chaperone HscB reveals a tetracysteine metal-binding domain. J Biol Chem. Oct 31;283(44):30184-92. doi: 10.1074/jbc.M804746200. Epub 2008 Aug 19. PMID: 18713742
HsCD00333949
HsCD00310288
Tyagi R, Eswaramoorthy S, Burley SK, Raushel FM, Swaminathan S. (2008) A common catalytic mechanism for proteins of the HutI family. Biochemistry. May 20;47(20):5608-15. doi: 10.1021/bi800180g. Epub 2008 Apr 29. PMID: 18442260
UnCD00430274
*Madegowda M, Eswaramoorthy S, Burley SK, Swaminathan S. (2008) X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus. Proteins. May 1;71(2):534-40. doi: 10.1002/prot.21888. PMID: 18175317
BcCD00430220
* Hayes PL, Lytle BL, Volkman BF, Peterson FC. (2008) The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominantly unstructured protein. Protein Sci. Mar;17(3):571-6. doi: 10.1110/ps.073290408. PMID: 18287285
HsCD00383770
HsCD00396783
HsCD00396778
HsCD00396766
HsCD00297593
HsCD00297609
HsCD00305923
*Cherezov V, Rosenbaum DM, Hanson MA, Rasmussen SG, Thian FS, Kobilka TS, Choi HJ, Kuhn P, Weis WI, Kobilka BK, Stevens RC. (2007) High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor. Science. Nov 23;318(5854):1258-65. Epub 2007 Oct 25. PMID: 17962520
HsCD00292924
HsCD00292925
HsCD00292938
HsCD00292942
HsCD00292946
HsCD00292947
*Tyagi R, Kumaran D, Burley SK, Swaminathan S. (2007) X-ray structure of imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution. Proteins. Nov 15;69(3):652-8. PMID: 17640072
AtCD00383439
*Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK. (2007) Structural genomics of protein phosphatases. J Struct Funct Genomics. Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID: 18058037
HsCD00370061
*Bitto E, Bingman CA, Wesenberg GE, McCoy JG, Phillips GN Jr. (2007) Structure of aspartoacylase, the brain enzyme impaired in Canavan disease. Proc Natl Acad Sci U S A. Jan 9;104(2):456-61. Epub 2006 Dec 28. PMID: 17194761
HsCD00396795
*Schwarzenbacher R, McMullan D, Krishna SS, Xu Q, Miller MD, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, McPhillips TM, Morse AT, Quijano K, Spraggon G, Stevens RC, van den Bedem H, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2006) Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 A resolution reveals a new fold. Proteins. Oct 1;65(1):243-8. PMID: 16865707
TmCD00084776
TmCD00282188
*Shen N, Guo L, Yang B, Jin Y, Ding J. (2006) Structure of human tryptophanyl-tRNA synthetase in complex with tRNATrp reveals the molecular basis of tRNA recognition and specificity. Nucleic Acids Res. Jun 23;34(11):3246-58. Print 2006. PMID: 16798914
TmCD00089386
*Yang Z, Savchenko A, Yakunin A, Zhang R, Edwards A, Arrowsmith C, Tong L. (2003) Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643. J Biol Chem. Mar 7;278(10):8804-8. Epub 2002 Dec 21. PMID: 12496312
TmCD00085086
Publications citing or mentioning DNASU or the PSI:Biology-MR (does not include reviews or editorials)
* indicates publication from a PSI center
* Berman, H. M., Gabanyi, M. J., Groom, C. R., Johnson, J. E., Murshudov, G. N., Nicholls, R. A., Reddy, V., Schwede, T., Zimmerman, M. D., Westbrook, J. & Minor, W. (2015). Data to knowledge: how to get meaning from your result. IUCrJ 2. Volume 2 Part 1 doi:10.1107/S2052252514023306
Kamens J. (2014) Addgene: making materials sharing "science as usual". PLoS Biol. 2014 Nov 11;12(11):e1001991. doi: 10.1371/journal.pbio.1001991. eCollection 2014. PMID: 25387006
Kamens J. (2014) The Addgene repository: an international nonprofit plasmid and data resource. Nucleic Acids Res. 2014 Nov 11. pii: gku893. [Epub ahead of print] PMID: 25392412
Lourido, L., Diez, P., Dasilva, N., Gonzalez-Gonzalez, M., Ruiz-Romero, C., Blanco, F., Orfao, A., LaBaer, J. and Fuentes, M. (2014) In Marko-Varga, G. (ed.), Genomics and Proteomics for Clinical Discovery and Development. Springer Netherlands, Vol. 6, pp. 147-173.
Marx V. (2014) Plasmids: shopping in the age of plenty. Nat Methods. 2014 Jul 30;11(8):795-798. doi: 10.1038/nmeth.3034.
