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Publications

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Publications and patents referencing DNASU, the PSI:Biology-Materials Repository, and plasmids from the respository. Click the links below to go directly to a catagory of publications.


Publications written by DNASU and the PSI:Biology-Materials Repository

Seiler, C.Y., Park, J.G., Sharma, A., Hunter, P., Surapaneni, P., Sedillo, C., Field, J., Alger, R., Steel, J., Throop, A., Fiacco, M., and LaBaer, J. (2013) DNASU plasmid and PSI:Biology-Materials repositories: resources to accelerate biological research. Nucleic Acids Research doi: 10.1093/nar/gkt1060 PMID: 24225319

Cormier, C.Y., Park, J.G., Fiacco, M., Steel, J., Hunter, P., Kramer, J. Singla, R., Labaer, J. (2011). PSI:Biology-materials repository: a biologist's resource for protein expression plasmids. Journal of Structural and Functional Genomics. Jul;12(2):55-62. Epub 2011 Mar 1. PMID: 21360289

Cormier, C.Y., Mohr, S.E., Zuo, D., Hu, Y., Rolfs, A., Kramer, J., Taycher, E., Kelley, F., Fiacco, M., Turnbull, G., and LaBaer, J. (2010). Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community.  Nucleic Acids Research 38(Database issue): D743-9. PMID: 19906724

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Patents referencing DNASU

United States Patent Application 20130345118 A1
Matrix scaffold with antimicrobial activity, Published Dec 26, 2013
Marsha Rolle, Fioleda Prifti, Chris Malcuit, Terri Anne Camesano, Tanja Dominko
HsCD00357894

WIPO Patent Application WO/2013/063126
PROGRAMMABLE ARRAYS, Published May 2, 2013
ARIZONA BOARD OF REGENTS, a body corporate of the state of arizona, acting for and on behalf of ARIZONA STATE UNIVERSITY (1475 N. Scottsdale Road, Suite 200Scottsdale, AZ, 85257, US)

United States Patent Application 20130150259
BIOMARKERS FOR THE EARLY DETECTION OF BREAST CANCER, Published June 13, 2013
Labaer, Joshua (Chandler, AZ, US), Anderson, Karen Sue (Chestnut Hill, MA, US), Wallstrom, Garrick (Mesa, AZ, US), Sibani, Sahar (La Mesa, CA, US), Ramachandran, Niroshan (San Marcos, CA, US)  

United States Patent Application 20130085072
RECOMBINANT RENEWABLE POLYCLONAL ANTIBODIES, published April 4, 2013
Bradbury, Andrew M. (Santa Fe, NM, US); Kiss, Csaba (Los Alamos, NM, US); D'angelo, Sara (Los Alamos, NM, US); Ferrara, Fortunato (Los Alamos, NM, US); Naranjo, Leslie A. (Los Alamos, NM, US); Gaiotto, Tiziano (Los Alamos, NM, US)

WIPO Patent Application WO/2013/032891
COMPOSITIONS AND METHODS FOR THE RELIEF OF INHIBITION OF ALDEHYDE DECARBONYLASE, published March 7, 2013
SHANKLIN, John (4 Duchess Street, Shoreham, NY, 11786, US); ANDRE, Carl (165 South Ocean Avenue, Apt. 16Patchogue, NY, 11772, US)           

United States Patent Application 20120252691
MODIFIED NUCLEOTIDES METHODS AND KITS, published October 4, 2012
Etienne; Christopher L.; (Fitchburg, WI) ; Opperman; Kay K.; (Rockton, IL) ; Kaboord; Barbara J.; (Oregon, WI) ; Meier; Scott; (Rockford, IL) ; Schultz; Jean-Samuel; (Rockford, IL)

WIPO Patent Application WO/2012/040095
QSOX1 AS AN ANTI-NEOPLASTIC DRUG TARGET, Published March 29, 2012
LAKE, Douglas (10175 E. Corrine Dr, Scottsdale, AZ, 85260, US); KATCHMAN, Benjamin (606 West 15th Street, Tempe, AZ, 85281, US)

WIPO Patent Application WO/2012/021887A2
BIOMARKERS FOR THE EARLY DETECTION OF BREAST CANCER, Published February 16, 2012
LABAER, Joshua (5360 S. Miller Place, Chandler, AZ, 85249, US); ANDERSON, Karen, Sue (213 Reservoir Road, Chestnut Hill, MA, 02467, US); WALLSTROM, Garrick (2619 South Los Altos, Mesa, AZ, 85202, US); SIBANI, Sahar (259 Lantern Road, Apt. 38Revere, MA, 02151, US); RAMACHANDRAN, Niroshan (1523 Crescent Place, San Marcos, CA, 92078, US)

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Publications using specific plasmids from DNASU

Surana R, Wang S, Xu W, Jablonski SA, Weiner LM (2014) IL4 Limits the Efficacy of Tumor-Targeted Antibody Therapy in a Murine Model. Cancer Immunol Res. 2014 Nov;2(11):1103-12. doi: 10.1158/2326-6066.CIR-14-0103. Epub 2014 Sep 9. PMID: 25204776
HsCD0002235

Karla Camacho-Soto , Javier Castillo-Montoya , Blake Tye , Luca O. Ogunleye , and Indraneel Ghosh (2014) Small Molecule Gated Split-Tyrosine Phosphatases and Orthogonal Split-Tyrosine Kinases. J. Am. Chem. Soc., November 19, 2014. PMID: 25409264
HsCD00003675
HsCD00403679
HsCD00002513

Chen Z-j and Ai H-w (2014). A Highly Responsive and Selective Fluorescent Probe for Imaging Physiological Hydrogen Sulfide. Biochemistry Biochemistry, 2014, 53 (37), pp 5966–5974 PMID: 25141269
HsCD00002251

Ghoshal A and Ghosh SS. (2014) Expression, Purification, and Therapeutic Implications of Recombinant sFRP1. Appl Biochem Biotechnol. 2014 Nov 30. [Epub ahead of print] PMID: 25432334
HsCD00022108

Ham H, Woolery AR, Tracy C, Stenesen D, Krämer H, Orth K. (2014) Unfolded protein response-regulated dFic reversibly AMPylates BiP during endoplasmic reticulum homeostasis. J Biol Chem. 2014 Nov 13. pii: jbc.M114.612515. [Epub ahead of print] PMID: 25395623

Yu X, Woolery AR, Luong P, Hao YH, Grammel M, Westcott N, Park J, Wang J, Bian X, Demirkan G, Hang HC, Orth K, LaBaer J. (2014) Copper-catalyzed azide-alkyne cycloaddition (click chemistry)-based Detection of Global Pathogen-host AMPylation on Self-assembled Human Protein Microarrays. Mol Cell Proteomics. 2014 Nov;13(11):3164-76. doi: 10.1074/mcp.M114.041103. Epub 2014 Jul 29. PMID: 25073739
GTPase clones

Anderson KS, Cramer DW, Sibani S, Wallstrom G, Wong J, Park J, Qiu J, Vitonis A, LaBaer J. (2014) An Autoantibody Signature for the Serologic Detection of Ovarian Cancer. J Proteome Res. 2014 Nov 3. [Epub ahead of print] PMID: 25365139
NAPPA Clones

Wen J, Xiao J, Rahdar M, Choudhury BP, Cui J, Taylor GS, Esko JD, Dixon JE.  (2014) Xylose phosphorylation functions as a molecular switch to regulate proteoglycan biosynthesis. Proc Natl Acad Sci U S A. 2014 Oct 20. pii: 201417993. [Epub ahead of print] PMID: 25331875
HsCD00515937
HsCD00295197

Brown LM, Rogers KE, Aroonsakool N, McCammon JA, Insel PA. (2014) Allosteric Inhibition of Epac: COMPUTATIONAL MODELING AND EXPERIMENTAL VALIDATION TO IDENTIFY ALLOSTERIC SITES AND INHIBITORS. J Biol Chem. 2014 Oct 17;289(42):29148-57. doi: 10.1074/jbc.M114.569319. Epub 2014 Sep 2. PMID: 25183009
HsCD00442122

Woolery AR, Yu X, LaBaer J, Orth K. (2014) AMPylation of Rho GTPases subverts multiple host signaling processes. J Biol Chem. 2014 Oct 9. pii: jbc.M114.601310. [Epub ahead of print] PMID: 25301945
GTPase plasmids

Shang J, Huang X, Du Z. (2014) The FP domains of PI31 and Fbxo7 have the same protein fold but very different modes of protein–protein interaction. J Biomol Struct Dyn. 2014 Sep 30:1-11. [Epub ahead of print] PMID: 25266262
HsCD00082371
HsCD00404128

Prados-Rosales R, Carreño LJ, Batista-Gonzalez A, Baena A, Venkataswamy MM, Xu J, Yu X, Wallstrom G, Magee DM, LaBaer J, Achkar JM, Jacobs WR Jr, Chan J, Porcelli SA, Casadevall A. (2014) Mycobacterial Membrane Vesicles Administered Systemically in Mice Induce a Protective Immune Response to Surface Compartments of Mycobacterium tuberculosis. MBio. 2014 Sep 30;5(5). pii: e01921-14. doi: 10.1128/mBio.01921-14. PMID: 25271291
Mycobacterium tuberculosis plasmids

Boswell-Casteel RC, Johnson JM, Duggan KD, Tsutsui Y, Hays FA. (2014) Overproduction and biophysical characterization of human HSP70 proteins. Protein Expr Purif. 2014 Sep 27. pii: S1046-5928(14)00210-1. doi: 10.1016/j.pep.2014.09.013. [Epub ahead of print] PMID: 25266791
HsCD00080058
HsCD00040011
HsCD00041118

Brown LM, Rogers KE, Aroonsakool N, McCammon JA, Insel PA. (2014)  Allosteric Inhibition of Epac: Computational Modeling and Experimental Validation to Identify Allosteric Sites and Inhibitors. J Biol Chem. 2014 Sep 2. pii: jbc.M114.569319. [Epub ahead of print] PMID: 25183009
HsCD00442122

Poirier V, Bach H, Av-Gay Y. (2014) Mycobacterium tuberculosis Promotes Anti-Apoptotic Activity of the Macrophage by PtpA-Dependent Dephosphorylation of Host GSK3α. . J Biol Chem. 2014 Sep 3. pii: jbc.M114.582502. [Epub ahead of print] PMID: 25187516
HsCD00077034

Zhou J, Deng Z, Chen Y, Gao Y, Wu D, Zhu G, Li L, Song W, Wang X, Wu K, He D. (2014) Overexpression of FABP7 promotes cell growth and predicts poor prognosis of clear cell renal cell carcinoma. Urol Oncol. 2014 Sep 2. pii: S1078-1439(14)00278-6. doi: 10.1016/j.urolonc.2014.08.001. [Epub ahead of print] PMID: 25192834
HsCD00445349

Heirbaut M, Beelen S, Strelkov SV, Weeks SD. (2014) Dissecting the Functional Role of the N-Terminal Domain of the Human Small Heat Shock Protein HSPB6. PLoS One. 2014 Aug 26;9(8):e105892. doi: 10.1371/journal.pone.0105892. eCollection 2014. PMID: 25157403
HsCD00357339

Chen ZJ, Ai HW. (2014) A Highly Responsive and Selective Fluorescent Probe to Image Physiological Hydrogen Sulfide. Biochemistry. 2014 Aug 20. [Epub ahead of print] PMID: 25141269
HsCD00002251

Petrosyan A, Holzapfel MS, Muirhead DE, Cheng PW. (2014) Restoration of Compact Golgi Morphology in Advanced Prostate Cancer Enhances Susceptibility to Galectin-1-induced Apoptosis by Modifying Mucin O-glycan Synthesis. Mol Cancer Res. 2014 Aug 1. pii: molcanres.0291.2014. [Epub ahead of print] PMID: 25086069
HsCD00521134

Satpute-Krishnan P, Ajinkya M, Bhat S, Itakura E, Hegde RS, Lippincott-Schwartz J. (2014) ER Stress-Induced Clearance of Misfolded GPI-Anchored Proteins via the Secretory Pathway. Cell. 2014 Jul 31;158(3):522-33. doi: 10.1016/j.cell.2014.06.026. PMID: 25083867
HsCD00044796
HsCD00042793

Sin C, Li H, Crawford DA. (2014) Transcriptional Regulation by FOXP1, FOXP2, and FOXP4 Dimerization. J Mol Neurosci. 2014 Jul 16. [Epub ahead of print] PMID: 25027557
HsCD00297105
HsCD00079580

Wolter JM, Kotagama K, Pierre-Bez AC, Firago M, Mangone M. (2014) 3'LIFE: a functional assay to detect miRNA targets in high-throughput. Nucleic Acids Res. 2014 Jul 29. pii: gku626. [Epub ahead of print] PMID: 25074381
EvNO00601503
EvNO00601504

Subramonian D, Raghunayakula S, Olsen JV, Beningo KA, Paschen W, Zhang XD. (2014) Analysis of Changes in SUMO-2/3 Modification during Breast Cancer Progression and Metastasis. J Proteome Res. 2014 Jul 29. [Epub ahead of print] PMID: 25072996
HsCD00076329

