Gene:
Gene Symbol:
VP0733
Gene Name:
(dimethylallyl)adenosine tRNA methylthiotransferase
Original Clone ID:
VpR108-21.1
Keyword:
None
Species:
Vibrio parahaemolyticus
Type:
cDNA
Vector Name:
pET21_NESG
Format:
FUSION
Source:
Northeast Structural Genomics Consortium
Description:
None
Comments:
None
Mutation / Discrepancy:
No / Yes
Publications:
None
Authors:
Rutgers University
PSI
Northeast Structural Genomics Consortium
PSI
Northeast Structural Genomics Consortium
VpCD00540813
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AVAILABLE
No restriction
Special MTA: PSI/NESG
Special MTA: PSI/NESG
Insert sequence: 1422nts
Open reading frame: 50 to 1471
GGGGGACATTCCTCAGAATATTTTGTTTACTTTAGAAGGAGATATACATATGAGTAAGAA
ACTGCTAATTAAAACCTGGGGCTGCCAGATGAACGAATACGATTCATCAAAAATGGCCGA
CCTGCTTAATGCTGCAAACGGCTATGAGCTGACGGAAGAGCCAGAGGAAGCAGACGTACT
TCTACTTAACACCTGTTCGATCCGTGAAAAAGCGCAAGAGAAAGTTTTCCACCAGCTAGG
CCGTTGGAAAACACTAAAAGATAAAAAACCTGGCGTAGTTATCGGTGTAGGTGGTTGTGT
AGCAACACAAGAAGGTGACCACATCCGTGAGCGTGCACCATACGTTGACGTAATCTTTGG
CCCTCAAACTCTGCACCGCCTACCTGAGATGATCAAACAATCTCAAACTGACGATGCACC
GGTAATGGACATTTCGTTCCCAGAGATTGAAAAGTTCGACCGCCTACCTGAGCCACGTGC
AGAAGGTGCGACGGCGTTTGTTTCTATCATGGAAGGCTGTTCAAAATACTGTACTTACTG
CGTTGTACCATACACTCGTGGTGAAGAAGTTAGTCGTCCAATGGATGACGTGTTATTCGA
GATTGCACAGCTAGCGGAACAAGGTGTACGTGAAGTTAACCTACTAGGTCAAAACGTAAA
CGCATACCGTGGCCCTATGCACGACGGCGAGATCTGCTCTTTTGCTGAACTGCTTCGTCT
CGTTGCATCTATCGATGGTATCGACCGTATTCGTTTCACGACTAGCCACCCGCTAGAGTT
TACAGACGACATCATCGCGGTTTACGAAGATACCCCGGAGCTTGTGAGTTTCCTACACCT
GCCAGTACAAAGTGGTAGTGACCGTATTCTAACGATGATGAAGCGTCCTCACACAGCTAT
CGAGTACAAGTCAATCATCCGTAAACTACGTAAAGCGCGTCCTGATATCCAAATCAGTTC
TGACTTTATTGTTGGTTTCCCTGGTGAAACAGACAAAGATTTCCAAGACACAATGAAGCT
AATCAAAGACGTAGACTTTGACATGAGCTTCAGCTTTATCTTCTCACCTCGTCCAGGTAC
ACCAGCGGCAGATTACCCTTGTGATATTCCAGAGCAAGTGAAAAAAGAGCGTCTATACGA
GCTGCAACAAACCATCAATGCACAAGCAATGCGTTACTCACGCCTAATGCTTGGTACTGA
GCAGCGTGTACTGGTTGAAGGCCCTTCTAAGAAAAACCTAATGGAACTGCGCGCTCGTAC
AGAAAACAACCGTGTAGTAAACTTTGAAGGTAGCGCAGACCTAATTGGTCAGTTCGTTGA
CGTGAAGATTACGGACGTATTTGCAAACTCGCTACGTGGTGAGCTAGTACGTACAGAAAA
AGACATGGACCTTCGTAGTGTGATTTCTCCAACACAAATGATGGCGAAAACACGTCGCGA
AGATGAGCTAGGTGTAGCTACTTTTACGCCA
Protein sequence predicted based on nucleotide sequence
MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVF HQLGRWKTLKDKKPGVVIGVGGCVATQEGDHIRERAPYVDVIFGPQTLHRLPEMIKQSQT DDAPVMDISFPEIEKFDRLPEPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDD VLFEIAQLAEQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDRIRFTTSH PLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDI QISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDIPEQVKKE RLYELQQTINAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSADLIG QFVDVKITDVFANSLRGELVRTEKDMDLRSVISPTQMMAKTRREDELGVATFTP
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Mutations:
None
Discrepancy:
g303a,V101V;c483t,C161C;
g864a,S288S;c951t,D317D;
t1035a,P345P;a1059t,I353I;
g1074a,K358K;c1145g,A382G
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
ampicillin
Bacterial Selection Condition:
100 ug/mL ampicillin
Growth Condition:
Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:
Commonly used conditions for ampicillin resistant plasmid clones.
Protein Expression Results:
ProteinExpressed: Protein_Confirmed
ProteinPurified: Protein_Purified
SolubleProtein: Protein_Soluble
Find experimental protocols in VpR108
Recommended expression in:
Not Applicable
Vector Name:
pET21_NESG
Synonyms:
pET21, pET21-modified, pET21Cc, pET21_NESG
Sequencing Primer:
Forward:
T7
Reverse:
T7 terminator
Description:
Bacterial (E. coli) expression vector with T7 lac promoter, adds C-terminal 6xHis tag; ampicillin resistance; restriction enzyme cloning.
Comments:
Modified Novagen pET vector-common MCS
Size (bp):
5415
Parent Vector:
None
Properties:
bacterial expression, in vitro transcription, multiple cloning site, with tag/fusion/marker
Author Name:
Gaetano T. Montleione
Thomas B. Acton
Northeast Structural Genomics Consortium
Thomas B. Acton
Northeast Structural Genomics Consortium
Publications:
PMID:
15808222
Title: Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
MCS
MCS
MCS (includes SphI, XbaI, BamHI, EcoRI, XhoI)
157
253
bacterial origin
ori
pBR322-type bacterial origin of replication
3180
3862
gene fragment
ROP
ROP
2580
2756
primer
T7 forward
T7 forward sequencing primer
283
298
primer
T7 reverse
T7 reverse sequencing primer
66
84
promoter
T7
T7 promoter
280
299
repressor binding site
lacO
lacO regulatory sequence
258
280
repressor protein gene
LacI
LacI
752
1768
selectable marker
AmpR
ampicillin resistance gene
3960
4619
ssDNA origin
f1 ori
f1 origin
5081
5387
tag
His
C-terminal 6xHis tag
140
157
trxn termination sequence
T7 term
T7 termination sequence
68
72