PMID: 25075905
Mohr SE, Hu Y, Kim K, Housden BE, Perrimon N. (2014) Resources for Functional Genomics Studies in Drosophila melanogaster. Genetics. 2014 Mar 20. [Epub ahead of print] PMID: 24653003
Khafizov K1, Madrid-Aliste C, Almo SC, Fiser A. (2014) Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative. Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3733-8. doi: 10.1073/pnas.1321614111. Epub 2014 Feb 24. PMID: 24567391
Zimmerman, Matthew D., et al. "Data management in the modern structural biology and biomedical research environment." Methods in molecular biology (Clifton, NJ) 1140 (2014): 1. PMID: 24590705
Elkins, Jonathan M. "Case Study—Structural Genomics and Human Protein Kinases." Methods in molecular biology (Clifton, NJ) 1140 (2014): 325. PMID: 24590728
Khafizov K, Madrid-Aliste C, Almo SC, Fiser A. (2014) Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative. Proc Natl Acad Sci U S A. 2014 Feb 24. [Epub ahead of print] PMID: 24567391
*Taichi E. Takasuka, Johnnie A. Walker, Lai F. Bergeman, Kirk A. Vander Meulen, Shin-ichi Makino, Nathaniel L. Elsen, Brian G. Fox (2014) Cell-Free Translation of Biofuel Enzymes. Methods in Molecular Biology Volume 1118, 2014, pp 71-95. PMID: 24395410
* Pieper U, Webb BM, Dong GQ, Schneidman-Duhovny D, Fan H, Kim SJ, Khuri N, Spill YG, Weinkam P, Hammel M, Tainer JA, Nilges M, Sali A. (2014) ModBase, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. Jan 1;42(1):D336-46. doi: 10.1093/nar/gkt1144. Epub 2013 Nov 23. PMID: 24271400
* Depietro PJ, Julfayev ES, McLaughlin WA. (2013) Quantification of the impact of PSI:Biology according to the annotations of the determined structures. BMC Struct Biol. Oct 21;13(1):24. [Epub ahead of print] PMID: 24139526
Geiling B, Vandal G, Posner AR, de Bruyns A, Dutchak KL, et al. (2013) A Modular Lentiviral and Retroviral Construction System to Rapidly Generate Vectors for Gene Expression and Gene Knockdown In Vitro and In Vivo. PLoS ONE 8(10): e76279. doi:10.1371/journal.pone.0076279 PMID: 24146852
Wolfson, W. (2013) Addgene: the bank that gives points for (plasmid) deposits. Chem Biol. Jul 25;20(7):857-8. doi: 10.1016/j.chembiol.2013.07.002. PMID: 23890002
Lee JR, Magee DM, Gaster RS, LaBaer J, Wang SX. (2013) Expert Rev Proteomics. Feb;10(1):65-75. doi: 10.1586/epr.12.67. PMID: 23414360
Kahl LJ, and Endy D. (2013) A survey of enabling technologies in synthetic biology. J Biol Eng. May 10;7(1):13. [Epub ahead of print] PMID: 23663447
Im H, Snyder M. (2013) Preparation of recombinant protein spotted arrays for proteome-wide identification of kinase targets. Curr Protoc Protein Sci. Apr;Chapter 27:Unit27.4. doi: 10.1002/0471140864.ps2704s72. PMID: 23546622
Festa F, Steel J, Bian X, Labaer J. (2013) High-throughput cloning and expression library creation for functional proteomics. Proteomics. Mar 4. doi: 10.1002/pmic.201200456. [Epub ahead of print] PMID: 23457047
Wilson ML, Cai Y, Hanlon R, Taylor S, Chevreux B, Setubal JC, Tyler BM, Peccoud J. (2013) Sequence verification of synthetic DNA by assembly of sequencing reads. Nucleic Acids Res. Jan 7;41(1):e25. doi: 10.1093/nar/gks908. Epub 2012 Oct 4. PMID: 23042248
Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ. (2013) Spanish human proteome project: dissection of chromosome 16. J Proteome Res. Jan 4;12(1):112-22. doi: 10.1021/pr300898u. Epub 2012 Dec 12. PMID: 23234512
Nilsson CL, Berven F, Selheim F, Liu H, Moskal JR, Kroes RA, Sulman EP, Conrad CA, Lang FF, Andrén PE, Nilsson A, Carlsohn E, Lilja H, Malm J, Fenyö D, Subramaniyam D, Wang X, Gonzales-Gonzales M, Dasilva N, Diez P, Fuentes M, Végvári Á, Sjödin K, Welinder C, Laurell T, Fehniger TE, Lindberg H, Rezeli M, Edula G, Hober S, Marko-Varga G. (2013) Chromosome 19 annotations with disease speciation: a first report from the Global Research Consortium. J Proteome Res. Jan 4;12(1):135-50. doi: 10.1021/pr3008607. Epub 2012 Dec 18. PMID: 23249167