Yu X, Woolery AR, Luong P, Hao YH, Grammel M, Westcott N, Park J, Wang J, Bian X, Demirkan G, Hang HC, Orth K, LaBaer J. (2014) Click chemistry-based detection of global pathogen-host AMPylation on self-assembled human protein microarrays. Mol Cell Proteomics. 2014 Jul 29. pii: mcp.M114.041103. [Epub ahead of print] PMID: 25073739
NAPPA Clones

Cox N, Pilling D, Gomer RH. (2014) Distinct Fcγ Receptors Mediate the Effect of Serum Amyloid P on Neutrophil Adhesion and Fibrocyte Differentiation. J Immunol. 2014 Jul 14. pii: 1400281. [Epub ahead of print] PMID: 25024390
HsCD00005702
HsCD00042799

Valkevich EM, Sanchez NA, Ge Y, Strieter ER. (2014) Middle-Down Mass Spectrometry Enables Characterization of Branched Ubiquitin Chains. Biochemistry. 2014 Jul 14. [Epub ahead of print] PMID: 25023374
HsCD00356713

Renaudin X, Guervilly JH, Aoufouchi S, Rosselli F. (2014) Proteomic analysis unveils a FANCA-modulated neddylation pathway involved in CXCR5 membrane targeting and cell mobility. J Cell Sci. 2014 Jul 11. pii: jcs.150706. [Epub ahead of print] PMID: 25015289
HsCD00305489

Kirschke E, Goswami D, Southworth D, Griffin PR, Agard DA. (2014) Glucocorticoid Receptor Function Regulated by Coordinated Action of the Hsp90 and Hsp70 Chaperone Cycles. Cell. 2014 Jun 19;157(7):1685-97. doi: 10.1016/j.cell.2014.04.038. PMID: 24949977
HsCD00081592

Kastrati I, Canestrari E, Frasor J. (2014) PHLDA1 expression is controlled by an estrogen receptor-NFκB-miR-181 regulatory loop and is essential for formation of ER+ mammospheres. Oncogene. 2014 Jun 23. doi: 10.1038/onc.2014.180. [Epub ahead of print] PMID: 24954507
HsCD00434827

Bragazzi NL, Spera R, Pechkova E, Nicolini C (2014) NAPPA-Based Nanobiosensors for the Detection of Proteins and of Protein-Protein Interactions Relevant to Cancer. J Carcinog & Mutagen 5:166. doi: 10.4172/2157-2518.1000166

Aretz J, Wamhoff E, Hanske J, Heymann D and Rademacher C.  (2014) Computational and experimental prediction of human C-type lectin receptor druggability. Front. Immunol. 5:323. doi:10.3389/fimmu.2014.00323
HsCD00507041

Jarrett SG, Horrell EM, Christian PA, Vanover JC, Boulanger MC, Zou Y, D'Orazio JA. (2014) PKA-Mediated Phosphorylation of ATR Promotes Recruitment of XPA to UV-Induced DNA Damage. Mol Cell. 2014 Jun 19;54(6):999-1011. doi: 10.1016/j.molcel.2014.05.030. PMID: 24950377
HsCD00045284

Schulte T, Löfling J, Mikaelsson C, Kikhney A, Hentrich K, Diamante A, Ebel C, Normark S, Svergun D, Henriques-Normark B, Achour A. (2014) The basic keratin 10-binding domain of the virulence-associated pneumococcal serine-rich protein PsrP adopts a novel MSCRAMM fold. Open Biol. 2014 Jan 15;4:130090. doi: 10.1098/rsob.130090. PMID: 24430336
HsCD00045373

Ryu Y, Hall CP, Reynolds CP, Kang MH. (2014) Caspase-dependent Mcl-1 cleavage and effect of Mcl-1 phosphorylation in ABT-737-induced apoptosis in human acute lymphoblastic leukemia cell lines. Exp Biol Med (Maywood). 2014 Jun 20. pii: 1535370214538745. [Epub ahead of print] PMID: 24951472
HsCD00039084

Yu, X., Bian, X., Throop, A., Song, L., Del Moral, L., Park, J., Seiler, C., Fiacco, M., Steel, J., Hunter, P., Saul, J., Wang, J., Qiu, J., Pipas, J.M., and LaBaer, J. (2014) Exploration of Panviral Proteome: High-Throughput Cloning and Functional Implications in Virus-host Interactions. Theranostics 4(8): 808-822. doi: 10.7150/thno.8255

Brady OA, Zhou X, and Hu F. (2014) Regulated intramembrane proteolysis of the frontotemporal lobar degeneration (FTLD) risk factor,TMEM106B, bySignal Peptide Peptidase-like 2a (SPPL2a). J Biol Chem. 2014 May 28. pii: jbc.M113.515700. [Epub ahead of print] PMID: 24872421
HsCD00021697

Feng J, De Jesus PD, Su V, Han S, Gong D, Wu NC, Tian Y, Li X, Wu TT, Chanda SK, Sun R. (2014) RIOK3 is an adaptor protein required for IRF3-mediated antiviral type I interferon production. J Virol. May 7. [Epub ahead of print] PMID: 24807708
HsCD00038007

Saul J, Petritis B, Sau S, Rauf F, Gaskin M, Ober-Reynolds B, Mineyev I, Magee M, Chaput J, Qiu J, Labaer J. (2014) Development of a full-length human protein production pipeline. Protein Sci. 2014 May 8. doi: 10.1002/pro.2484. [Epub ahead of print] PMID: 24806540

Samasilp P, Lopin K, Chan SA, Ramachandran R, Smith C. (2014) Syndapin 3 Modulates Fusion Pore Expansion in Mouse Neuroendocrine Chromaffin Cells. Am J Physiol Cell Physiol. 2014 Feb 5. [Epub ahead of print] PMID: 24500282
HsCD00045184

Yang Yang, Guan Wang, Xiaolan Huang and Zhihua Dua. (2014) Expression, purification and crystallization of the SKICH domain of human TAX1BP1. Acta Crystallographica Section F Structural Biology Communications
HsCD00300502

Vörös J, Urbanek A, Rautureau GJ, O'Connor M, Fisher HC, Ashcroft AE, Ferguson N. (2014) Large-scale production and structural and biophysical characterizations of the human hepatitis B virus polymerase. J Virol. 2014 Mar;88(5):2584-99. doi: 10.1128/JVI.02575-13. Epub 2013 Dec 18. PMID: 24352439
HsCD00301392
HsCD00045312

Skibinski A, Breindel JL, Prat A, Galván P, Smith E, Rolfs A, Gupta PB, Labaer J, Kuperwasser C. (2014) The Hippo Transducer TAZ Interacts with the SWI/SNF Complex to Regulate Breast Epithelial Lineage Commitment. Cell Rep. 2014 Mar 5. pii: S2211-1247(14)00152-1. doi: 10.1016/j.celrep.2014.02.038. [Epub ahead of print]  PMID: 24613358
Transcription Factor Collection

Ito YA, Goping IS, Berry F, Walter MA. (2014)  Dysfunction of the stress-responsive FOXC1 transcription factor contributes to the earlier-onset glaucoma observed in Axenfeld-Rieger syndrome patients. Cell Death Dis. 2014 Feb 20;5:e1069. doi: 10.1038/cddis.2014.8. PMID: 24556684
HsCD00044509

Selyunin AS, Reddick LE, Weigele BA, Alto NM. (2014) Selective Protection of an ARF1-GTP Signaling Axis by a Bacterial Scaffold Induces Bidirectional Trafficking Arrest. Cell Rep. 2014 Feb 25. pii: S2211-1247(14)00074-6. doi: 10.1016/j.celrep.2014.01.040. [Epub ahead of print] PMID: 24582959
HsCD00520592

Morizono K, Chen IS. (2014) The role of phosphatidylserine receptors in enveloped virus infection. J Virol. 2014 Jan 29. [Epub ahead of print] PMID: 24478428
HsCD00288806
HsCD00082870
HsCD00350658
HsCD00288629
HsCD00041758

Bose SK, Kim H, Meyer K, Wolins N, Davidson NO, Ray R. (2014) FORKHEAD BOX TRANSCRIPTION FACTOR REGULATION AND LIPID ACCUMULATION BY HEPATITIS C VIRUS. J Virol. 2014 Jan 29. [Epub ahead of print] PMID: 24478438
HsCD00330288

Schulte T, Löfling J, Mikaelsson C, Kikhney A, Hentrich K, Diamante A, Ebel C, Normark S, Svergun D, Henriques-Normark B, Achour A. (2014)  The basic keratin 10-binding domain of the virulence-associated pneumococcal serine-rich protein PsrP adopts a novel MSCRAMM fold. Open Biol. Jan 15;4(1):130090. doi: 10.1098/rsob.130090. PMID: 24430336
HsCD00045373

Brodie SA, Li G, El-Kommos A, Kang H, Ramalingam SS, Behera M, Gandhi K, Kowalski J, Sica GL, Khuri FR, Vertino PM, Brandes JC. (2014) Class I HDACs are mediators of smoke-carcinogen induced stabilization of DNMT1 and serve as promising targets for chemoprevention of lung cancer.  Cancer Prev Res (Phila).  Jan 17. [Epub ahead of print] PMID: 24441677
HsCD00080462

Kincaid RP, Burke JM, Cox JC, de Villiers EM, Sullivan CS. (2013) A Human Torque Teno Virus Encodes a MicroRNA That Inhibits Interferon Signaling. PLoS Pathog. Dec;9(12):e1003818. doi: 10.1371/journal.ppat.1003818. Epub 2013 Dec 19. PMID: 24367263
HsCD00433976

Renaud SJ, Kubota K, Rumi MA, Soares MJ. (2013) The FOS Transcription Factor Family Differentially Controls Trophoblast Migration and Invasion. J Biol Chem. Dec 30. [Epub ahead of print] PMID: 24379408
HsCD00434995

Zhu F, Gamboa M, Farruggio AP, Hippenmeyer S, Tasic B, Schüle B, Chen-Tsai Y, Calos MP. (2013) DICE, an efficient system for iterative genomic editing in human pluripotent stem cells. Nucleic Acids Res. Dec 4. [Epub ahead of print] PMID: 24304893
HsCD00039453
HsCD00001270

Young E, Zheng ZY, Wilkins AD, Jeong HT, Li M, Lichtarge O, Chang EC. (2013) Regulation of Ras localization and cell transformation by evolutionarily conserved palmitoyltransferases.  Mol Cell Biol. 2013 Nov 18. [Epub ahead of print]  PMID: 24248599
HsCD00295927

Potts MB, Kim HS, Fisher KW, Hu Y, Carrasco YP, Bulut GB, Ou YH, Herrera-Herrera ML, Cubillos F, Mendiratta S, Xiao G, Hofree M, Ideker T, Xie Y, Huang LJ, Lewis RE, MacMillan JB, White MA. (2013) Using functional signature ontology (FUSION) to identify mechanisms of action for natural products. Sci Signal. 2013 Oct 15;6(297):ra90. doi: 10.1126/scisignal.2004657. PMID: 24129700
HsCD00082595
HsCD00043011

Jiyuan Ke, Kaleeckal G. Harikumar, Clara Erice, Chen Chen, Xin Gu, Liren Wang, Naomi Parker, Zhihong Cheng, Wenqing Xu, Bart O. Williams, Karsten Melcher, Laurence J. Miller and H. Eric Xu (2013). Structure and function of Norrin in assembly and activation of a Frizzled 4–Lrp5/6 complex. Genes & Dev. 27: 2305-2319 doi:10.1101/gad.228544.113 PMID: 24186977
HsCD00045716

Berre S, Gaudin R, Cunha de Alencar B, Desdouits M, Chabaud M, Naffakh N, Rabaza-Gairi M, Gobert FX, Jouve M, Benaroch P. (2013) CD36-specific antibodies block release of HIV-1 from infected primary macrophages and its transmission to T cells. J Exp Med. 2013 Oct 21. [Epub ahead of print] PMID: 24145510
HsCD00045106

Goichberg P, Kannappan R, Cimini M, Bai Y, Sanada F, Sorrentino A, Signore S, Kajstura J, Rota M, Anversa P, Leri A. (2013) Age-associated defects in EphA2 signaling impair the migration of human cardiac progenitor cells. Circulation. 2013 Nov 12;128(20):2211-23. doi: 10.1161/CIRCULATIONAHA.113.004698. Epub 2013 Oct 18. PMID: 24141256
HsCD00038225

Plummer JT, Evgrafov OV, Bergman MY, Friez M, Haiman CA, Levitt P, Aldinger KA. (2013) Transcriptional regulation of the MET receptor tyrosine kinase gene by MeCP2 and sex-specific expression in autism and Rett syndrome. Transl Psychiatry. 2013 Oct 22;3:e316. doi: 10.1038/tp.2013.91. PMID: 24150225
HsCD00081627

Miersch S, Bian X, Wallstrom G, Sibani S, Logvinenko T, Wasserfall CH, Schatz D, Atkinson M, Qiu J, Labaer J. (2013)  Serological autoantibody profiling of type 1 diabetes by protein arrays. J Proteomics. 2013 Oct 19. pii: S1874-3919(13)00530-7. doi: 10.1016/j.jprot.2013.10.018. [Epub ahead of print] PMID: 24148850
Various pANT7_cGST plasmids

