Gene:
Gene Symbol:
pqqE
Gene Name:
pyrroloquinoline quinone biosynthesis protein PqqE
Original Clone ID:
14067
Keyword:
None
Species:
Methylococcus capsulatus str. Bath
Type:
cDNA
Vector Name:
pNIC28-Bsa4
Format:
CLOSED
Source:
New York Structural Genomics Research Consortium
Description:
None
Comments:
None
Mutation / Discrepancy:
No / Yes
Publications:
None
Authors:
Albert Einstein College of Medicine
Steven Almo
PSI:Biology
New York Structural Genomics Research Consortium
Steven Almo
PSI:Biology
New York Structural Genomics Research Consortium
McCD00544969
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AVAILABLE
No restriction
Special MTA: PSI
Special MTA: PSI
Insert sequence: 885nts
Open reading frame: 33 to 917
TGGGTACCGAGAACCTGTACTTCCAATCCATGGCTGGATCAGAGAAATCATCGCTTACTA
AACCGCGCTGGCTGCTGGCGGAGCTGACCTACGCCTGCCCGCTGCAGTGTCCCTATTGCT
CCAACCCCCTGGATTACGCCCGCTTGGGTGATGAGCTGAGCACCGAAGAATGGAGGCGGG
TGCTGAGTGAGGCCCGCGCGCTCGGTGCCGTCCAGCTTGGGCTTTCCGGCGGTGAACCGC
TGACCCGCCGCGACTTGGCCGAAATCGTCACCCACGCCCGCCAGCTCGGCTATTACACCA
ACCTCATCACCTCGGGCTACGGCCTGGACGAAGTCCGCATCGCCGAATTGAAATCGGCCG
GCCTCGACCACATCCAGGTCAGCATCCAGTCGCCGGAAAAGCTGCTGAACGATGAACTCG
CCGGCACCGAGTCTTTCGAACACAAACTCGAGGTGGCCCGCTGGGTGAAGCAGCATGGCT
ATCCCATGGTCTTGTGCGTGGTGATCCACCGCCAGAACATCCATCAGATGCAGCAGATCT
TGGAGATGGCGGACGAACTCGGGGCGGATTACCTGGAACTGGCCAATACCCAGTATTATG
GTTGGGCGCTGCTCAACAGGGACCATCTGCTGCCGACCCGTGAGCAGTTCGCCGAAGCCG
AGGCGATCGCGCAAAGCTACAAGGAGAAGGTGAAGGGACGGATGAAGATCTACTATGTCG
TCCCGGACTACTACGAAGACCGGCCCAAGGCCTGCATGAACGGCTGGGGCACGACATTCC
TCACCATCGCGCCGGACGGGATGGCCCTGCCCTGCCACGCTGCCCGCGAACTACCCGGGC
TGAACTGCCCCAGCGTACGCGACTTCAGCATACGGGAAATCTGGTACGAATCGGCCGCCT
TCAATCGTTTCCGCTAACAGTAAAGGTAA
Protein sequence predicted based on nucleotide sequence
AGSEKSSLTKPRWLLAELTYACPLQCPYCSNPLDYARLGDELSTEEWRRVLSEARALGAV QLGLSGGEPLTRRDLAEIVTHARQLGYYTNLITSGYGLDEVRIAELKSAGLDHIQVSIQS PEKLLNDELAGTESFEHKLEVARWVKQHGYPMVLCVVIHRQNIHQMQQILEMADELGADY LELANTQYYGWALLNRDHLLPTREQFAEAEAIAQSYKEKVKGRMKIYYVVPDYYEDRPKA CMNGWGTTFLTIAPDGMALPCHAARELPGLNCPSVRDFSIREIWYESAAFNRFR*
Coding Sequence Details
Insert Sequence Verified?:
Y
Verification Method:
Sequence Verification
Mutations:
None
Discrepancy:
c112t,L38L;c120t,D40D;
a143g,K48R;g186t,L62L;
g321a,K107K;a418g,K140E;
t507c,I169I;c555t,N185N;
c576g,A192A;c684t,Y228Y;
t693g,P231P;a789t,A263A
5' Linker Sequence:
None
3' Linker Sequence:
None
Recommended Growth Condition:
Distributed in bacterial strain:
DH5-alpha T1 phage resistant
Antibiotic Selection:
Host Type:
bacterial
Marker:
kanamycin
Bacterial Selection Condition:
50ug/mL kanamycin
Growth Condition:
Growth with the single antibiotic in LB at 37 degrees is recommended.
Comments:
Conditions for Gateway-type vectors in recombined (with insert) form and other kanamycin resistant vectors.
Protein Expression Results:
SolubleProtein: Not_Applicable
ProteinExpressed: Tested_Not_Found
ProteinPurified: Tested_Not_Purified
Find experimental protocols in NYCGRC-014067
Recommended expression in:
Not Applicable
Vector Name:
pNIC28-Bsa4
Synonyms:
pSEC-His
Description:
Bacterial expression vector with T7 promoter and N-terminal 6xHis tag with TEV protease cleavage site; kanamycin resistance in bacteria; ligation independent cloning
Comments:
pET expression vector with His6 tag in 22-aa N-terminal fusion peptide, with TEV protease cleavage site. Includes sites for LIC cloning, and a “stuffer” fragment that includes the SacB gene, allowing negative selection on 5% sucrose
Size (bp):
7284
Parent Vector:
None
Properties:
bacterial expression, ligation independent cloning (LIC), with tag/fusion/marker
Author Name:
Opher Gileadi
Publications:
PMID:
20541610
Title: High-throughput production of human proteins for crystallization: the SGC experience
Vector Map:
Vector Sequence:
Sequence:
Vector Features:
Type
Name
Description
Start
End
bacterial origin
ColE
ColE1 pBR322 origin
4338
4338
bacterial origin
f1
f1 origin
2266
2721
ligation independent cloning
5'LIC
96
110
ligation independent cloning
3'LIC
2036
2050
primer
pLICfor
pLIC forward sequencing primer TGTGAGCGGATAACAATTCC
7262
7282
primer
pLICrev
pLIC reverse sequencing primer AGCAGCCAACTCAGCTTCC
2145
2164
promoter
T7
T7 promoter
7238
7254
protease cleavage site
TEV
TEV protease cleavage site
87
110
repressor binding site
lac operator
lac operator
7257
7281
repressor protein gene
LacI
Lac repressor gene
5772
6851
selectable marker
KanR
kanamycin resistance
2817
3629
selectable marker
SacB
SacB gene - allows for negative selection on 5% sucrose
569
1987
tag
His
N-terminal 6xHis tag
45
62
trxn termination sequence
T7 term
T7 terminator
2183
2229