Linshiz G, Goldberg A, Konry T, Hillson NJ. (2012) The fusion of biology, computer science, and engineering: towards efficient and successful synthetic biology. Perspect Biol Med. 2012;55(4):503-20. doi: 10.1353/pbm.2012.0044. PMID: 23502561
Ham TS, Dmytriv Z, Plahar H, Chen J, Hillson NJ, Keasling JD. (2012) Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools. Nucleic Acids Res. Oct;40(18):e141. doi: 10.1093/nar/gks531. Epub 2012 Jun 19. PMID: 22718978
Takulapalli BR, Qiu J, Magee DM, Kahn P, Brunner A, Barker K, Means S, Miersch S, Bian X, Mendoza A, Festa F, Syal K, Park JG, LaBaer J, Wiktor P. (2012) High density diffusion-free nanowell arrays. J Proteome Res. Aug 3;11(8):4382-91. Epub 2012 Jul 13. PMID: 22742968
Miersch S, Sidhu SS. (2012) Synthetic antibodies: Concepts, potential and practical considerations. Methods. Aug;57(4):486-98. doi: 10.1016/j.ymeth.2012.06.012. Epub 2012 Jun 27. PMID: 22750306
*Gifford LK, Carter LG, Gabanyi MJ, Berman HM, Adams PD. (2012) The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource. J Struct Funct Genomics. Jun;13(2):57-62. doi: 10.1007/s10969-012-9133-7. Epub 2012 Apr 6. PMID: 22527514
Bray JE. (2012) Target selection for structural genomics based on combining fold recognition and crystallisation prediction methods: application to the human proteome. J Struct Funct Genomics.
Mar;13(1):37-46. Epub 2012 Feb 22. PMID: 22354707
Durani V, Sullivan BJ, Magliery TJ. (2012) Simplifying protein expression with ligation-free, traceless and tag-switching plasmids. Protein Expr Purif. Sep;85(1):9-17. doi: 10.1016/j.pep.2012.06.007. Epub 2012 Jun 21. PMID: 22728767
Waugh DS (2011). An overview of enzymatic reagents for the removal of affinity tags. Protein Expr Purif. 2011 Dec;80(2):283-93. doi: 10.1016/j.pep.2011.08.005. Epub 2011 Aug 19. PMID: 21871965
Nicolini C, Sivozhelezov V , Bavastrello V, Bezzerra T , Scudieri D, Spera R and Pechkova E. (2011) Matrices for Sensors from Inorganic, Organic, and Biological Nanocomposites. Materials 4(8), 1483-1518; doi:10.3390/ma4081483
Qiu J, LaBaer J. (2011) Nucleic acid programmable protein array a just-in-time multiplexed protein expression and purification platform. Methods Enzymol. 500:151-63. doi: 10.1016/B978-0-12-385118-5.00009-8.PMID: 21943897
*Gabanyi MJ, Adams PD, Arnold K, Bordoli L, Carter LG, Flippen-Andersen J, Gifford L, Haas J, Kouranov A, McLaughlin WA, Micallef DI, Minor W, Shah R, Schwede T, Tao YP, Westbrook JD, Zimmerman M, Berman HM. (2011) The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. J Struct Funct Genomics. Jul;12(2):45-54. doi: 10.1007/s10969-011-9106-2. Epub 2011 Apr 7. PMID: 21472436
Miersch S, LaBaer J. (2011) Nucleic Acid programmable protein arrays: versatile tools for array-based functional protein studies. Curr Protoc Protein Sci. Apr; Chapter 27:Unit27.2.PMID: 21488044
Matarraz S, González-González M, Jara M, Orfao A, Fuentes M. (2011) New technologies in cancer. Protein microarrays for biomarker discovery. Clin Transl Oncol. Mar;13(3):156-61.PMID: 21421460
Anderson KS, Sibani S, Wallstrom G, Qiu J, Mendoza EA, Raphael J, Hainsworth E, Montor WR, Wong J, Park JG, Lokko N, Logvinenko T, Ramachandran N, Godwin AK, Marks J, Engstrom P, Labaer J. (2011) Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer. J Proteome Res. Jan 7;10(1):85-96. Epub 2010 Nov 23.
*Grabowski M, Chruszcz M, Zimmerman MD, Kirillova O, Minor W. (2009) Benefits of structural genomics for drug discovery research. Infect Disord Drug Targets. Nov;9(5):459-74.PMID: 20977275