Prokop JW, Rauscher Iii FJ, Peng H, Liu Y, Araujo FC, Watanabe I, Reis FM, Milsted A. (2013) MAS promoter regulation: a role of Sry and tyrosine nitration of the KRAB domain of ZNF274 as a feedback mechanism. Clin Sci (Lond). Oct 15. [Epub ahead of print] PMID: 24128372
HsCD00329522

Hildick-Smith GJ, Cooney JD, Garone C, Kremer LS, Haack TB, Thon JN, Miyata N, Lieber DS, Calvo SE, Akman HO, Yien YY, Huston NC, Branco DS, Shah DI, Freedman ML, Koehler CM, Italiano JE Jr, Merkenschlager A, Beblo S, Strom TM, Meitinger T, Freisinger P, Donati MA, Prokisch H, Mootha VK, Dimauro S, Paw BH. (2013) Macrocytic Anemia and Mitochondriopathy Resulting from a Defect in Sideroflexin. Am J Hum Genet. Oct 9. pii: S0002-9297(13)00424-2. doi: 10.1016/j.ajhg.2013.09.011. [Epub ahead of print] PMID: 24119684
HsCD00352377

Mohan S, Glushakov AV, Decurnou A, Narumiya S, Doré S. (2013)  Contribution of PGE2 EP1 receptor in hemin-induced neurotoxicity. Front Mol Neurosci. Oct 7;6:31. PMID: 24109429
HsCD00305296
HsCD00403541
HsCD00305663
HsCD00304370

Shang J, Wang G, Yang Y, Huang X, Du Z. (2013) Expression, purification and crystallization of the FP domain of the human F-box protein Fbxo7. Acta Crystallogr Sect F Struct Biol Cryst Commun. Oct 1;69(Pt 10):1097-1099. Epub 2013 Sep 28. PMID: 24100556
HsCD00082371

Mohit Narwal, Jarkko Koivunen, Teemu Haikarainen, Ezeogo Obaji, Ongey Elvis, Legala, Harikanth Venkannagari, Päivi Joensuu, Taina Pihlajaniemi , and Lari Lehtiö. (2013) Discovery of Tankyrase Inhibiting Flavones with Increased Potency and Isoenzyme Selectivity.  J Med Chem. Oct 11. [Epub ahead of print]PMID: 24116873
HsCD00302726

Davda D, El Azzouny MA, Tom CT, Hernandez JL, Majmudar JD, Kennedy RT, Martin BR. (2013) Profiling targets of the irreversible palmitoylation inhibitor 2-bromopalmitate. ACS Chem Biol. 2013 Sep 20;8(9):1912-7. doi: 10.1021/cb400380s. Epub 2013 Jul 25. PMID: 23844586
HsCD00301260
HsCD00515835

Wellensiek BP, Larsen AC, Flores J, Jacobs BL, Chaput JC. (2013) A leader sequence capable of enhancing RNA expression and protein synthesis in mammalian cells. Protein Sci. 2013 Aug 1. doi: 10.1002/pro.2325. [Epub ahead of print] PMID: 23908110

Goel RK, Miah S, Black K, Kalra N, Dai C, Lukong KE. (2013) The unique N-terminal region of SRMS regulates enzymatic activity and phosphorylation of its novel substrate Dok1. FEBS J. Jul 3. doi: 10.1111/febs.12420. [Epub ahead of print] PMID: 23822091
HsCD00356544

Nchoutmboube JA, Viktorova EG, Scott AJ, Ford LA, Pei Z, et al. (2013) Increased Long Chain acyl-Coa Synthetase Activity and Fatty Acid Import Is Linked to Membrane Synthesis for Development of Picornavirus Replication Organelles. PLoS Pathog 9(6): e1003401. doi:10.1371/journal.ppat.1003401 PMID: 23762027
HsCD00078974

Kampa-Schittenhelm KM, Heinrich MC, Akmut F, Rasp KH, Illing B, Döhner H, Döhner K, Schittenhelm MM. (2013) Cell cycle-dependent activity of the novel dual PI3K-MTORC1/2 inhibitor NVP-BGT226 in acute leukemia. Mol Cancer. 2013 May 24;12(1):46. [Epub ahead of print] PMID: 23705826
HsCD00038790

Soetedjo L, Glover DA and Jin H. (2013) Targeting of vasoactive intestinal peptide receptor 2, VPAC2, a secretin family G-protein coupled receptor, to primary cilia. Open Biology Posted Online
May 24, 2013; doi: 10.1242/​bio.20134747 PMID: 23862016
HsCD00515712

Emrick D, Ravichandran A, Gosai J, Lu S, Gordon DM, Smith L. (2013) The Antifungal Occidiofungin Triggers an Apoptotic Mechanism of Cell Death in Yeast. J Nat Prod. May 24;76(5):829-38. doi: 10.1021/np300678e. Epub 2013 May 14. PMID: 23672235
HsCD00005948

Yu X, Wallstrom G, Magee DM, Qiu J, Mendoza DE, Wang J, Bian X, Graves M, Labaer J. (2013) Quantifying antibody binding on protein microarrays using microarray nonlinear calibration. Biotechniques. May;54(5):257-64. doi: 10.2144/000114028. PMID: 23662896

Choi HK, Yoo JY, Jeong MH, Park SY, Shin DM, Jang SW, Yoon HG, Choi KC. (2013) Protein Kinase A phosphorylates NCoR to enhance its nuclear translocation and repressive function in human prostate cancer cells. J Cell Physiol. Jun;228(6):1159-65. doi: 10.1002/jcp.24269. PMID: 23129261
PKA
HsCD00005977

Kim E, Lu HC, Zoghbi HY, Song JJ. (2013) Structural basis of protein complex formation and reconfiguration by polyglutamine disease protein Ataxin-1 and Capicua. Genes Dev.  Mar 15;27(6):590-5. doi: 10.1101/gad.212068.112. PMID: 23512657
MmCD00083297

Kampa-Schittenhelm KM, Heinrich MC, Akmut F, Döhner H, Döhner K, Schittenhelm MM. (2013) Quizartinib (AC220) is a potent second generation class III tyrosine kinase inhibitor that displays a distinct inhibition profile against mutant-FLT3, -PDGFRA and -KIT isoforms. Mol Cancer. Mar 7;12(1):19. [Epub ahead of print] PMID: 23497317
HsCD00038790

Filippova EV, Weston LA, Kuhn ML, Geissler B, Gehring AM, Armoush N, Adkins CT, Minasov G, Dubrovska I, Shuvalova L, Winsor JR, Lavis LD, Satchell KJ, Becker DP, Anderson WF, Johnson RJ. (2013) J Biol Chem. 2013 Apr 12;288(15):10522-35. doi: 10.1074/jbc.M112.446625. Epub 2013 Feb 19. PMID: 23430251
HsCD00043610

Okamoto Y, Bernstein JD, Shikano S. (2013) Role of C-terminal Membrane-Proximal Basic Residues in Cell Surface Trafficking of HIV Coreceptor GPR15. J Biol Chem. Feb 19. [Epub ahead of print] PMID: 23430259
HsCD00440165
HsCD00440316
HsCD00446753
HsCD00305574
HsCD00305341
HsCD00041423
HsCD00040142
HsCD00045364

French JB, Zhao H, An S, Niessen S, Deng Y, Cravatt BF, Benkovic SJ. (2013) Hsp70/Hsp90 chaperone machinery is involved in the assembly of the purinosome. Proc Natl Acad Sci U S A. Feb 12;110(7):2528-33. doi: 10.1073/pnas.1300173110. Epub 2013 Jan 28. PMID: 23359685
HsCD00045312
HsCD00301392
HsCD00082147
HsCD00075966
HsCD00081553

Bansal N, Zhang M, Bhaskar A, Itotia P, Lee E, Shlyakhtenko LS, Lam TT, Fritz A, Berezney R, Lyubchenko YL, Stafford WF, Thapar R. (2013) Assembly of the SLIP1-SLBP Complex on Histone mRNA Requires Heterodimerization and Sequential Binding of SLBP Followed by SLIP1. Biochemistry Jan 22;52(3):520-36. doi: 10.1021/bi301074r. Epub 2013 Jan 11. PMID: 23286197

Brooks CL, Morrison M, Lemieux MJ. (2013) Rapid expression screening of eukaryotic membrane proteins in pichia pastoris. Protein Science Jan 22. doi: 10.1002/pro.2223. [Epub ahead of print] PMID: 23339074
HsCD00288168
ScCD00009389

Aras S, Pak O, Sommer N, Finley R Jr, Hüttemann M, Weissmann N, Grossman LI. (2013) Oxygen-dependent expression of cytochrome c oxidase subunit 4-2 gene expression is mediated by transcription factors RBPJ, CXXC5 and CHCHD2. Nucleic Acids Research 2013 Jan 8. [Epub ahead of print] PMID: 23303788
HsCD00074691

Chakrabarty A, Bhola NE, Sutton C, Ghosh R, Kuba MG, Dave B, Chang JC, Arteaga CL. (2013) Trastuzumab-Resistant Cells Rely on a HER2-PI3K-FoxO-Survivin Axis and Are Sensitive to PI3K Inhibitors. Cancer Research Feb 1;73(3):1190-200. doi: 10.1158/0008-5472.CAN-12-2440. Epub 2012 Nov 29. PMID: 23204226
HsCD00074849

Manzano-Román R, Díaz-Martín V, González-González M, Matarraz S, Álvarez-Prado AF, LaBaer J, Orfao A, Pérez-Sánchez R, Fuentes M. (2012)  Self-assembled protein arrays from an Ornithodoros moubata salivary gland expression library. Journal of Proteome Research Dec 7;11(12):5972-82. doi: 10.1021/pr300696h. Epub 2012 Nov 20. PMID: 23140423
pANT7_cGST clones

Patel D, Schultz LW, Umland TC. (2012)  Influenza A polymerase subunit PB2 possesses overlapping binding sites for polymerase subunit PB1 and human MAVS proteins. Virus Research  Dec 12. pii: S0168-1702(12)00465-0. doi: 10.1016/j.virusres.2012.12.003. [Epub ahead of print] PMID: 23246644
HsCD00296475

Wang J, Barker K, Steel J, Park J, Saul J, Festa F, Wallstrom G, Yu X, Bian X, Anderson KS, Figueroa J, Labaer J, Qiu J. (2012) A versatile protein microarray platform enabling antibody profiling against denatured proteins. Proteomics Clin Appl. Oct 2. doi: 10.1002/prca.201200062. [Epub ahead of print] PMID: 23027520
pANT7_cGST clones

Festa F, Rollins SM, Vattem K, Hathaway M, Lorenz P, Mendoza EA, Yu X, Qiu J, Kilmer G, Jensen P, Webb B, Ryan ET, LaBaer J. (2012) Robust microarray production of freshly expressed proteins in a human milieu. Proteomics Clin Appl.  Oct 2. doi: 10.1002/prca.201200063. [Epub ahead of print] PMID: 23027544
pANT7_cGST clones

Yoo JY, Choi HK, Choi KC, Park SY, Ota I, Yook JI, Lee YH, Kim K, Yoon HG. (2012) Nuclear hormone receptor corepressor promotes esophageal cancer cell invasion by transcriptional repression of interferon-γ-inducible protein 10 in a casein kinase 2-dependent manner. Mol Biol Cell.  Aug;23(15):2943-54. Epub 2012 Jun 6. PMID: 22675025
HsCD00005662

Kluza J, Corazao-Rozas P, Touil Y, Jendoubi M, Maire C, Guerreschi P, Jonneaux A, Ballot C, Balayssac S, Valable S, Corroyer-Dulmont A, Bernaudin M, Malet-Martino M, de Lassalle EM, Maboudou P, Formstecher P, Polakowska R, Mortier L, Marchetti P. (2012) Inactivation of the HIF-1α/PDK3 Signaling Axis Drives Melanoma toward Mitochondrial Oxidative Metabolism and Potentiates the Therapeutic Activity of Pro-Oxidants. Cancer Research.  Oct 1;72(19):5035-47. doi: 10.1158/0008-5472.CAN-12-0979. Epub 2012 Aug 3. PMID: 22865452
HsCD00038044

Tagliabracci VS, Engel JL, Wen J, Wiley SE, Worby CA, Kinch LN, Xiao J, Grishin NV, Dixon JE. (2012) Secreted kinase phosphorylates extracellular proteins that regulate biomineralization. Science. Jun 1;336(6085):1150-3. doi: 10.1126/science.1217817. Epub 2012 May 10. PMID: 22582013
MmCD00313240

Gibson DS, Qiu J, Mendoza EA, Barker K, Rooney ME, Labaer J. (2012) Circulating and synovial antibody profiling of juvenile arthritis patients by nucleic acid programmable protein arrays. Arthritis Res Ther. Apr 17;14(2):R77.  PMID: 22510425
pANT7_cGST clones

Bislev SL, Kusebauch U, Codrea MC, Beynon RJ, Harman VM, Røntved CM, Aebersold R, Moritz RL, Bendixen E. (2012) Quantotypic properties of QconCAT peptides targeting bovine host response to Streptococcus uberis. J Proteome Res. Mar 2;11(3):1832-43. Epub 2012 Feb 8. PMID: 22256911

Griffiths S, Byrne RT, Antson AA, Whelan F. (2012)  Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of human dihydrouridine synthase. Acta Crystallogr Sect F Struct Biol Cryst Commun. Mar 1;68(Pt 3):333-6. Epub 2012 Feb 22. PMID: 22442237
HsCD00303989

Gorbacheva MA, Yarosh AG, Dorovatovskii PV, Rakitina TV, Boiko KM, Korzhenevskii DA, Lipkin AV, Popov VO and Shumilin IA. (2012)  A new approach to studying the structural and functional properties of proteins with unknown functions. Russian Journal of Bioorganic Chemistry.  Jan-Feb 38(1): 83-88. PMID: 22792712
HsCD00288489

Stergachis AB, MacLean B, Lee K, Stamatoyannopoulos JA, MacCoss MJ. (2011) Rapid empirical discovery of optimal peptides for targeted proteomics. Nature Methods Nov 6;8(12):1041-3. doi: 10.1038/nmeth.1770. PMID: 22056677
pANT7_cGST clones

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Publications using or referencing PSI:Biology-MR Plasmids

Elshahawi SI, Ramelot TA, Seetharaman J, Chen J, Singh S, Yang Y, Pederson K, Kharel MK, Xiao R, Lew S, Yennamalli RM, Miller MD, Wang F, Tong L, Montelione GT, Kennedy MA, Bingman CA, Zhu H, Phillips GN Jr, Thorson JS. (2014) Structure-guided functional characterization of enediyne self-sacrifice resistance proteins, CalU16 and CalU19. ACS Chem Biol. 2014 Oct 17;9(10):2347-58. doi: 10.1021/cb500327m. Epub 2014 Aug 13. PMID: 25079510
MeCD000597015

Ticak T, Kountz DJ, Girosky KE, Krzycki JA, Ferguson DJ Jr (2014). A nonpyrrolysine member of the widely distributed trimethylamine methyltransferase family is a glycine betaine methyltransferase. Proc Natl Acad Sci U S A. 2014 Oct 13. pii: 201409642. [Epub ahead of print] PMID: 25313086
DhCD00291496

Driggers CM, Hartman SJ, Karplus PA. (2014) Structures of - and Gln-type bacterial cysteine dioxygenase homologs. Protein Sci. 2014 Oct 11. doi: 10.1002/pro.2587. [Epub ahead of print] PMID: 25307852
BsCD00530862

Gong Z1, Kessans SA, Song L, Dörner K, Lee HH, Meador LR, LaBaer J, Hogue BG, Mor TS, Fromme P. (2014) Recombinant expression, purification and biophysical characterization of the transmembrane and membrane proximal domains of HIV-1 gp41. Protein Sci. 2014 Aug 23. doi: 10.1002/pro.2540. [Epub ahead of print] PMID: 25155369
EvNO00304415

*Bruno AE, Ruby AM, Luft JR, Grant TD, Seetharaman J, Montelione GT, Hunt JF, Snell EH.  (2014) Comparing chemistry to outcome: the development of a chemical distance metric, coupled with clustering and hierarchal visualization applied to macromolecular crystallography. PLoS One. 2014 Jun 27;9(6):e100782. doi: 10.1371/journal.pone.0100782. eCollection 2014. PMID: 24971458
BfCD00627674

Manjasettya BA, Chancec MR, Burley SK, Panjikarf S, Almo SC. (2014) Crystal structure of Clostridium acetobutylicum aspartate kinase (CaAk): An important allosteric enzyme for amino acids production. Biotechnology Reports Volume 3, September 2014, Pages 73–85. PMID: 25170437
CaCD00423555

Harbers M. (2014) Wheat Germ Systems for Cell-Free Protein Expression. FEBS Lett. Jun 12. pii: S0014-5793(14)00471-2. doi: 10.1016/j.febslet.2014.05.061. [Epub ahead of print] PMID: 24931374
Wheat Germ Expression Vectors

Liu EY, Russ J, Wu K, Neal D, Suh E, McNally AG, Irwin DJ, Van Deerlin VM, Lee EB. (2014)  C9orf72 hypermethylation protects against repeat expansion-associated pathology in ALS/FTD. Acta Neuropathol. 2014 May 8. [Epub ahead of print] PMID: 24806409
EvNO00085130

Hauke Drechsler, Toni McHugh, Martin R Singleton, Nicholas J Carter, Andrew D McAinsh. (2014) The Kinesin-12 Kif15 is a processive track-switching tetramer. March 25, 2014 eLife 2014;3:e01724  http://dx.doi.org/10.7554/eLife.01724 PMID: 24668168
EvNO00085126

Cragle C, Macnicol AM. (2014) Musashi-directed translational activation of target mRNAs is mediated by the poly[A] polymerase, Germline Development-2.  J Biol Chem. 2014 Mar 18. [Epub ahead of print] PMID: 24644291
MmCD00382513

Hilde Lysvand, Lars Hagen, Lidija Klubick, Geir Slupphaug, Ole-Jan Iversen (2014) Psoriasis pathogenesis — Pso p27 is generated from SCCA1 with chymase. http://dx.doi.org/10.1016/j.bbadis.2014.02.005 PMID: 24560885
HsCD00343153

Stark JL, Mehla K, Chaika N, Acton TB, Xiao R, Singh PK, Montelione GT, Powers R. (2014) The Structure and Function of Human DnaJ Homolog Subfamily A Member 1 (DNAJA1) and Its Relationship to Pancreatic Cancer. Biochemistry. 2014 Feb 10. [Epub ahead of print] PMID: 24512202

Gall DL, Kim H, Lu F, Donohue TJ, Noguera DR, Ralph J. (2014) Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway. J Biol Chem. 2014 Feb 7. [Epub ahead of print] PMID: 24509858
TvCD00084286

Guest Editors: Alessandro Paiardini, Barbara Cellini, Ashley M. Buckle, and Roberto Contestabile . PLP-Dependent Enzymes. BioMed Research International Volume 2014 (2014), Article ID 856076, 2 pages http://dx.doi.org/10.1155/2014/856076 PMID: 24527459
CdCD00289761

Bo Kong, and Grace L. Guo. (2014) Soluble Expression of Disulfide Bond Containing Proteins FGF15 and FGF19 in the Cytoplasm of Escherichia coli. PLOS One. DOI: 10.1371/journal.pone.0085890 PMID: 24465767
TvCD00084286
EvNO00085133

Tatyana A. Lyakhova, Jefferson D. Knight. (2013) The C2 domains of granuphilin are high-affinity sensors for plasma membrane lipids. Chem Phys Lipids. Oct 31. pii: S0009-3084(13)00137-0. doi: 10.1016/j.chemphyslip.2013.10.009. [Epub ahead of print] PMID: 24184645
HsCD00321956

Octavia Y. Goodwin, Maggie S. Thomasson, Aaron J. Lin, Michelle M. Sweeney, Megan A. Macnaughtan (2013) E. coli sabotages the in vivo production of O-linked β-N-acetylglucosamine-modified proteins, Journal of Biotechnology, Available online 16 October 2013, http://dx.doi.org/10.1016/j.jbiotec.2013.10.008. PMID: 24140293
HsCD00331895

Barba M, Dutoit R, Legrain C, Labedan B. (2013) Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism. BMC Syst Biol. Oct 5;7(1):99. [Epub ahead of print] PMID: 24093154
EcCD00311947

Alessandra Astegno, Alejandro Giorgetti, Alessandra Allegrini, Barbara Cellini, and Paola Dominici. (2013) Characterization of C-S Lyase from C. diphtheriae: A Possible Target for New Antimicrobial Drugs. BioMed Research International. Volume 2013 (2013), Article ID 701536, 13 pages PMID: 24106714
CdCD00289761

Da Fonseca I, Kizjakina K, Sobrado P. (2013) UDP-galactopyranose mutases from Leishmania species that cause 4 visceral and cutaneous leishmaniasis. Arch Biochem Biophys. Sep 3. pii: S0003-9861(13)00257-9. doi: 10.1016/j.abb.2013.08.014. [Epub ahead of print] PMID: 24012809
EvNO00085126

Andre C, Kim SW, Yu XH, Shanklin J. (2013) Fusing catalase to an alkane-producing enzyme maintains enzymatic activity by converting the inhibitory byproduct H2O2 to the cosubstrate O2. Proc Natl Acad Sci U S A.  Feb 19;110(8):3191-6. doi: 10.1073/pnas.1218769110. Epub 2013 Feb 7. PMID: 23391732
PpCD00092409

Liu J, Li F, Rozovsky S. (2013) The intrinsically disordered membrane protein selenoprotein s is a reductase in vitro. Biochemistry. May 7;52(18):3051-61. doi: 10.1021/bi4001358. Epub 2013 Apr 24. PMID: 23566202
TvCD00084286

Thompson J, Pikis A, Rich J, Hall BG, Withers SG. (2013) α-Galacturonidase(s): A new class of Family 4 glycoside hydrolases with strict specificity and a unique CHEV active site motif. FEBS Lett. Mar 18;587(6):799-803. doi: 10.1016/j.febslet.2013.02.004. Epub 2013 Feb 14. PMID: 23416295
BsCD00292418

Xu A, Desai AM, Brenner SE, Kirsch JF. (2013) A continuous fluorescence assay for the characterization of Nudix hydrolases. Anal Biochem. Jun 15;437(2):178-84. doi: 10.1016/j.ab.2013.02.023. Epub 2013 Mar 7. PMID: 23481913
MmCD00291907

Singh S, Chang A, Helmich KE, Bingman CA, Wrobel RL, Beebe ET, Makino SI, Aceti DJ, Dyer K, Hura GL, Sunkara M, Morris AJ, Phillips GN, Thorson JS. (2013) Structural and functional characterization of CalS11, the TDPrhamnose 3’-O-methyltransferase involved in calicheamicin biosynthesis. ACS Chem Biol.  May 10. [Epub ahead of print] PMID: 23662776
EvNO00084283

Das D, Lee WS, Grant JC, Chiu HJ, Farr CL, Vance J, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Kornfeld S, Wilson IA. (2013)  Structure and function of the DUF2233 domain in bacteria and in the human mannose 6-phosphate uncovering enzyme. J Biol Chem. Apr 9. [Epub ahead of print] PMID: 23572527
BoCD00384454

Deka RK, Brautigam CA, Liu WZ, Tomchick DR, Norgard MV. (2013) The TP0796 lipoprotein of Treponema pallidum is a bimetal-dependent FAD pyrophosphatase with a potential role in flavin homeostasis. J Biol Chem. Feb 27. [Epub ahead of print] PMID: 23447540
EcCD00385238

Durmaz E, Kuyucak S, Sezerman UO. (2013) Modifying the catalytic preference of tributyrin in Bacillus thermocatenulatus lipase through in-silico modeling of enzyme-substrate complex.  Protein Eng Des Sel. Feb 18. [Epub ahead of print] PMID: 23424251
EvNO00084271

Jarecki BW, Makino S, Beebe ET, Fox BG, Chanda B. (2013) Function of Shaker potassium channels produced by cell-free translation upon injection into Xenopus oocytes. Sci Rep.;3:1040. doi: 10.1038/srep01040. Epub 2013 Jan 8. PMID: 23301161
EvNO00306667

Schaefer SA, Dong M, Rubenstein RP, Wilkie WA, Bahnson BJ, Thorpe C, Rozovsky S. (2013) (77)Se enrichment of proteins expands the biological NMR toolbox. J Mol Biol. Jan 23;425(2):222-31. doi: 10.1016/j.jmb.2012.11.011. Epub 2012 Nov 15. PMID: 23159557
TvCD00084286

Dutoit R, Brandt N, Legrain C, Bauvois C. (2013) Functional characterization of two M42 aminopeptidases erroneously annotated as cellulases. PLoS One 7(11):e50639. doi: 10.1371/journal.pone.0050639. Epub 2012 Nov 30. PMID: 23226342
TmCD00089984

Hedge MK, Gehring AM, Adkins CT, Weston LA, Lavis LD, Johnson RJ. (2012) The structural basis for the narrow substrate specificity of an acetyl esterase from Thermotoga maritima. Biochim Biophys Acta Sep;1824(9):1024-30. doi: 10.1016/j.bbapap.2012.05.009. Epub 2012 Jun 1. PMID: 22659119
TmCD00083900

Mishra S, Bhagavat R, Chandra N, Vijayarangan N, Rajeswari H, Ajitkumar P. (2012) Cloning, expression, purification, and biochemical characterisation of the FIC motif containing protein of Mycobacterium tuberculosis. Protein Expr Purif. Nov;86(1):58-67. doi: 10.1016/j.pep.2012.08.020. Epub 2012 Sep 13. PMID: 22982230
EvNO00084265

Fang H, Caranto JD, Mendoza R, Taylor AB, Hart PJ, Kurtz DM Jr. (2012) Histidine ligand variants of a flavo-diiron protein: effects on structure and activities. J Biol Inorg Chem. Sep 19. [Epub ahead of print] PMID: 22990880
TmCD00089997

 J, Srinivasan P, Pham DN, and Rozovsky S. (2012) Expression and purification of the membrane enzyme selenoprotein K.  Protein Expr Purif. Nov;86(1):27-34. doi: 10.1016/j.pep.2012.08.014. Epub 2012 Aug 31. PMID: 22963794
TvCD00084286

Steere AN, Roberts SE, Byrne SL, Dennis Chasteen N, Bobst CE, Kaltashov IA, Smith VC, MacGillivray RT, Mason AB. (2010) Properties of a homogeneous C-lobe prepared by introduction of a TEV cleavage site between the lobes of human transferrin. Protein Expr Purif. Jul;72(1):32-41. doi: 10.1016/j.pep.2010.01.008. Epub 2010 Jan 11. PMID: 20064616
TvCD00084286

Wang L, Huang H, Nguyen HH, Allen KN, Mariano PS, Dunaway-Mariano D. (2010) Divergence of biochemical function in the HAD superfamily: D-glycero-D-manno-heptose-1,7-bisphosphate phosphatase (GmhB). Biochemistry. Feb 16;49(6):1072-81. doi: 10.1021/bi902018y. PMID: 20050615
MlCD00090897

Hillmann F, Riebe O, Fischer RJ, Mot A, Caranto JD, Kurtz DM Jr, Bahl H. (2009) Reductive dioxygen scavenging by flavo-diiron proteins of Clostridium acetobutylicum.  FEBS Lett. Jan 5;583(1):241-5. doi: 10.1016/j.febslet.2008.12.004. Epub 2008 Dec 11. PMID: 19084524
TmCD00085043

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Publications citing plasmids deposited to DNASU or the PSI:Biology-MR

Qingping Xu2, Dominique Mengin-Lecreulx , Delphine Patin4, Joanna C. Grant5, Hsiu-Ju Chiu, Lukasz Jaroszewski, Mark W. Knuth5, Adam Godzik7, Scott A. Lesley8, Marc-André Elsliger, Ashley M. Deacon, Ian A. Wilson. (2014) Structure-Guided Functional Characterization of DUF1460 Reveals a Highly Specific NlpC/P60 Amidase Family. Dec 2;22(12):1799-809. doi: 10.1016/j.str.2014.09.018. Epub 2014 Nov 20. PMID: 25465128
BuCD00332345

Troy G. Hammerstrom, Lori B. Horton, Michelle C. Swick, Andrzej Joachimiak, Jerzy Osipiuk and Theresa M. Koehler (2014) Crystal structure of Bacillus anthracis virulence regulator AtxA and effects of phosphorylated histidines on multimerization and activity. DOI: 10.1111/mmi.12867 PMID: 25402841

Fabio Parmeggiani, Po-Ssu Huang, Sergey Vorobiev, Rong Xiao, Keunwan Park, Silvia Caprari, Min Su, Seetharaman Jayaraman, Lei Mao, Haleema Janjua, Gaetano T. Montelione, John Hunt, David Baker. (2014) A general computational approach for repeat protein design. J Mol Biol. 2014 Nov 14. pii: S0022-2836(14)00582-8. doi: 10.1016/j.jmb.2014.11.005. [Epub ahead of print] PMID: 25451037
SoCD00331040

Nilsson CL, Mostovenko E, Lichti CF, Ruggles K, Fenyo D, Rosenbloom KR, Hancock WS, Paik YK, Omenn GS, LaBaer J, Kroes RA, Uhlén M, Hober S, Vegvari A, Andrén PE, Sulman EP, Lang FF, Fuentes M, Carlsohn E, Emmett MR, Moskal JR, Berven FS, Fehniger TE, Marko-Varga G. (2014) Use of ENCODE Resources to Characterize Novel Proteoforms and Missing Proteins in the Human Proteome. J Proteome Res. 2014 Nov 4. [Epub ahead of print]  PMID: 25369122

* Elshahawi SI, Ramelot TA, Seetharaman J, Chen J, Singh S, Yang Y, Pederson K, Kharel MK, Xiao R, Lew S, Yennamalli RM, Miller MD, Wang F, Tong L, Montelione GT, Kennedy MA, Bingman CA, Zhu H, Phillips GN, Thorson JS. (2014) Structure-guided functional characterization of enediyne self-sacrifice resistance proteins CalU16 and CalU19. ACS Chem Biol. 2014 Jul 31. [Epub ahead of print] PMID: 25079510
MeCD000597015

* Korczynska M, Xiang DF, Zhang Z, Xu C, Narindoshvili T, Kamat SS, Williams HJ, Chang SS, Kolb P, Hillerich B, Sauder JM, Burley SK, Almo SC, Swaminathan S, Shoichet BK, Raushel FM. (2014) Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate. Biochemistry. 2014 Jul 22;53(28):4727-38. doi: 10.1021/bi500595c. Epub 2014 Jul 9. PMID: 24955762
MsCD00628064

* Eletsky A, Michalska K, Houliston S, Zhang Q, Daily MD, Xu X, Cui H, Yee A, Lemak A, Wu B, Garcia M, Burnet MC4, Meyer KM, Aryal UK, Sanchez O, Ansong C, Xiao R, Acton TB, Adkins JN, Montelione GT, Joachimiak A, Arrowsmith CH, Savchenko A, Szyperski T, Cort JR. (2014) Structural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO. PLoS One. 2014 Jul 10;9(7):e101787. doi: 10.1371/journal.pone.0101787. eCollection 2014. PMID: 25010333
StCD00385027
StCD00385032

*Pulavarti SV, Huang YJ, Pederson K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Szyperski T. (2014) Solution NMR structures of immunoglobulin-like domains 7 and 12 from obscurin-like protein 1 contribute to the structural coverage of the human cancer protein interaction network. J Struct Funct Genomics. 2014 Jul 3. [Epub ahead of print] PMID: 24989974
HsCD00649973

* Xu X, Pulavarti SV, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. (2014) Solution NMR structures of homeodomains from human proteins ALX4, ZHX1, and CASP8AP2 contribute to the structural coverage of the Human Cancer Protein Interaction Network. J Struct Funct Genomics. 2014 Jun 19. [Epub ahead of print] PMID: 24941917
HsCD00650855

*Li J, Zhuo M, Pei L, Rajagopal M, Yu AS. (2014) Comprehensive cysteine-scanning mutagenesis reveals Claudin-2 pore-lining residues with different intrapore locations. J Biol Chem. Mar 7;289(10):6475-84. doi: 10.1074/jbc.M113.536888. Epub 2014 Jan 16. PMID: 24436330
Plasmids from TJMP

*Pulavarti SV1, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. (2014) Polypeptide backbone, Cβ and methyl group resonance assignments of the 24 kDa plectin repeat domain 6 from human protein plectin. Biomol NMR Assign. 2014 Apr 11. [Epub ahead of print] PMID: 24722902
HsCD00585037

*Rajagopalan S, Wang 2, Yu K, Kuzin AP, Richter F, Lew S, Miklos AE, Matthews ML, Seetharaman J, Su M, Hunt JF, Cravatt BF, Baker D. (2014) Design of activated serine-containing catalytic triads with atomic-level accuracy. Nat Chem Biol. 2014 Apr 6. doi: 10.1038/nchembio.1498. [Epub ahead of print] PMID: 24705591

*Makowska-Grzyska, Magdalena, et al. "Protein Production for Structural Genomics Using E. coli Expression." Methods in molecular biology (Clifton, NJ) 1140 (2014): 89. PMID: 24590711

Makino S, Beebe ET, Markley JL, Fox BG. (2014) Cell-free protein synthesis for functional and structural studies. Methods Mol Biol. 1091:161-78. doi: 10.1007/978-1-62703-691-7_11. PMID: 24203331

Renato Bruni and Brian Kloss (2013) High-Throughput Cloning and Expression of Integral Membrane Proteins in Escherichia coli. Current Protocls in Protein Science. Nov 5; Unit 29.6, DOI: 10.1002/0471140864.ps2906s74 PMID: 24510647
EvNO00304420
EvNO00084271
EvNO00340964
EvNO00091443

Nicole Monroe, Han Han, Malgorzata D. Gonciarz, Debra M. Eckert, Mary Anne Karren, Frank G. Whitby, Wesley I. Sundquist, Christopher P. Hill, The oligomeric state of the active Vps4 AAA ATPase, Journal of Molecular Biology, Available online 23 October 2013, ISSN 0022-2836, http://dx.doi.org/10.1016/j.jmb.2013.09.043. PMID: 24161953

* Netra Joshi, Eric K. Hoobler, Steven Perry, Giovanni Diaz, Brian Grant Fox, and Theodore Russell Holman. (2013). Kinetic and Structural Investigations into the allosteric and pH effect on Substrate Specificity of Human Epithelial 15-Lipoxygenase-2. Biochemistry  
EvNO00306669

*Das D, Hervé M, Elsliger MA, Kadam RU, Grant J, Chiu HJ, Knuth MW, Klock HE, Miller MD, Godzik A, Lesley SA, Deacon AM, Mengin-Lecreulx D, Wilson IA. (2013) Structure and function of a novel LD-carboxypeptidase A involved in peptidoglycan recycling. J Bacteriol. Oct 11. [Epub ahead of print] PMID: 24123814
NaCD00087837

*Odokonyero D, Ragumani S, Swaminathan S, Lopez MS, Bonanno JB, Ozerova ND, Woodard DR, Machala BW, Burley SK, Almo SC, Glasner ME. Divergent Evolution of Ligand Binding in the o-Succinylbenzoate Synthase Family. (2013) Biochemistry. Sep 24. [Epub ahead of print] PMID: 24060347
TfCD00336395

*Eschenfeldt WH, Makowska-Grzyska M, Stols L, Donnelly MI, Jedrzejczak R, Joachimiak A. (2013) New LIC vectors for production of proteins from genes containing rare codons. J Struct Funct Genomics. 2013 Sep 22. [Epub ahead of print] PMID: 24057978
EvNO00599463
EvNO00599464
EvNO00599483
EvNO00599484
EvNO00450865
EvNO00599485
EvNO00599486
EvNO00599504
EvNO00599523
EvNO00450863

*Qingping Xu, Hsiu-Ju Chiu, Carol L. Farr, Lukasz Jaroszewski, Mark W. Knuth, Mitchell D. Miller, Scott A. Lesley, Adam Godzik, Marc-Andr´e Elsliger, Ashley M. Deacon, Ian A. Wilson. (2013) Structures of a bifunctional cell-wall hydrolase CwlT containing a novel bacterial lysozyme and an NlpC/P60 DL-endopeptidase. Journal of Molecular Biology. PMID: 24051416
SaCD00328273
CdCD00085319

*Pulavarti SV, He Y, Feldmann EA, Eletsky A, Acton TB, Xiao R, Everett JK, Montelione GT, Kennedy MA, Szyperski T. (2013) Solution NMR structures provide first structural coverage of the large protein domain family PF08369 and complementary structural coverage of dark operative protochlorophyllide oxidoreductase complexes. J Struct Funct Genomics. 2013 Aug 21. [Epub ahead of print] PMID: 23963952
CtCD00536401
NsCD00338239

*Xu Q, Grant J, Chiu HJ, Farr CL, Jaroszewski L, Knuth MW, Miller MD, Lesley SA, Godzik A, Elsliger MA, Deacon and AM, Wilson IA. (2013) Crystal structure of a member of a novel family of dioxygenases (PF10014) reveals a conserved cupin fold and active site. Proteins.  Jul 15. doi: 10.1002/prot.24362. [Epub ahead of print] PMID: 23852666
MpCD00325753

*Bianchetti CM, Harmann CH, Takasuka TE, Hura GL, Dyer K, Fox BG. (2013) Fusion of Dioxygenase and Lignin-binding Domains in a Novel Secreted Enzyme from Cellulolytic Streptomyces sp. SirexAA-E. J Biol Chem. Jun 21;288(25):18574-87. doi: 10.1074/jbc.M113.475848. Epub 2013 May 7. PMID: 23653358
EvNO00306669

*Gabrielsen M, Wołosewicz K, Zawadzka A, Kossakowski J, Nowak G, Wolak M, Stachowicz K, Siwek A, Ravna AW, Kufareva I, Kozerski L, Bednarek E, Sitkowski J, Bocian W, Abagyan R, Bojarski AJ, Sylte I, Chilmonczyk Z. (2013) Synthesis, antidepressant evaluation and docking studies of long-chain alkylnitroquipazines as serotonin transporter inhibitors. Chem Biol Drug Des. Jun;81(6):695-706. doi: 10.1111/cbdd.12116. Epub 2013 Apr 11. PMID: 23574807
HsCD00292947
HsCD00292946
HsCD00292942
HsCD00292938
HsCD00292925
HsCD00292924

*Michalska K, Tan K, Li H, Hatzos-Skintges C, Bearden J, Babnigg G, Joachimiak A. (2013) GH1-family 6-P-β-glucosidases from human microbiome lactic acid bacteria. Acta Crystallogr D Biol Crystallogr. Mar;69(Pt 3):451-63. doi: 10.1107/S0907444912049608. Epub 2013 Feb 16. PMID: 23519420
SmCD00454274
LpCD00454237

* Rossi P, Barbieri CM, Aramini JM, Bini E, Lee HW, Janjua H, Xiao R, Acton TB, Montelione GT. (2013) Structures of apo- and ssDNA-bound YdbC from Lactococcus lactis uncover the function of protein domain family DUF2128 and expand the single-stranded DNA-binding domain proteome. Nucleic Acids Res. Feb 1;41(4):2756-68. doi: 10.1093/nar/gks1348. Epub 2013 Jan 8. PMID: 23303792
LlCD00385692

*Froese DS, Forouhar F, Tran TH, Vollmar M, Kim YS, Lew S, Neely H, Seetharaman J, Shen Y, Xiao R, Acton TB, Everett JK, Cannone G, Puranik S, Savitsky P, Krojer T, Pilka ES, Kiyani W, Lee WH, Marsden BD, von Delft F, Allerston CK, Spagnolo L, Gileadi O, Montelione GT, Oppermann U, Yue WW, Tong L. (2013) Crystal structures of malonyl-coenzyme a decarboxylase provide insights into its catalytic mechanism and disease-causing mutations. Structure. Jun 18. pii: S0969-2126(13)00159-7. doi: 10.1016/j.str.2013.05.001. [Epub ahead of print] PMID: 23791943
RvCD00339101
RpCD00591508

*Mills JL, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. (2013) Solution NMR structure of the helicase associated domain BVU_0683 (627–691) from Bacteroides vulgatus provides first structural coverage for protein domain family PF03457 and indicates domain binding to DNA. J Struct Funct Genomics. Mar;14(1):19-24. doi: 10.1007/s10969-012-9148-0. Epub 2012 Nov 16. PMID: 23160728
BvCD00536157

*Bianchetti CM, Harmann CH, Takasuka TE, Hura GL, Dyer K, Fox BG. (2013) Fusion of dioxygenase and lignin-binding domains in a novel secreted enzyme from cellulolytic Streptomyces sp. SirexAA-E. J Biol Chem. 2013 May 7. [Epub ahead of print] PMID: 23653358
EvNO00306669

Skalicky JJ, Arii J, Wenzel DM, Stubblefield WM, Katsuyama A, Uter NT, Bajorek M, Myszka DG, Sundquist WI. J (2012) Interactions of the human LIP5 regulatory protein with endosomal sorting complexes required for transport.  Biol Chem. Dec 21;287(52):43910-26. doi: 10.1074/jbc.M112.417899. Epub 2012 Oct 26. PMID: 23105106

*Richter F, Blomberg R, Khare SD, Kiss G, Kuzin AP, Smith AJ, Gallaher J, Pianowski Z, Helgeson RC, Grjasnow A, Xiao R, Seetharaman J, Su M, Vorobiev S, Lew S, Forouhar F, Kornhaber GJ, Hunt JF, Montelione GT, Tong L, Houk KN, Hilvert D, Baker D. (2012) Computational design of catalytic dyads and oxyanion holes for ester hydrolysis. J Am Chem Soc.  Oct 3;134(39):16197-206. doi: 10.1021/ja3037367. Epub 2012 Sep 21. PMID: 22871159

*Ramelot TA, Rossi P, Forouhar F, Lee HW, Yang Y, Ni S, Unser S, Lew S, Seetharaman J, Xiao R, Acton TB, Everett JK, Prestegard JH, Hunt JF, Montelione GT, Kennedy MA. (2012) Structure of a specialized acyl carrier protein essential for lipid a biosynthesis with very long-chain Fatty acids in open and closed conformations. Biochemistry. Sep 18;51(37):7239-49. Epub 2012 Sep 7. PMID: 22876860
RpCD00339419

*Feldmann EA, Seetharaman J, Ramelot TA, Lew S, Zhao L, Hamilton K, Ciccosanti C, Xiao R, Acton TB, Everett JK, Tong L, Montelione GT, Kennedy MA. (2012) Solution NMR and X-ray crystal structures of Pseudomonas syringae Pspto_3016 from protein domain family PF04237 (DUF419) adopt a "double wing" DNA binding motif. J Struct Funct Genomics. Sep;13(3):155-62. Epub 2012 Aug 3. PMID: 22865330
PsCD00338285

*Wang C, Jiang Y, Ma J, Wu H, Wacker D, Katritch V, Han GW, Liu W, Huang XP, Vardy E, McCorvy JD, Gao X, Zhou XE, Melcher K, Zhang C, Bai F, Yang H, Yang L, Jiang H, Roth BL, Cherezov V, Stevens RC, Xu HE. (2013) Structural basis for molecular recognition at serotonin receptors. Science. May 3;340(6132):610-4. doi: 10.1126/science.1232807. Epub 2013 Mar 21. PMID: 23519210
HsCD00598434
HsCD00598435

*Swapna GV, Rossi P, Montelione AF, Benach J, Yu B, Abashidze M, Seetharaman J, Xiao R, Acton TB, Tong L, Montelione GT. (2012) Three structural representatives of the PF06855 protein domain family from Staphyloccocus aureus and Bacillus subtilis have SAM domain-like folds and different functions. J Struct Funct Genomics. 2012 Sep;13(3):163-70. Epub 2012 Jul 29. PMID: 22843344

*Vorobiev SM, Neely H, Yu B, Seetharaman J, Xiao R, Acton TB, Montelione GT, Hunt JF. (2012) Crystal structure of a catalytically active GG(D/E)EF diguanylate cyclase domain from Marinobacter aquaeolei with bound c-di-GMP product. J Struct Funct Genomics. Sep;13(3):177-83. Epub 2012 Jul 29. PMID: 22843345
MaCD00385657

* Aziz A, Hess JF, Budamagunta MS, Voss JC, Kuzin AP, Huang YJ, Xiao R, Montelione GT, FitzGerald PG, Hunt JF. The structure of vimentin linker 1 and rod 1B domains characterized by site-directed spin-labeling electron paramagnetic resonance (SDSL-EPR) and X-ray crystallography. (2012) J Biol Chem. Aug 17;287(34):28349-61. doi: 10.1074/jbc.M111.334011. Epub 2012 Jun 26. PMID: 22740688
HsCD00338421
HsCD00338420
HsCD00331888

*Wu Y, Punta M, Xiao R, Acton TB, Sathyamoorthy B, Dey F, Fischer M, Skerra A, Rost B, Montelione GT, Szyperski T. (2012) NMR structure of lipoprotein YxeF from Bacillus subtilis reveals a calycin fold and distant homology with the lipocalin Blc from Escherichia coli. PLoS One. 7(6):e37404. doi: 10.1371/journal.pone.0037404. Epub 2012 Jun 5. PMID: 22693626
BsCD00429650

*Aramini JM, Petrey D, Lee DY, Janjua H, Xiao R, Acton TB, Everett JK, Montelione GT. (2012) Solution NMR structure of Alr2454 from Nostoc sp. PCC 7120, the first structural representative of Pfam domain family PF11267. J Struct Funct Genomics. Sep;13(3):171-6. Epub 2012 May 17. PMID: 22592539
NsCD00541071

* Snyder DA, Aramini JM, Yu B, Huang YJ, Xiao R, Cort JR, Shastry R, Ma LC, Liu J, Rost B, Acton TB, Kennedy MA, Montelione GT. (2012) Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus. Proteins. Jul;80(7):1901-6. doi: 10.1002/prot.24071. Epub 2012 Apr 16. PMID: 22422653

*Eletsky A, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. (2012) Solution NMR structures reveal a distinct architecture and provide first structures for protein domain family PF04536. J Struct Funct Genomics. Mar;13(1):9-14. Epub 2011 Dec 24.  PMID: 22422653
PgCD00536093
CgCD00338496

*Xu Q, Göhler AK, Kosfeld A, Carlton D, Chiu HJ, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Jahreis K, Wilson IA. (2012) The structure of Mlc titration factor A (MtfA/YeeI) reveals a prototypical zinc metallopeptidase related to anthrax lethal factor. J Bacteriol. Jun;194(11):2987-99. doi: 10.1128/JB.00038-12. Epub 2012 Mar 30. PMID: 22467785
KpCD00104687

*Ertekin A, Aramini JM, Rossi P, Leonard PG, Janjua H, Xiao R, Maglaqui M, Lee HW, Prestegard JH, Montelione GT. (2012) Human cyclin-dependent kinase 2-associated protein 1 (CDK2AP1) is dimeric in its disulfide-reduced state, with natively disordered N-terminal region. J Biol Chem. May 11;287(20):16541-9. doi: 10.1074/jbc.M112.343863. Epub 2012 Mar 14. PMID: 22427660
HsCD00339479

*Wu H, Wacker D, Mileni M, Katritch V, Han GW, Vardy E, Liu W, Thompson AA, Huang XP, Carroll FI, Mascarella SW, Westkaemper RB, Mosier PD, Roth BL, Cherezov V, Stevens RC. (2012) Structure of the human κ-opioid receptor in complex with JDTic. Nature. Mar 21;485(7398):327-32. doi: 10.1038/nature10939. PMID: 22437504
HsCD00586115<

* Vorobiev SM, Huang YJ, Seetharaman J, Xiao R, Acton TB, Montelione GT, Tong L. (2012) Human retinoblastoma binding protein 9, a serine hydrolase implicated in pancreatic cancers. Protein Pept Lett. 2012 Feb;19(2):194-7. PMID: 21933118

*Xu Q, Christen B, Chiu HJ, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Figurski DH, Shapiro L, Wilson IA. (2012) Structure of the pilus assembly protein TadZ from Eubacterium rectale: implications for polar localization. Mol Microbiol. Feb;83(4):712-27. doi: 10.1111/j.1365-2958.2011.07954.x. Epub 2012 Jan 18. PMID: 22211578
ErCD00382572

* Eletsky A, Petrey D, Zhang QC, Lee HW, Acton TB, Xiao R, Everett JK, Prestegard JH, Honig B, Montelione GT, Szyperski T. (2012) Solution NMR structures reveal unique homodimer formation by a winged helix-turn-helix motif and provide first structures for protein domain family PF10771. J Struct Funct Genomics. Mar;13(1):1-7. Epub 2012 Jan 6. PMID: 22223187

*Kamat SS, Holmes-Hampton GP, Bagaria A, Kumaran D, Tichy SE, Gheyi T, Zheng X, Bain K, Groshong C, Emtage S, Sauder JM, Burley SK, Swaminathan S, Lindahl PA, Raushel FM. (2011)  The catalase activity of diiron adenine deaminase. Protein Sci. Dec;20(12):2080-94. doi: 10.1002/pro.748. Epub 2011 Nov 9. PMID: 21998098

*Forouhar F, Saadat N, Hussain M, Seetharaman J, Lee I, Janjua H, Xiao R, Shastry R, Acton TB, Montelione GT, Tong L. (2011) A large conformational change in the putative ATP pyrophosphatase PF0828 induced by ATP binding. Acta Crystallogr Sect F Struct Biol Cryst Commun. Nov 1;67(Pt 11):1323-7. doi: 10.1107/S1744309111031447. Epub 2011 Oct 25.

*Aramini JM, Rossi P, Fischer M, Xiao R, Acton TB, Montelione GT. (2011) Solution NMR structure of VF0530 from Vibrio fischeri reveals a nucleic acid-binding function. Proteins. Oct;79(10):2988-91. doi: 10.1002/prot.23121. Epub 2011 Aug 26. PMID: 21905121
VfCD00305952

*Goren MA, Fox BG, Bangs JD. (2011) Amino acid determinants of substrate selectivity in the Trypanosoma brucei sphingolipid synthase family. Biochemistry. Oct 18;50(41):8853-61. doi: 10.1021/bi200981a. Epub 2011 Sep 22. PMID: 21899277
EvNO00084283
EvNO00084284
EvNO00306667

*Ramelot TA, Yang Y, Xiao R, Acton TB, Everett JK, Montelione GT, Kennedy MA. (2011) Solution NMR structure of BT_0084, a conjugative transposon lipoprotein from Bacteroides thetaiotamicron. Proteins. Oct 29. doi: 10.1002/prot.23235. [Epub ahead of print] PMID: 22116783

*Kim Y, Babnigg G, Jedrzejczak R, Eschenfeldt WH, Li H, Maltseva N, Hatzos-Skintges C, Gu M, Makowska-Grzyska M, Wu R, An H, Chhor G, Joachimiak A. (2011) High-throughput protein purification and quality assessment for crystallization. Methods. Sep;55(1):12-28. Epub 2011 Aug 31. PMID: 21907284

*Kufareva I, Rueda M, Katritch V, Stevens RC, Abagyan R; GPCR Dock 2010 participants. (2011) Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment. Structure. Aug 10;19(8):1108-26. doi: 10.1016/j.str.2011.05.012. PMID: 21827947
HsCD00292941
HsCD00292940
HsCD00292922
HsCD00292917
HsCD00292912

*Goble AM, Zhang Z, Sauder JM, Burley SK, Swaminathan S, Raushel FM. (2011) Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine. Biochemistry. Aug 2;50(30):6589-97. Epub 2011 Jul 6. PMID: 21710971
UnCD00343342
PaCD00343352
UnCD00343343

*Berardi MJ, Shih WM, Harrison SC, Chou JJ. (2011) Mitochondrial uncoupling protein 2 structure determined by NMR molecular fragment searching. Nature. Jul 24;476(7358):109-13. doi: 10.1038/nature10257. PMID: 21785437
MmCD00433656

*Beebe ET, Makino S, Nozawa A, Matsubara Y, Frederick RO, Primm JG, Goren MA, Fox BG. (2011) Robotic large-scale application of wheat cell-free translation to structural studies including membrane proteins. N Biotechnol. Apr 30;28(3):239-49. Epub 2010 Jul 15. PMID: 20637905
EvNO00084283

*Xu F, Wu H, Katritch V, Han GW, Jacobson KA, Gao ZG, Cherezov V, Stevens RC. (2011) Structure of an agonist-bound human A2A adenosine receptor. Science. Apr 15;332(6027):322-7. doi: 10.1126/science.1202793. Epub 2011 Mar 10. PMID: 21393508
HsCD00292954
HsCD00292958
HsCD00292950
HsCD00292945
HsCD00292939
HsCD00292915
HsCD00292914

*Bagaria A, Kumaran D, Burley SK, Swaminathan S. (2011) Structural basis for a ribofuranosyl binding protein: insights into the furanose specific transport. Proteins. Apr;79(4):1352-7. doi: 10.1002/prot.22965. Epub 2011 Feb 14. PMID: 21387413
HcCD00342063

*Das D, Hervé M, Feuerhelm J, Farr CL, Chiu HJ, Elsliger MA, Knuth MW, Klock HE, Miller MD, Godzik A, Lesley SA, Deacon AM, Mengin-Lecreulx D, Wilson IA. (2011) Structure and function of the first full-length murein peptide ligase (Mpl) cell wall recycling protein. PLoS One. Mar 18;6(3):e17624. doi: 10.1371/journal.pone.0017624. PMID: 21445265
PfCD00291233

* Mani R, Vorobiev S, Swapna GV, Neely H, Janjua H, Ciccosanti C, Xiao R, Acton TB, Everett JK, Hunt J, Montelione GT. (2011) Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold. J Struct Funct Genomics. Mar;12(1):27-32. Epub 2010 Dec 14. PMID: 21153711

*Ramelot TA, Smola MJ, Lee HW, Ciccosanti C, Hamilton K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Kennedy MA. (2011)  Solution structure of 4'-phosphopantetheine - GmACP3 from Geobacter metallireducens: a specialized acyl carrier protein with atypical structural features and a putative role in lipopolysaccharide biosynthesis. Biochemistry. Mar 8;50(9):1442-53. Epub 2011 Feb 14. PMID: 21235239

*Kamat SS, Bagaria A, Kumaran D, Holmes-Hampton GP, Fan H, Sali A, Sauder JM, Burley SK, Lindahl PA, Swaminathan S, Raushel FM. (2011) Catalytic mechanism and three-dimensional structure of adenine deaminase. Biochemistry. Mar 22;50(11):1917-27. Epub 2011 Feb 4. PMID: 21247091

*Barb AW, Cort JR, Seetharaman J, Lew S, Lee HW, Acton T, Xiao R, Kennedy MA, Tong L, Montelione GT, Prestegard JH. (2011) Structures of domains I and IV from YbbR are representative of a widely distributed protein family. Protein Sci. Feb;20(2):396-405. doi: 10.1002/pro.571. Epub 2011 Jan 18. PMID: 21154411
DhCD00358128

*Kamat SS, Fan H, Sauder JM, Burley SK, Shoichet BK, Sali A, Raushel FM. (2011) Enzymatic deamination of the epigenetic base N-6-methyladenine. J Am Chem Soc. Feb 23;133(7):2080-3. Epub 2011 Jan 28. PMID: 21275375

*Aramini JM, Rossi P, Cort JR, Ma LC, Xiao R, Acton TB, Montelione GT. (2011) Solution NMR structure of the plasmid-encoded fimbriae regulatory protein PefI from Salmonella enterica serovar Typhimurium. Proteins.  Jan;79(1):335-9. PMID: 20979070
NsCD00541071

*Xu Q, Eguchi T, Mathews II, Rife CL, Chiu HJ, Farr CL, Feuerhelm J, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Weekes D, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2010) Insights into substrate specificity of geranylgeranyl reductases revealed by the structure of digeranylgeranylglycerophospholipid reductase, an essential enzyme in the biosynthesis of archaeal membrane lipids. J Mol Biol. Dec 3;404(3):403-17. doi: 10.1016/j.jmb.2010.09.032. Epub 2010 Oct 1. PMID: 20869368
TaCD00087985

*Chaulk S, Lu J, Tan K, Arthur DC, Edwards RA, Frost LS, Joachimiak A, Glover JN. (2010) N. meningitidis 1681 is a member of the FinO family of RNA chaperones. RNA Biol. Nov-Dec;7(6):812-9. Epub 2010 Nov 1. PMID: 21045552
NmCD00584426

*Chien EY, Liu W, Zhao Q, Katritch V, Han GW, Hanson MA, Shi L, Newman AH, Javitch JA, Cherezov V, Stevens RC. (2010) Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist. Science. Nov 19;330(6007):1091-5. doi: 10.1126/science.1197410. PMID: 21097933
HsCD00416047

*Wu B, Chien EY, Mol CD, Fenalti G, Liu W, Katritch V, Abagyan R, Brooun A, Wells P, Bi FC, Hamel DJ, Kuhn P, Handel TM, Cherezov V, Stevens RC. (2010) Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists. Science. Nov 19;330(6007):1066-71. doi: 10.1126/science.1194396. Epub 2010 Oct 7. PMID: 20929726
HsCD00292912
HsCD00292917
HsCD00292922
HsCD00292940
HsCD00292941
HsCD00292912
HsCD00292917
HsCD00292922
HsCD00292940
HsCD00292941

*Xu Q, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Yeh A, Zhou J, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2010) Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron. Acta Crystallogr Sect F Struct Biol Cryst Commun. Oct 1;66(Pt 10):1297-305. doi: 10.1107/S1744309110023055. Epub 2010 Jul 31. PMID: 20944225
BtCD00452670
BtCD00324986

 *Kim Y, Zhou M, Moy S, Morales J, Cunningham MA, Joachimiak A. (2010) High-resolution structure of the nitrile reductase QueF combined with molecular simulations provide insight into enzyme mechanism. J Mol Biol. Nov 19;404(1):127-37. doi: 10.1016/j.jmb.2010.09.042. Epub 2010 Sep 25. PMID: 20875425
VcCD00584771

*Chien EY, Liu W, Zhao Q, Katritch V, Han GW, Hanson MA, Shi L, Newman AH, Javitch JA, Cherezov V, Stevens RC. (2010) Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist. Science. Nov 19;330(6007):1091-5. doi: 10.1126/science.1197410. PMID: 21097933
HsCD00416047

*Bianchetti CM, Blouin GC, Bitto E, Olson JS, Phillips GN Jr. (2010) The structure and NO binding properties of the nitrophorin-like heme-binding protein from Arabidopsis thaliana gene locus At1g79260.1. Proteins. Mar;78(4):917-31. doi: 10.1002/prot.22617. PMID: 19938152
AtCD00313651

*Chen YH, Hu L, Punta M, Bruni R, Hillerich B, Kloss B, Rost B, Love J, Siegelbaum SA, Hendrickson WA. (2010) Homologue structure of the SLAC1 anion channel for closing stomata in leaves. Nature. Oct 28;467(7319):1074-80. doi: 10.1038/nature09487. PMID: 20981093
HiCD00340722

*Tan K, Tesar C, Wilton R, Keigher L, Babnigg G, Joachimiak A. (2010) Novel α-glucosidase from human gut microbiome: substrate specificities and their switch. FASEB J. Oct;24(10):3939-49. doi: 10.1096/fj.10-156257. Epub 2010 Jun 25. PMID: 20581222
RoCD00342297

*Mancia F, Love J. (2010) High-throughput expression and purification of membrane proteins. J Struct Biol. Oct;172(1):85-93. Epub 2010 Apr 13. PMID: 20394823
EvNO00091443
EvNO00304420

*Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wooley J, Wüthrich K, Wilson IA. (2010)  The JCSG high-throughput structural biology pipeline. Acta Crystallogr Sect F Struct Biol Cryst Commun. Oct 1;66(Pt 10):1137-42. Epub 2010 Sep 30. PMID: 20944202

*Hall RS, Agarwal R, Hitchcock D, Sauder JM, Burley SK, Swaminathan S, Raushel FM. (2010) Discovery and structure determination of the orphan enzyme isoxanthopterin deaminase. Biochemistry. May 25;49(20):4374-82. PMID: 20415463

*Hall RS, Fedorov AA, Marti-Arbona R, Fedorov EV, Kolb P, Sauder JM, Burley SK, Shoichet BK, Almo SC, Raushel FM. (2010) The hunt for 8-oxoguanine deaminase. J Am Chem Soc. Feb 17;132(6):1762-3. PMID: 20088583
UnCD00430268

*Xu Q, Bateman A, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2010) Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain. J Mol Biol. Feb 12;396(1):31-46. doi: 10.1016/j.jmb.2009.11.006. Epub 2009 Nov 10. PMID: 19913036
SsCD00545615

*Xu Q, Traag BA, Willemse J, McMullan D, Miller MD, Elsliger MA, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chruszcz M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Grzechnik SK, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, Minor W, Mommaas AM, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Wang S, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, van Wezel GP. (2009) Structural and functional characterizations of SsgB, a conserved activator of developmental cell division in morphologically complex actinomycetes. J Biol Chem. Sep 11;284(37):25268-79. doi: 10.1074/jbc.M109.018564. Epub 2009 Jun 30. PMID: 19567872
TfCD00332036

*Xiang DF, Xu C, Kumaran D, Brown AC, Sauder JM, Burley SK, Swaminathan S, Raushel FM. (2009) Functional annotation of two new carboxypeptidases from the amidohydrolase superfamily of enzymes. Biochemistry. Jun 2;48(21):4567-76. PMID: 19358546
UnCD00430273

*Fox BG, Blommel PG. (2009) Autoinduction of protein expression. Curr Protoc Protein Sci. Apr;Chapter 5:Unit 5.23. PMID: 19365792
EvNO00084279

*Goren MA, Nozawa A, Makino S, Wrobel RL, Fox BG. (2009) Cell-free translation of integral membrane proteins into unilamelar liposomes. Methods Enzymol. 463:647-73. PMID: 19892197
EvNO00084283
EvNO00306667

*Goren MA, Fox BG. (2008) Wheat germ cell-free translation, purification, and assembly of a functional human stearoyl-CoA desaturase complex. Protein Expr Purif. 2008 Dec;62(2):171-8. Epub 2008 Aug 15 PMID: 18765284 EvNO00084283

*Zhang Y, Thiele I, Weekes D, Li Z, Jaroszewski L, Ginalski K, Deacon AM, Wooley J, Lesley SA, Wilson IA, Palsson B, Osterman A, Godzik A. (2009) Three-dimensional structural view of the central metabolic network of Thermotoga maritima. Science. Sep 18;325(5947):1544-9. doi: 10.1126/science.1174671. PMID: 19762644
TmCD00282355
TmCD00084798
TmCD00083921
TmCD00282153
TmCD00282192

*Bitto E, Bingman CA, Bittova L, Frederick RO, Fox BG, Phillips GN Jr. (2009) X-ray structure of Danio rerio secretagogin: A hexa-EF-hand calcium sensor. Proteins. 2009 Aug 1;76(2):477-83. doi: 10.1002/prot.22362. PMID: 19241471
DrCD00084239

*Berman HM, Westbrook JD, Gabanyi MJ, Tao W, Shah R, Kouranov A, Schwede T, Arnold K, Kiefer F, Bordoli L, Kopp J, Podvinec M, Adams PD, Carter LG, Minor W, Nair R, La Baer J. (2009)  The protein structure initiative structural genomics knowledgebase. Nucleic Acids Res. Jan;37(Database issue):D365-8. Epub 2008 Nov 14.

*Xu Q, McMullan D, Abdubek P, Astakhova T, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Elsliger MA, Feuerhelm J, Hale J, Han GW, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Sri Krishna S, Kumar A, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Trame C, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2009) A structural basis for the regulatory inactivation of DnaA. J Mol Biol. Jan 16;385(2):368-80. doi: 10.1016/j.jmb.2008.10.059. Epub 2008 Oct 30. PMID: 19000695
SaCD00103804

*Jaakola VP, Griffith MT, Hanson MA, Cherezov V, Chien EY, Lane JR, Ijzerman AP, Stevens RC. (2008) The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.Science. Nov 21;322(5905):1211-7. doi: 10.1126/science.1164772. Epub 2008 Oct 2. PMID: 18832607
HsCD00292914
HsCD00292915
HsCD00292939
HsCD00292945
HsCD00292950
HsCD00292954
HsCD00292958

*Bitto E, Bingman CA, Bittova L, Kondrashov DA, Bannen RM, Fox BG, Markley JL, Phillips GN Jr. (2008) Structure of human J-type co-chaperone HscB reveals a tetracysteine metal-binding domain. J Biol Chem. Oct 31;283(44):30184-92. doi: 10.1074/jbc.M804746200. Epub 2008 Aug 19. PMID: 18713742
HsCD00333949
HsCD00310288
 
Tyagi R, Eswaramoorthy S, Burley SK, Raushel FM, Swaminathan S. (2008) A common catalytic mechanism for proteins of the HutI family. Biochemistry. May 20;47(20):5608-15. doi: 10.1021/bi800180g. Epub 2008 Apr 29. PMID: 18442260
UnCD00430274

*Madegowda M, Eswaramoorthy S, Burley SK, Swaminathan S. (2008) X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus. Proteins. May 1;71(2):534-40. doi: 10.1002/prot.21888. PMID: 18175317
BcCD00430220

* Hayes PL, Lytle BL, Volkman BF, Peterson FC. (2008) The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominantly unstructured protein. Protein Sci. Mar;17(3):571-6. doi: 10.1110/ps.073290408. PMID: 18287285
HsCD00383770
HsCD00396783
HsCD00396778
HsCD00396766
HsCD00297593
HsCD00297609
HsCD00305923

*Cherezov V, Rosenbaum DM, Hanson MA, Rasmussen SG, Thian FS, Kobilka TS, Choi HJ, Kuhn P, Weis WI, Kobilka BK, Stevens RC. (2007) High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor. Science. Nov 23;318(5854):1258-65. Epub 2007 Oct 25. PMID: 17962520
HsCD00292924
HsCD00292925
HsCD00292938
HsCD00292942
HsCD00292946
HsCD00292947

*Tyagi R, Kumaran D, Burley SK, Swaminathan S. (2007) X-ray structure of imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution. Proteins. Nov 15;69(3):652-8. PMID: 17640072
AtCD00383439

*Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK. (2007) Structural genomics of protein phosphatases. J Struct Funct Genomics. Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID: 18058037
HsCD00370061

*Bitto E, Bingman CA, Wesenberg GE, McCoy JG, Phillips GN Jr. (2007) Structure of aspartoacylase, the brain enzyme impaired in Canavan disease. Proc Natl Acad Sci U S A. Jan 9;104(2):456-61. Epub 2006 Dec 28. PMID: 17194761
HsCD00396795

*Schwarzenbacher R, McMullan D, Krishna SS, Xu Q, Miller MD, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, McPhillips TM, Morse AT, Quijano K, Spraggon G, Stevens RC, van den Bedem H, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA. (2006) Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 A resolution reveals a new fold. Proteins. Oct 1;65(1):243-8. PMID: 16865707
TmCD00084776
TmCD00282188

*Shen N, Guo L, Yang B, Jin Y, Ding J. (2006) Structure of human tryptophanyl-tRNA synthetase in complex with tRNATrp reveals the molecular basis of tRNA recognition and specificity. Nucleic Acids Res. Jun 23;34(11):3246-58. Print 2006. PMID: 16798914
TmCD00089386

*Yang Z, Savchenko A, Yakunin A, Zhang R, Edwards A, Arrowsmith C, Tong L. (2003) Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643. J Biol Chem. Mar 7;278(10):8804-8. Epub 2002 Dec 21. PMID: 12496312
TmCD00085086

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Publications citing or mentioning DNASU or the PSI:Biology-MR (does not include reviews or editorials)

* indicates publication from a PSI center

* Berman, H. M., Gabanyi, M. J., Groom, C. R., Johnson, J. E., Murshudov, G. N., Nicholls, R. A., Reddy, V., Schwede, T., Zimmerman, M. D., Westbrook, J. & Minor, W. (2015). Data to knowledge: how to get meaning from your result. IUCrJ 2. Volume 2 Part 1 doi:10.1107/S2052252514023306

Kamens J. (2014) Addgene: making materials sharing "science as usual". PLoS Biol. 2014 Nov 11;12(11):e1001991. doi: 10.1371/journal.pbio.1001991. eCollection 2014. PMID: 25387006

Kamens J. (2014) The Addgene repository: an international nonprofit plasmid and data resource. Nucleic Acids Res. 2014 Nov 11. pii: gku893. [Epub ahead of print]  PMID: 25392412

Lourido, L., Diez, P., Dasilva, N., Gonzalez-Gonzalez, M., Ruiz-Romero, C., Blanco, F., Orfao, A., LaBaer, J. and Fuentes, M. (2014) In Marko-Varga, G. (ed.), Genomics and Proteomics for Clinical Discovery and Development. Springer Netherlands, Vol. 6, pp. 147-173.

Marx V. (2014) Plasmids: shopping in the age of plenty. Nat Methods. 2014 Jul 30;11(8):795-798. doi: 10.1038/nmeth.3034.
PMID: 25075905

Mohr SE, Hu Y, Kim K, Housden BE, Perrimon N. (2014) Resources for Functional Genomics Studies in Drosophila melanogaster. Genetics. 2014 Mar 20. [Epub ahead of print] PMID: 24653003

Khafizov K1, Madrid-Aliste C, Almo SC, Fiser A. (2014) Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative. Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3733-8. doi: 10.1073/pnas.1321614111. Epub 2014 Feb 24. PMID: 24567391

Zimmerman, Matthew D., et al. "Data management in the modern structural biology and biomedical research environment." Methods in molecular biology (Clifton, NJ) 1140 (2014): 1. PMID: 24590705

Elkins, Jonathan M. "Case Study—Structural Genomics and Human Protein Kinases." Methods in molecular biology (Clifton, NJ) 1140 (2014): 325. PMID: 24590728

Khafizov K, Madrid-Aliste C, Almo SC, Fiser A. (2014)  Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative. Proc Natl Acad Sci U S A. 2014 Feb 24. [Epub ahead of print] PMID: 24567391

*Taichi E. Takasuka, Johnnie A. Walker, Lai F. Bergeman, Kirk A. Vander Meulen, Shin-ichi Makino, Nathaniel L. Elsen, Brian G. Fox (2014) Cell-Free Translation of Biofuel Enzymes.  Methods in Molecular Biology Volume 1118, 2014, pp 71-95. PMID: 24395410

* Pieper U, Webb BM, Dong GQ, Schneidman-Duhovny D, Fan H, Kim SJ, Khuri N, Spill YG, Weinkam P, Hammel M, Tainer JA, Nilges M, Sali A. (2014) ModBase, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. Jan 1;42(1):D336-46. doi: 10.1093/nar/gkt1144. Epub 2013 Nov 23. PMID: 24271400

* Depietro PJ, Julfayev ES, McLaughlin WA. (2013) Quantification of the impact of PSI:Biology according to the annotations of the determined structures. BMC Struct Biol. Oct 21;13(1):24. [Epub ahead of print] PMID: 24139526

Geiling B, Vandal G, Posner AR, de Bruyns A, Dutchak KL, et al. (2013) A Modular Lentiviral and Retroviral Construction System to Rapidly Generate Vectors for Gene Expression and Gene Knockdown In Vitro and In Vivo. PLoS ONE 8(10): e76279. doi:10.1371/journal.pone.0076279 PMID: 24146852

Wolfson, W. (2013) Addgene: the bank that gives points for (plasmid) deposits. Chem Biol. Jul 25;20(7):857-8. doi: 10.1016/j.chembiol.2013.07.002. PMID: 23890002

Lee JR, Magee DM, Gaster RS, LaBaer J, Wang SX. (2013) Expert Rev Proteomics. Feb;10(1):65-75. doi: 10.1586/epr.12.67.  PMID: 23414360

Kahl LJ, and Endy D. (2013) A survey of enabling technologies in synthetic biology. J Biol Eng. May 10;7(1):13. [Epub ahead of print] PMID: 23663447

Im H, Snyder M. (2013) Preparation of recombinant protein spotted arrays for proteome-wide identification of kinase targets. Curr Protoc Protein Sci. Apr;Chapter 27:Unit27.4. doi: 10.1002/0471140864.ps2704s72. PMID: 23546622

Festa F, Steel J, Bian X, Labaer J. (2013) High-throughput cloning and expression library creation for functional proteomics. Proteomics. Mar 4. doi: 10.1002/pmic.201200456. [Epub ahead of print] PMID: 23457047

Wilson ML, Cai Y, Hanlon R, Taylor S, Chevreux B, Setubal JC, Tyler BM, Peccoud J. (2013) Sequence verification of synthetic DNA by assembly of sequencing reads. Nucleic Acids Res. Jan 7;41(1):e25. doi: 10.1093/nar/gks908. Epub 2012 Oct 4. PMID: 23042248

Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ. (2013) Spanish human proteome project: dissection of chromosome 16. J Proteome Res. Jan 4;12(1):112-22. doi: 10.1021/pr300898u. Epub 2012 Dec 12. PMID: 23234512

Nilsson CL, Berven F, Selheim F, Liu H, Moskal JR, Kroes RA, Sulman EP, Conrad CA, Lang FF, Andrén PE, Nilsson A, Carlsohn E, Lilja H, Malm J, Fenyö D, Subramaniyam D, Wang X, Gonzales-Gonzales M, Dasilva N, Diez P, Fuentes M, Végvári Á, Sjödin K, Welinder C, Laurell T, Fehniger TE, Lindberg H, Rezeli M, Edula G, Hober S, Marko-Varga G. (2013) Chromosome 19 annotations with disease speciation: a first report from the Global Research Consortium.  J Proteome Res. Jan 4;12(1):135-50. doi: 10.1021/pr3008607. Epub 2012 Dec 18. PMID: 23249167

Linshiz G, Goldberg A, Konry T, Hillson NJ. (2012) The fusion of biology, computer science, and engineering: towards efficient and successful synthetic biology. Perspect Biol Med. 2012;55(4):503-20. doi: 10.1353/pbm.2012.0044. PMID: 23502561

Ham TS, Dmytriv Z, Plahar H, Chen J, Hillson NJ, Keasling JD. (2012) Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools. Nucleic Acids Res. Oct;40(18):e141. doi: 10.1093/nar/gks531. Epub 2012 Jun 19. PMID: 22718978

Takulapalli BR, Qiu J, Magee DM, Kahn P, Brunner A, Barker K, Means S, Miersch S, Bian X, Mendoza A, Festa F, Syal K, Park JG, LaBaer J, Wiktor P. (2012) High density diffusion-free nanowell arrays. J Proteome Res. Aug 3;11(8):4382-91. Epub 2012 Jul 13. PMID: 22742968

Miersch S, Sidhu SS. (2012) Synthetic antibodies: Concepts, potential and practical considerations. Methods.  Aug;57(4):486-98. doi: 10.1016/j.ymeth.2012.06.012. Epub 2012 Jun 27. PMID: 22750306

*Gifford LK, Carter LG, Gabanyi MJ, Berman HM, Adams PD. (2012) The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource. J Struct Funct Genomics. Jun;13(2):57-62. doi: 10.1007/s10969-012-9133-7. Epub 2012 Apr 6. PMID: 22527514

Bray JE. (2012) Target selection for structural genomics based on combining fold recognition and crystallisation prediction methods: application to the human proteome. J Struct Funct Genomics.
Mar;13(1):37-46. Epub 2012 Feb 22. PMID: 22354707

Durani V, Sullivan BJ, Magliery TJ. (2012) Simplifying protein expression with ligation-free, traceless and tag-switching plasmids. Protein Expr Purif. Sep;85(1):9-17. doi: 10.1016/j.pep.2012.06.007. Epub 2012 Jun 21. PMID: 22728767

Waugh DS (2011). An overview of enzymatic reagents for the removal of affinity tags. Protein Expr Purif. 2011 Dec;80(2):283-93. doi: 10.1016/j.pep.2011.08.005. Epub 2011 Aug 19. PMID: 21871965

Nicolini C, Sivozhelezov  V , Bavastrello  V, Bezzerra T , Scudieri D, Spera R and Pechkova E. (2011) Matrices for Sensors from Inorganic, Organic, and Biological Nanocomposites. Materials  4(8), 1483-1518; doi:10.3390/ma4081483

Qiu J, LaBaer J. (2011) Nucleic acid programmable protein array a just-in-time multiplexed protein expression and purification platform.  Methods Enzymol. 500:151-63. doi: 10.1016/B978-0-12-385118-5.00009-8.PMID: 21943897

*Gabanyi MJ, Adams PD, Arnold K, Bordoli L, Carter LG, Flippen-Andersen J, Gifford L, Haas J, Kouranov A, McLaughlin WA, Micallef DI, Minor W, Shah R, Schwede T, Tao YP, Westbrook JD, Zimmerman M, Berman HM. (2011) The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. J Struct Funct Genomics. Jul;12(2):45-54. doi: 10.1007/s10969-011-9106-2. Epub 2011 Apr 7. PMID: 21472436

Miersch S, LaBaer J. (2011) Nucleic Acid programmable protein arrays: versatile tools for array-based functional protein studies. Curr Protoc Protein Sci. Apr; Chapter 27:Unit27.2.PMID: 21488044

Matarraz S, González-González M, Jara M, Orfao A, Fuentes M. (2011) New technologies in cancer. Protein microarrays for biomarker discovery. Clin Transl Oncol. Mar;13(3):156-61.PMID: 21421460

Anderson KS, Sibani S, Wallstrom G, Qiu J, Mendoza EA, Raphael J, Hainsworth E, Montor WR, Wong J, Park JG, Lokko N, Logvinenko T, Ramachandran N, Godwin AK, Marks J, Engstrom P, Labaer J. (2011) Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer. J Proteome Res.  Jan 7;10(1):85-96. Epub 2010 Nov 23.

*Grabowski M, Chruszcz M, Zimmerman MD, Kirillova O, Minor W. (2009) Benefits of structural genomics for drug discovery research. Infect Disord Drug Targets. Nov;9(5):459-74.PMID: 20977275

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